Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012109.1 Kokia drynarioides strain JFW-HI SEQ_127108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1800
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36


Found at i:283 original size:33 final size:30

Alignment explanation


    Indices: 237--296  Score: 84
    Period size: 33  Copynumber: 1.9  Consensus size: 30

        227 CATTTAATCA

                               *           
        237 GATAAATTAATGATATTAACTATTTAAACTT
          1 GATAAATTAATGATATTAAAT-TTTAAACTT

                                         
        268 GATAAGATTAAATGATATTAAATTTTAAA
          1 GATAA-ATT-AATGATATTAAATTTTAAA

        297 TTTAAATATA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  31    5  0.19
  32    9  0.35
  33   12  0.46

ACGTcount: A:0.48, C:0.03, G:0.08, T:0.40


Consensus pattern (30 bp):   
GATAAATTAATGATATTAAATTTTAAACTT
Done.