Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012105.1 Kokia drynarioides strain JFW-HI SEQ_127104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4704
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.31

Warning! 150 characters in sequence are not A, C, G, or T


Found at i:1285 original size:25 final size:25

Alignment explanation


    Indices: 1237--1285  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1227 CTACACTAAT

                               *     
       1237 TAGAATTTAATTGGGAAATTAAAAA
          1 TAGAATTTAATTGGGAAATGAAAAA

                *                    
       1262 TAGAGTTTAATTGGGAGAA-GAAAA
          1 TAGAATTTAATTGGGA-AATGAAAA

       1286 TCCAAAAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  25   19  0.90
  26    2  0.10

ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29


Consensus pattern (25 bp):   
TAGAATTTAATTGGGAAATGAAAAA
Done.