Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012110.1 Kokia drynarioides strain JFW-HI SEQ_127109, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5832
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32


Found at i:1125 original size:23 final size:23

Alignment explanation


    Indices: 1099--1171  Score: 137
    Period size: 23  Copynumber: 3.2  Consensus size: 23

       1089 ACACTAGCGC

                             *     
       1099 GCTCTCTGATTAGCACTGTGTGT
          1 GCTCTCTGATTAGCACTTTGTGT

                                   
       1122 GCTCTCTGATTAGCACTTTGTGT
          1 GCTCTCTGATTAGCACTTTGTGT

                                   
       1145 GCTCTCTGATTAGCACTTTGTGT
          1 GCTCTCTGATTAGCACTTTGTGT

                
       1168 GCTC
          1 GCTC

       1172 AGTACTTTGT


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  23   49  1.00

ACGTcount: A:0.12, C:0.23, G:0.23, T:0.41


Consensus pattern (23 bp):   
GCTCTCTGATTAGCACTTTGTGT
Done.