genome.fa.s12124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012124.1 Kokia drynarioides strain JFW-HI SEQ_127123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83826

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5772--5849	41	1.9	41	91	0	129	3	28	14	53	1.58
11353--11401	20	2.5	20	100	0	98	42	4	6	46	1.47
18394--18443	23	2.1	24	78	14	59	46	0	8	46	1.32
23406--23452	18	2.6	18	80	10	51	29	0	2	68	1.02
25572--25598	14	1.9	14	100	0	54	48	14	0	37	1.45
45858--45927	30	2.3	31	82	7	90	45	18	14	21	1.84
48151--48190	19	2.1	19	100	0	80	62	5	17	15	1.49
54992--55025	18	1.9	18	94	5	61	58	2	2	35	1.28
58786--58839	23	2.4	23	84	3	74	35	24	24	16	1.95
58829--58906	23	3.4	23	84	7	88	42	23	25	8	1.83
58967--59014	24	1.9	26	84	16	66	31	22	0	45	1.53
62965--63003	18	2.1	19	85	4	53	23	5	17	53	1.63
64563--64652	28	3.2	28	88	0	135	26	10	30	33	1.89
64737--64828	29	3.2	29	66	14	73	35	3	26	34	1.73
64722--64888	59	2.8	58	83	8	178	37	2	25	34	1.69
66079--66125	23	2.1	23	88	7	71	55	4	8	31	1.49
66979--67622	194	3.3	194	85	3	808	23	21	17	37	1.94
67653--67786	39	3.4	38	80	2	151	25	16	33	24	1.96
67635--67781	78	1.9	78	85	2	206	25	19	31	23	1.98
68169--68727	50	11.3	50	69	11	256	14	23	19	42	1.88
68145--68725	101	5.9	101	74	10	353	14	23	19	42	1.88
68276--68727	142	3.1	142	84	7	523	14	23	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70726--70755	3	10.3	3	92	7	53	30	0	0	70	0.88
74455--74496	22	1.9	22	100	0	84	47	4	7	40	1.52
74817--75036	58	3.8	59	80	7	193	40	2	22	33	1.68
74837--75036	29	6.9	29	72	11	115	42	2	22	33	1.67
76780--76873	17	5.5	17	80	2	98	53	6	0	40	1.27
81276--81307	3	10.7	3	100	0	64	34	0	0	65	0.93
81854--81911	4	14.5	4	79	13	57	67	0	31	1	1.01
81853--81904	20	2.8	18	85	8	70	67	0	32	0	0.91

Tables:   1

The End!