genome.fa.s12131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012131.1 Kokia drynarioides strain JFW-HI SEQ_127130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63649

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34--66	17	1.9	17	88	11	50	66	6	0	27	1.15
1365--1402	16	2.4	17	82	13	53	52	0	0	47	1.00
1766--1799	17	2.0	17	88	11	52	47	0	2	50	1.16
4766--4818	6	8.8	6	80	15	65	18	1	16	62	1.42
4892--4947	26	2.2	26	83	0	67	58	7	1	32	1.35
4925--4982	28	2.1	28	83	6	73	48	13	1	36	1.53
10246--10339	27	3.5	27	72	2	82	31	27	25	14	1.95
10869--10912	23	2.0	23	86	13	65	50	4	18	27	1.66
14022--14048	5	5.4	5	100	0	54	81	18	0	0	0.69
16015--16075	14	4.4	14	78	0	50	31	0	24	44	1.54
16024--16075	21	2.5	22	81	9	63	34	0	23	42	1.54
16015--16129	35	3.3	35	81	4	99	30	0	25	43	1.61
16050--16135	35	2.5	35	84	0	100	27	1	26	44	1.62
18322--18368	26	1.9	25	83	12	62	44	8	10	36	1.70
19225--19256	10	3.1	10	91	8	55	0	9	0	90	0.45
19225--19256	11	3.0	11	95	4	57	0	9	0	90	0.45
19552--19590	11	3.3	12	83	16	55	30	0	0	69	0.89
21255--21320	28	2.3	28	84	2	78	36	1	28	33	1.67
21336--21593	29	8.9	28	76	11	171	36	3	24	36	1.71
21327--21485	60	2.7	58	80	5	176	33	3	27	35	1.73
21253--21564	58	5.3	58	77	8	244	36	2	25	35	1.71
21269--21607	87	3.9	87	79	9	305	35	2	25	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21277--21585	29	10.6	28	75	8	163	36	2	24	35	1.71
22601--22676	30	2.8	26	71	17	66	59	0	3	36	1.16
31437--31474	20	1.9	20	89	10	60	63	0	0	36	0.95
32356--32441	44	2.0	44	81	4	102	54	0	0	45	0.99
33300--33351	25	2.1	26	82	7	63	50	7	1	40	1.42
34664--34738	39	1.9	39	83	5	98	46	21	18	13	1.83
34703--34767	23	2.8	23	84	9	87	41	20	21	16	1.90
35151--35188	16	2.3	16	86	13	51	63	7	0	28	1.23
37265--37319	26	2.1	26	100	0	110	21	27	25	25	2.00
39903--40040	69	2.0	69	97	0	258	34	14	14	36	1.87
49736--49929	97	2.0	97	87	7	279	39	13	17	29	1.89
49756--49952	97	2.0	97	80	8	215	40	12	16	30	1.86
50146--50207	28	2.2	28	79	0	70	32	9	27	30	1.89
50174--50324	60	2.5	58	86	8	205	31	8	29	31	1.87
50164--50265	29	3.5	29	67	16	77	35	8	25	30	1.86
50184--50476	59	5.0	59	82	8	294	35	5	27	31	1.80
50184--50326	30	4.8	31	70	18	108	30	7	30	30	1.85
50246--50441	29	6.6	29	68	21	104	36	3	27	33	1.74
50337--50516	29	6.1	30	73	13	140	36	4	25	33	1.76
51444--51510	9	7.7	9	70	12	50	38	1	2	56	1.24
52281--52360	17	4.6	17	71	1	70	51	5	3	40	1.42
52766--53152	49	7.9	49	74	9	279	17	25	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52775--53147	147	2.5	146	83	5	428	16	25	19	38	1.92
61970--62097	41	3.1	42	73	16	117	30	17	34	17	1.93
62029--62102	24	3.4	24	66	24	63	28	20	33	17	1.95
61998--62400	41	9.6	41	83	5	430	31	19	30	18	1.96
62166--62267	51	2.0	51	90	0	159	34	18	27	19	1.95
62084--62349	133	2.0	133	90	0	415	32	19	29	18	1.96
62047--62489	174	2.5	176	83	5	518	32	19	29	18	1.96
62007--62400	215	1.8	215	88	1	610	31	19	30	18	1.96
62407--62499	41	2.3	40	85	5	125	34	21	27	16	1.95
62590--62629	18	2.2	19	90	4	64	70	0	0	30	0.88

Tables:   1

The End!