genome.fa.s12097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012097.1 Kokia drynarioides strain JFW-HI SEQ_127096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105572

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--35	2	17.5	2	100	0	70	48	0	0	51	1.00
3549--3630	39	2.1	39	88	4	121	42	15	4	36	1.69
4137--4182	15	3.1	15	84	6	58	67	0	32	0	0.91
4313--4347	18	1.9	18	94	0	61	25	0	14	60	1.35
4384--4424	22	1.9	21	85	5	55	19	0	9	70	1.14
5269--5317	16	3.2	16	73	26	61	59	8	0	32	1.27
7199--7290	45	2.0	45	82	0	112	31	22	20	25	1.98
7543--7640	7	14.0	7	75	8	56	48	29	1	20	1.56
7555--7635	28	2.9	27	81	5	90	51	27	1	19	1.54
7543--7640	42	2.3	42	82	6	110	48	29	1	20	1.56
10604--10662	4	14.2	4	77	13	57	0	33	0	66	0.92
10620--10661	13	3.2	13	89	3	57	0	28	0	71	0.86
10604--10662	17	3.3	17	86	9	73	0	33	0	66	0.92
10752--10790	19	2.1	19	100	0	78	69	20	0	10	1.17
13249--13299	24	2.1	24	96	0	93	54	9	11	23	1.66
19152--19185	17	2.0	17	88	0	50	58	0	2	38	1.13
20139--20193	3	18.3	3	100	0	110	65	0	0	34	0.93
21216--21479	30	9.0	29	80	7	293	39	29	0	30	1.60
21216--21479	29	9.0	28	80	12	273	39	29	0	30	1.60
21223--21478	88	2.9	85	86	6	325	39	30	0	30	1.60
32873--32942	17	4.2	17	87	1	106	42	0	2	54	1.15
32873--32935	6	11.0	6	72	16	53	42	0	3	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32946--32971	13	2.0	13	100	0	52	46	23	7	23	1.78
34804--35000	29	7.1	29	74	17	177	37	30	2	29	1.71
34804--34913	49	2.2	50	87	4	152	37	30	1	30	1.68
34968--35015	21	2.3	21	89	7	71	35	29	4	31	1.76
34968--35021	21	2.5	20	77	16	56	33	31	5	29	1.80
43349--43446	49	2.0	48	84	5	126	31	11	15	41	1.82
43786--43844	3	19.7	3	96	0	109	33	1	0	64	1.04
49025--49095	35	2.0	35	94	0	124	35	26	8	29	1.86
51423--51477	24	2.3	24	87	0	74	49	0	1	49	1.11
51481--51518	19	2.0	20	89	5	60	52	2	0	44	1.14
60504--60532	7	4.1	7	100	0	58	13	0	44	41	1.44
65583--65631	18	2.8	18	84	3	55	16	4	4	75	1.11
65617--65662	24	2.0	24	83	8	60	10	17	15	56	1.67
69409--69442	17	1.9	18	88	5	52	61	2	0	35	1.11
71069--71100	2	16.0	2	93	0	55	46	0	3	50	1.17
85906--85945	21	2.0	20	90	5	62	37	0	5	57	1.21
86023--86064	21	1.9	23	85	9	61	30	9	4	54	1.53
87184--87387	50	3.7	55	80	13	199	20	19	18	41	1.90
87231--87401	60	2.9	57	81	8	186	23	17	17	40	1.90
87396--87435	21	1.9	21	100	0	80	55	5	0	40	1.22
88293--88413	30	4.1	30	82	9	142	65	4	4	25	1.31
89511--89535	13	1.9	13	100	0	50	56	0	8	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89968--90443	59	8.0	60	73	6	407	40	15	18	25	1.90
90010--90433	119	3.6	120	82	6	522	41	14	18	25	1.88
93134--93204	32	2.2	33	85	7	92	39	9	8	42	1.69
94004--94047	19	2.2	19	84	8	52	63	9	0	27	1.24
94166--94324	44	3.6	44	75	8	151	67	16	5	10	1.38
94209--94313	12	9.4	12	70	15	64	68	15	4	11	1.35
94209--94289	32	2.5	32	95	0	144	69	16	3	11	1.32
94211--94262	11	4.8	11	75	13	54	69	15	3	11	1.32
94182--94324	32	4.3	33	81	7	94	67	16	5	10	1.39
94333--94417	21	4.3	20	73	11	61	68	15	7	9	1.38
94329--94404	19	4.0	19	69	17	59	69	13	6	10	1.35
94911--94937	2	13.5	2	100	0	54	51	0	0	48	1.00
99768--100246	209	2.3	209	93	1	809	43	19	13	23	1.86

Tables:   1

The End!