genome.fa.s12134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012134.1 Kokia drynarioides strain JFW-HI SEQ_127133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116498

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9037--9270	28	8.2	28	76	11	111	33	3	26	36	1.73
9037--9271	30	8.2	28	74	13	124	34	3	25	36	1.73
9047--9272	56	3.9	57	77	11	180	35	3	24	36	1.73
10259--10313	3	18.0	3	85	10	76	32	1	1	63	1.15
11020--11096	6	13.7	6	75	22	78	54	0	0	45	0.99
11020--11068	23	2.1	23	92	7	82	53	0	0	46	1.00
11034--11096	17	3.7	17	89	8	101	53	0	0	46	1.00
11020--11095	10	7.9	10	73	24	74	55	0	0	44	0.99
11026--11083	23	2.5	23	86	5	73	55	0	0	44	0.99
13742--13792	26	2.0	26	84	0	66	47	9	15	27	1.77
14006--14051	23	2.0	24	82	4	58	52	2	0	45	1.13
14049--14086	19	2.0	20	89	5	60	36	0	5	57	1.21
14049--14105	21	2.7	22	84	10	66	33	1	3	61	1.23
17868--17892	7	3.6	7	100	0	50	56	0	0	44	0.99
24030--24080	12	4.3	12	80	5	59	72	19	3	3	1.16
24030--24080	23	2.2	24	89	3	77	72	19	3	3	1.16
24016--24080	23	3.0	21	78	10	69	70	20	3	6	1.22
24083--24145	21	3.0	21	84	13	85	66	20	6	6	1.36
24113--24173	32	1.9	33	86	6	90	63	22	6	6	1.42
32692--32731	3	13.3	3	100	0	80	67	0	0	32	0.91
35922--35960	17	2.3	17	81	0	51	15	10	25	48	1.76
35950--36045	41	2.3	41	94	0	165	29	5	28	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36650--36703	21	2.5	22	80	17	60	64	7	0	27	1.20
44413--44579	84	2.0	83	98	0	316	36	17	18	26	1.93
47014--47064	19	2.7	18	73	8	57	76	0	21	1	0.88
49730--49792	31	2.0	32	81	9	76	60	12	0	26	1.33
56669--56734	22	3.0	22	100	0	132	45	4	4	45	1.44
56763--56801	12	3.2	12	85	0	51	64	0	0	35	0.94
58800--58863	27	2.4	27	97	0	119	50	3	12	34	1.56
83509--83588	21	3.8	21	79	9	83	43	30	13	12	1.81
88804--88854	18	2.9	18	85	2	68	21	17	7	52	1.69
90997--91043	10	4.6	10	86	2	67	40	21	2	36	1.65
90997--91051	20	2.8	20	88	5	76	40	21	3	34	1.71
91046--91121	23	3.3	23	74	17	84	40	21	2	35	1.67
91026--91147	47	2.6	48	92	5	203	40	20	3	36	1.69
91068--91137	16	4.4	16	66	16	56	41	22	2	32	1.69
91120--91164	10	4.4	10	85	2	63	40	17	2	40	1.62
91182--91522	23	14.8	23	89	2	470	48	12	3	35	1.58
91534--91647	10	11.5	10	81	0	122	43	21	1	32	1.63
91534--91639	30	3.5	30	89	0	140	44	21	0	33	1.59
91672--91843	10	16.4	10	65	24	63	38	19	4	37	1.71
91605--91893	68	4.4	68	81	10	305	39	18	4	37	1.71
91682--91830	59	2.6	59	91	2	230	38	20	4	36	1.73
91739--91897	69	2.3	69	83	3	203	40	18	4	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91818--91892	23	3.0	26	73	13	77	42	18	4	34	1.69
91974--92107	67	2.0	65	85	5	180	44	25	10	19	1.82
92367--92627	36	6.9	36	81	10	270	36	24	9	29	1.87
92494--92520	12	2.2	12	100	0	54	33	33	0	33	1.58
92458--92556	48	2.1	48	96	0	180	34	26	8	31	1.85
92423--92592	84	2.0	84	95	0	304	35	25	8	30	1.87
92386--92627	120	2.0	120	88	0	358	35	25	8	30	1.86
94890--95031	33	4.4	33	74	6	92	35	18	17	28	1.94
94942--95619	32	21.2	32	84	1	784	35	17	16	29	1.92
101743--101823	29	2.8	29	96	0	144	24	11	19	44	1.83
104351--104403	13	4.1	12	86	13	70	45	26	0	28	1.54
104329--104403	26	2.8	26	77	18	82	44	30	0	25	1.55

Tables:   1

The End!