genome.fa.s12096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012096.1 Kokia drynarioides strain JFW-HI SEQ_127095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111318

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--904	476	1.9	475	97	1	1643	42	10	9	37	1.73
1628--1666	20	1.9	21	84	5	53	23	0	5	71	1.05
3750--3784	17	2.1	16	89	5	52	34	2	2	60	1.26
5411--5959	29	18.8	28	73	11	304	34	26	4	34	1.76
5449--5870	30	14.5	28	72	11	219	35	26	3	34	1.75
5441--5959	117	4.4	116	79	9	443	34	27	3	34	1.75
5669--6005	59	5.7	57	75	11	179	34	28	4	32	1.76
11442--11477	18	2.1	18	89	5	56	41	0	25	33	1.55
11773--11807	18	1.9	18	88	0	52	48	0	22	28	1.51
15033--15061	13	2.2	13	100	0	58	24	17	13	44	1.85
15122--15226	25	4.3	25	85	8	144	38	22	26	12	1.90
15133--15235	47	2.2	47	98	0	197	41	24	23	10	1.86
15419--15459	21	2.0	21	85	9	57	48	12	0	39	1.41
17942--17993	26	2.0	26	81	7	61	34	0	0	65	0.93
17930--17976	16	2.9	16	72	15	51	29	0	2	68	1.02
22044--22100	25	2.3	23	82	8	60	50	3	0	45	1.18
23632--23734	23	4.5	23	85	2	120	37	26	21	14	1.92
23632--23734	45	2.3	46	83	5	120	37	26	21	14	1.92
23723--23776	23	2.3	23	96	0	99	40	22	27	9	1.84
25377--25418	21	2.0	21	81	9	50	33	7	14	45	1.72
30917--30965	25	2.0	25	88	8	73	18	22	4	55	1.60
32663--32687	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34231--34264	17	2.1	16	88	5	50	52	11	2	32	1.53
35447--35474	2	14.0	2	100	0	56	50	0	0	50	1.00
45455--46028	286	2.0	286	98	0	1121	31	11	19	37	1.87
47309--47514	111	1.9	111	86	4	299	24	22	19	32	1.98
47674--47751	39	2.0	39	100	0	156	35	17	17	28	1.94
54396--54437	15	2.9	14	86	6	66	38	0	0	61	0.96
57123--57453	164	2.0	164	98	0	644	28	8	13	48	1.72
60643--60667	7	3.6	7	100	0	50	44	0	0	56	0.99
60907--61013	6	18.0	6	75	12	105	47	2	0	48	1.22
60883--60977	29	3.3	29	84	7	115	41	2	1	55	1.18
60907--60991	17	4.9	17	82	13	77	47	1	1	50	1.16
61681--61711	13	2.4	13	94	0	53	25	9	0	64	1.24
62843--63119	29	9.4	29	70	13	147	35	25	4	33	1.77
62862--63161	58	5.1	59	78	6	238	34	25	5	34	1.79
63023--63159	60	2.3	59	80	6	159	33	26	5	35	1.78
62997--63254	59	4.3	61	73	10	196	31	27	5	34	1.81
64825--64866	17	2.4	18	88	4	59	78	2	14	4	1.01
65158--65200	18	2.6	16	79	13	50	62	4	0	32	1.15
72230--72290	16	3.8	16	82	16	65	40	4	0	54	1.22
72239--72291	15	3.2	16	82	17	65	39	1	0	58	1.09
72238--72290	14	3.3	15	82	17	63	41	1	0	56	1.10
72256--72294	17	2.4	16	82	4	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75803--75834	3	10.7	3	100	0	64	34	0	0	65	0.93
87897--87927	15	2.1	15	100	0	62	25	25	6	41	1.79
89331--89365	17	2.1	17	89	5	54	82	2	2	11	0.88
98288--98332	2	22.5	2	86	8	65	51	2	0	46	1.13
98297--98341	10	4.5	10	94	0	63	53	0	0	46	1.00
104502--104536	12	2.9	12	82	0	52	48	20	2	28	1.63
106346--106370	2	12.5	2	100	0	50	48	0	0	52	1.00
111139--111205	4	16.2	4	77	11	64	76	0	23	0	0.79
111142--111189	17	2.9	17	90	3	80	81	0	18	0	0.70
111146--111207	19	3.5	17	74	18	54	72	0	27	0	0.85
111146--111235	17	4.9	19	74	20	70	73	0	26	0	0.84

Tables:   1

The End!