genome.fa.s12099.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012099.1 Kokia drynarioides strain JFW-HI SEQ_127098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338792

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537--662	23	5.4	23	87	5	164	46	23	19	11	1.82
5689--5765	21	3.5	21	67	19	50	41	28	7	22	1.81
11140--11188	23	2.1	23	100	0	98	36	16	16	30	1.91
15233--15287	24	2.3	24	96	0	101	14	27	3	54	1.57
16555--16739	63	2.9	65	86	5	268	46	0	3	49	1.24
19143--19185	21	2.0	21	95	0	77	9	11	25	53	1.67
28774--29265	40	12.4	40	77	6	378	32	22	16	28	1.96
28799--29224	156	2.7	157	79	6	371	32	21	17	28	1.96
28773--29265	119	4.2	119	77	6	471	32	22	16	28	1.96
33726--33778	21	2.5	22	82	11	67	35	24	13	26	1.92
46681--46733	21	2.5	20	82	11	63	35	24	13	26	1.92
48851--48966	30	3.9	30	84	6	146	32	3	24	39	1.72
48922--48987	30	2.2	30	86	5	89	36	1	21	40	1.62
50600--50637	4	9.0	4	88	11	58	28	0	0	71	0.87
50600--50637	9	4.4	9	96	3	62	28	0	0	71	0.87
51409--51735	60	5.4	60	76	7	288	32	26	20	20	1.97
51409--51746	180	1.9	180	80	4	396	33	26	21	19	1.97
61018--61204	93	2.0	93	98	0	365	38	13	20	26	1.91
61664--61718	26	2.1	26	83	6	67	45	14	14	25	1.83
63964--64163	79	2.5	79	79	9	219	28	22	22	26	1.99
74451--74485	12	2.8	13	87	12	56	5	14	0	80	0.89
74451--74499	12	3.9	12	82	12	55	6	16	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74451--74499	24	2.0	26	84	15	68	6	16	0	77	0.96
74450--74507	12	4.5	13	77	14	50	5	18	0	75	0.98
74448--74505	31	1.9	30	83	16	75	5	17	0	77	0.94
90309--90355	24	2.0	24	83	8	60	21	21	8	48	1.76
90620--90652	14	2.4	14	90	10	50	42	45	0	12	1.41
90633--90694	22	2.8	22	95	0	106	37	53	0	9	1.34
90601--90684	11	7.6	11	69	5	53	39	51	0	9	1.35
90656--90694	11	3.5	11	78	0	51	35	53	0	10	1.35
92266--92420	29	5.2	30	78	12	142	32	2	25	39	1.70
92266--92420	30	5.2	29	77	14	129	32	2	25	39	1.70
93612--93656	19	2.4	19	88	7	65	75	4	2	17	1.07
106675--106703	14	2.1	14	93	6	51	20	0	6	72	1.07
107086--107144	17	3.6	16	78	19	50	44	1	1	52	1.21
107098--107137	20	2.0	20	90	5	62	47	0	0	52	1.00
107216--107280	29	2.3	28	86	5	87	41	1	7	49	1.41
107693--107725	16	2.1	16	100	0	66	30	0	6	63	1.18
109016--109063	23	2.1	24	84	7	64	79	6	2	12	1.01
110916--110987	19	3.7	19	86	3	99	30	6	16	45	1.74
113786--113838	26	2.0	26	88	0	79	28	20	22	28	1.99
113832--113912	37	2.2	37	79	0	90	32	17	23	27	1.97
113895--114001	37	2.9	36	78	8	90	26	17	22	33	1.96
113937--114015	37	2.1	37	88	0	113	24	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117573--117603	16	1.9	16	93	0	53	61	0	16	22	1.34
121354--121384	16	1.9	16	93	0	53	61	0	16	22	1.34
121387--121635	127	2.0	127	90	1	392	35	15	19	29	1.92
122355--122431	37	2.1	38	82	7	95	32	10	22	35	1.88
124112--124155	22	1.9	24	86	9	65	45	9	2	43	1.48
124799--124860	30	2.1	30	100	0	124	33	16	16	33	1.91
125945--125998	21	2.6	21	85	5	74	33	29	11	25	1.91
158125--158255	36	3.6	36	81	4	165	16	26	18	38	1.92
162238--162330	29	3.2	29	85	0	123	45	19	13	21	1.85
173926--173998	20	3.5	21	76	14	62	47	2	4	45	1.36
173930--173969	20	2.0	20	95	0	71	47	5	5	42	1.47
177633--177681	18	2.7	18	80	0	71	22	16	22	38	1.92
177630--177698	18	3.8	18	77	5	68	23	18	23	34	1.96
179138--179433	50	5.9	50	80	4	310	22	22	17	37	1.94
179153--179443	150	1.9	150	84	1	386	23	21	17	37	1.94
179138--179443	100	3.1	99	80	3	355	22	23	17	36	1.94
179737--179777	21	2.0	21	95	0	73	29	24	14	31	1.95
179743--179790	21	2.3	21	85	0	60	33	27	14	25	1.94
180413--180528	42	2.8	41	78	12	119	28	25	8	37	1.85
180501--180679	41	4.3	41	85	6	227	25	28	11	34	1.90
180522--180679	81	1.9	83	88	2	239	24	29	11	34	1.90
181803--181934	50	2.6	50	83	4	167	25	16	15	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181948--182130	46	4.0	45	80	3	222	21	14	25	39	1.91
182307--182853	99	5.6	100	74	10	493	27	19	17	35	1.94
182235--182904	99	6.8	101	74	10	415	28	19	17	35	1.94
182235--182904	200	3.4	198	80	7	754	28	19	17	35	1.94
185560--185606	23	2.1	22	84	4	58	51	8	19	21	1.73
189640--189677	16	2.5	15	87	8	58	31	2	0	65	1.06
193062--193131	29	2.3	32	78	12	83	37	2	10	50	1.51
193271--193352	31	2.8	29	75	17	87	42	15	9	31	1.80
197167--197250	22	3.9	21	77	3	78	34	4	17	42	1.71
201466--201504	5	7.8	5	97	0	60	41	12	20	25	1.88
201466--201549	5	16.0	5	79	9	51	35	9	21	33	1.86
201491--201594	22	4.7	22	75	7	86	32	3	21	42	1.71
202412--202474	24	2.6	24	82	0	81	23	15	9	50	1.73
204541--204667	40	3.2	40	82	2	148	30	15	26	26	1.96
210329--210399	33	2.2	33	90	5	110	23	7	11	57	1.58
210348--210468	59	2.1	56	81	7	136	23	9	9	57	1.58
211792--211902	61	1.9	57	83	10	145	48	2	3	45	1.34
212153--212216	28	2.4	25	85	12	92	42	0	7	50	1.31
223086--223128	15	2.9	14	76	10	50	30	0	2	67	1.03
229417--229446	15	1.9	16	93	6	53	40	0	3	56	1.16
234805--234922	31	3.9	31	68	20	86	44	10	17	27	1.81
246818--247080	25	10.6	25	74	6	203	34	25	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246921--247058	74	1.9	74	81	6	172	36	28	14	21	1.92
257356--257449	48	2.0	48	93	4	163	48	17	15	18	1.81
269812--269877	24	2.8	24	79	9	80	25	19	25	28	1.99
275126--275187	31	2.0	31	96	0	115	25	14	22	37	1.92
293811--294102	23	12.8	23	84	2	365	47	13	5	34	1.65
295356--296387	531	1.9	528	96	1	1762	37	10	18	33	1.86
303427--303486	27	2.3	25	77	8	66	15	5	6	73	1.22
310147--310186	14	2.8	14	84	3	53	72	5	2	20	1.15
310258--310292	17	2.1	17	100	0	70	17	28	5	48	1.69
311959--312187	103	2.2	103	87	0	323	27	19	23	29	1.98
312986--313035	21	2.4	22	80	10	59	34	6	28	32	1.81
315849--315899	15	3.4	15	84	15	61	3	31	0	64	1.11
323644--323690	24	2.0	24	87	8	69	48	10	14	25	1.76
325032--325063	12	2.8	11	90	9	55	6	0	21	71	1.07
330589--330618	14	2.2	14	94	5	53	30	23	10	36	1.87
336423--336461	20	1.9	21	94	5	71	12	10	7	69	1.37

Tables:   1

The End!