genome.fa.s12103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012103.1 Kokia drynarioides strain JFW-HI SEQ_127102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87334

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441--491	26	2.0	26	84	7	68	58	0	13	27	1.36
504--546	21	2.0	21	82	8	52	30	16	18	34	1.93
1055--1588	30	18.2	29	72	12	194	38	23	3	34	1.73
1055--1257	60	3.4	60	80	6	223	40	22	3	33	1.71
1055--1260	90	2.3	90	79	5	236	39	22	3	34	1.71
1055--1393	90	3.8	90	71	13	222	38	23	3	34	1.72
1320--1517	29	6.8	29	77	5	186	37	27	3	31	1.74
1494--1550	29	2.0	29	83	13	73	38	21	1	38	1.64
1235--1536	86	3.5	86	75	8	231	37	25	3	33	1.72
1320--1517	57	3.4	58	86	4	240	37	27	3	31	1.74
5734--5855	55	2.2	55	92	2	201	45	20	2	31	1.64
10139--10799	50	13.4	50	72	4	408	34	17	31	16	1.92
10210--10735	99	5.3	98	77	3	466	34	17	31	16	1.92
10142--10642	197	2.5	198	83	2	621	34	18	31	15	1.92
12297--12337	21	2.0	21	85	9	57	29	19	21	29	1.98
12873--13282	30	13.8	30	76	7	254	37	24	2	34	1.71
12903--13219	89	3.6	87	83	5	318	36	23	3	36	1.72
12881--13276	59	6.7	59	74	11	249	37	25	3	34	1.71
13164--13345	29	6.4	28	81	9	181	39	28	1	30	1.67
24330--24368	8	5.0	8	81	6	53	35	2	2	58	1.25
24480--24518	20	1.9	20	89	5	60	23	2	5	69	1.21
31575--31609	2	17.5	2	93	0	61	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31773--31822	22	2.3	22	82	6	57	40	6	0	54	1.25
32713--32762	25	2.0	25	92	0	82	50	2	2	46	1.24
33007--33035	5	6.0	5	92	8	51	62	0	0	37	0.96
33007--33035	9	3.0	10	90	10	51	62	0	0	37	0.96
33780--34288	254	2.0	254	99	0	1000	39	12	9	37	1.76
34281--34350	34	2.1	34	97	0	131	27	0	21	51	1.48
38791--38855	34	1.9	34	90	0	103	29	1	20	49	1.58
39351--39375	2	12.5	2	100	0	50	48	0	0	52	1.00
41424--41474	22	2.3	22	82	0	66	33	0	17	49	1.47
43837--43866	12	2.5	12	94	0	51	73	0	3	23	0.98
44159--44184	3	8.7	3	100	0	52	34	0	0	65	0.93
47146--47199	23	2.5	21	75	16	56	48	1	1	48	1.23
47417--47463	24	2.0	24	87	8	69	36	0	8	55	1.31
48129--48164	11	3.4	11	88	3	56	44	0	0	55	0.99
49151--49214	29	2.2	29	100	0	128	37	3	6	53	1.42
49142--49214	29	2.5	27	91	6	92	38	2	6	52	1.43
53953--54069	48	2.4	48	81	0	135	35	33	7	23	1.84
60230--60278	18	2.8	17	82	11	55	26	24	0	48	1.51
63364--63478	31	3.9	31	74	22	102	26	18	10	44	1.82
63427--63499	30	2.4	30	79	6	76	30	17	10	41	1.84
63826--63881	24	2.2	25	87	6	78	64	10	8	16	1.49
69107--69153	2	23.5	2	100	0	94	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70996--71042	4	11.8	4	100	0	94	25	23	0	51	1.49
71312--71364	18	2.8	19	77	8	54	26	16	45	11	1.82
71863--72041	38	4.7	38	73	19	142	24	17	24	34	1.96
71867--72041	78	2.3	72	82	9	199	24	17	24	33	1.96
72441--74179	49	35.6	49	67	8	748	19	26	17	35	1.94
72385--74181	98	18.4	98	86	1	2217	19	26	17	35	1.95
80820--81008	42	4.5	42	80	2	191	26	24	10	38	1.88
84349--84426	7	11.1	7	97	0	147	14	1	56	28	1.46
84812--84926	58	2.0	58	91	0	185	27	21	22	27	1.99
86062--86102	21	2.0	21	85	9	57	26	2	2	68	1.15

Tables:   1

The End!