genome.fa.s12089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012089.1 Kokia drynarioides strain JFW-HI SEQ_127088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93928

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78--140	32	2.0	32	90	0	99	31	12	19	36	1.89
433--466	10	3.3	10	91	4	50	20	41	5	32	1.76
11973--12015	17	2.5	17	92	0	68	13	11	18	55	1.68
12603--12647	17	2.9	16	80	12	58	75	4	17	2	1.07
15832--15923	24	3.8	24	86	2	114	28	22	20	28	1.99
15948--16163	82	2.6	82	86	0	279	35	22	17	24	1.95
20657--20764	24	4.5	24	79	4	101	34	23	18	24	1.96
20778--20990	82	2.6	82	86	0	273	37	25	15	21	1.93
24013--24067	28	2.0	28	89	7	85	16	14	25	43	1.86
26122--26162	8	5.1	8	90	0	55	14	0	2	82	0.76
26519--26571	25	2.1	25	86	6	72	26	11	0	62	1.29
26519--26587	26	2.7	25	82	6	77	26	11	0	62	1.29
31415--31520	53	2.0	53	96	0	194	33	21	6	38	1.80
32378--32424	21	2.2	22	88	3	69	23	6	27	42	1.78
32388--32446	22	2.7	22	82	10	68	23	6	27	42	1.79
32632--32677	15	3.4	14	77	20	53	28	0	0	71	0.86
33173--33198	12	2.2	12	100	0	52	61	0	7	30	1.24
35944--36080	73	1.9	73	96	0	256	31	12	13	43	1.81
39950--39995	20	2.2	21	80	3	58	41	15	13	30	1.85
45658--45692	15	2.3	15	90	0	52	0	22	0	77	0.78
50433--50463	11	2.7	11	95	5	53	25	16	35	22	1.94
55540--55584	22	2.0	22	82	4	54	35	24	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56621--56800	89	2.0	89	92	0	297	41	18	6	33	1.76
57077--57137	28	2.2	28	100	0	122	49	13	6	31	1.67
62445--62484	21	1.9	21	100	0	80	20	35	17	27	1.95
62444--62490	21	2.2	21	88	0	76	21	38	14	25	1.92
70523--70554	2	16.0	2	93	0	55	46	3	0	50	1.17
86521--86572	18	3.0	18	86	10	65	53	0	0	46	1.00
88355--88393	2	19.5	2	100	0	78	51	0	0	48	1.00
91321--92251	467	2.0	468	91	1	1517	36	14	23	24	1.93

Tables:   1

The End!