Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012107.1 Kokia drynarioides strain JFW-HI SEQ_127106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4578
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:3417 original size:18 final size:17

Alignment explanation


    Indices: 3394--3427  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

       3384 TTTAAAAGAA

                              
       3394 AATCAACAAAAGATTAGT
          1 AATCAACAAAAG-TTAGT

                  *         
       3412 AATCAATAAAAGTTAG
          1 AATCAACAAAAGTTAG

       3428 AAAAGGATTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    4  0.27
  18   11  0.73

ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24


Consensus pattern (17 bp):   
AATCAACAAAAGTTAGT
Done.