Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012135.1 Kokia drynarioides strain JFW-HI SEQ_127134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65616
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Warning! 19 characters in sequence are not A, C, G, or T
Found at i:16077 original size:200 final size:200
Alignment explanation
Indices: 15837--16412 Score: 927
Period size: 200 Copynumber: 2.9 Consensus size: 200
15827 CAGGCCTACA
* * * * *
15837 CTCAAAGCGAGCGAAATATTCAAAACCCAGCTTCCTGATGAGACATTGAGAAGTAGGTGGAAGCA
1 CTCAAAACAAGCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCA
* *
15902 ATAAATGGTTAGCTGCCAGATGAGATACGGAGAAGTGAACCAAATCCGTCTTCCTGATGAGATAC
66 ATAAATGGTTAGCTGCCAGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATAC
* * *
15967 AGAGAAGCGGATTGAAACAGCGATGTGATCATCTTCCTGATGAGACGCTGAAATGAAGACCTAAA
131 AGAGAAGCGGATTGAAACAGCGATGTGATCATCTTCCTGATGAGAAGCTAAAATGAAGACCCAAA
*
16032 TGAGG
196 TAAGG
*
16037 CTTAAAACAAGCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCA
1 CTCAAAACAAGCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCA
*
16102 ATAAATGGTTAGTTGCCAGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATAC
66 ATAAATGGTTAGCTGCCAGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATAC
*
16167 AGAGAAGCGGATTGAAACATCGATGTGATCATCTTCCTGATGAGAAGCTAAAATGAAGACCCAAA
131 AGAGAAGCGGATTGAAACAGCGATGTGATCATCTTCCTGATGAGAAGCTAAAATGAAGACCCAAA
16232 TAAGG
196 TAAGG
*
16237 CTCAAAACAAGCGAAATCTTCAAAACCCAACTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCA
1 CTCAAAACAAGCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCA
* * *
16302 ATAAATGGTTAGCTTCCAGACGAGATACTGAGAAGTGAACCAAATTTGTCTTCCTGATGAGATAC
66 ATAAATGGTTAGCTGCCAGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATAC
* * * * * *
16367 AGAGAAGTGGATTGAAACAAGTGACGCGGTCATTTTCCTGATGAGA
131 AGAGAAGCGGATTGAAAC-AGCGATGTGATCATCTTCCTGATGAGA
16413 TACTGAAAAG
Statistics
Matches: 348, Mismatches: 27, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
200 327 0.94
201 21 0.06
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (200 bp):
CTCAAAACAAGCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCA
ATAAATGGTTAGCTGCCAGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATAC
AGAGAAGCGGATTGAAACAGCGATGTGATCATCTTCCTGATGAGAAGCTAAAATGAAGACCCAAA
TAAGG
Found at i:16782 original size:12 final size:11
Alignment explanation
Indices: 16766--16840 Score: 54
Period size: 11 Copynumber: 7.1 Consensus size: 11
16756 TTGTTTAAAA
*
16766 ATTTAAAATTT
1 ATTTTAAATTT
16777 ATTTTAAATTT
1 ATTTTAAATTT
16788 A-----AATTT
1 ATTTTAAATTT
16794 ATTTTAAATTT
1 ATTTTAAATTT
*
16805 AAATTT-AATTT
1 -ATTTTAAATTT
*
16816 AAGTTTAAATTT
1 -ATTTTAAATTT
16828 ATTTTCAAATTT
1 ATTTT-AAATTT
16840 A
1 A
16841 AAATTACTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
6 6 0.12
11 30 0.58
12 16 0.31
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (11 bp):
ATTTTAAATTT
Found at i:16785 original size:11 final size:11
Alignment explanation
Indices: 16785--16840 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
16775 TTATTTTAAA
16785 TTTAAATTTAT
1 TTTAAATTTAT
*
16796 TTTAAATTTAAA
1 TTTAAATTT-AT
*
16808 TTT-AATTTAAG
1 TTTAAATTT-AT
16819 TTTAAATTTAT
1 TTTAAATTTAT
16830 TTTCAAATTTA
1 TTT-AAATTTA
16841 AAATTACTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 23 0.59
12 16 0.41
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:16790 original size:6 final size:6
Alignment explanation
Indices: 16764--16842 Score: 76
Period size: 6 Copynumber: 13.5 Consensus size: 6
16754 ATTTGTTTAA
* *
16764 AAATTT AAAATTT -ATTTT AAATTT AAATTT -ATTTT AAATTT AAATTT
1 AAATTT -AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* *
16811 -AATTT AAGTTT AAATTT -ATTTT CAAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT -AAATTT AAA
16843 ATTACTAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
5 17 0.29
6 32 0.54
7 10 0.17
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (6 bp):
AAATTT
Found at i:16793 original size:17 final size:17
Alignment explanation
Indices: 16749--16842 Score: 125
Period size: 17 Copynumber: 5.4 Consensus size: 17
16739 AAATTTTTTT
* *
16749 TTTAAATTTGTTTAAAAA
1 TTTAAATTTATTT-TAAA
16767 TTTAAAATTTATTTTAAA
1 TTT-AAATTTATTTTAAA
16785 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
16802 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
16819 TTTAAATTTATTTTCAAA
1 TTTAAATTTATTTT-AAA
16837 TTTAAA
1 TTTAAA
16843 ATTACTAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
17 42 0.62
18 17 0.25
19 9 0.13
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:16809 original size:23 final size:23
Alignment explanation
Indices: 16780--16828 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
16770 AAAATTTATT
*
16780 TTAAATTTAAATTT-ATTTTAAAT
1 TTAAATTT-AATTTAAGTTTAAAT
16803 TTAAATTTAATTTAAGTTTAAAT
1 TTAAATTTAATTTAAGTTTAAAT
16826 TTA
1 TTA
16829 TTTTCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TTAAATTTAATTTAAGTTTAAAT
Found at i:16858 original size:35 final size:34
Alignment explanation
Indices: 16749--16860 Score: 125
Period size: 35 Copynumber: 3.2 Consensus size: 34
16739 AAATTTTTTT
* * *
16749 TTTAAATTTGTTTAAAAATTTAAAATTTATTTTAAA
1 TTTAAATTTATTT-TAAATTTAAAA-TTAATTTAAA
* *
16785 TTTAAATTTATTTTAAATTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAATTTAAAATTAATTTAAA
* **
16819 TTTAAATTTATTTTCAAATTTAAAATTACTAAAAA
1 TTTAAATTTATTTT-AAATTTAAAATTAATTTAAA
16854 TTTAAAT
1 TTTAAAT
16861 AAAGTTAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
34 22 0.34
35 31 0.48
36 12 0.18
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (34 bp):
TTTAAATTTATTTTAAATTTAAAATTAATTTAAA
Found at i:18782 original size:59 final size:59
Alignment explanation
Indices: 18631--19124 Score: 697
Period size: 59 Copynumber: 8.4 Consensus size: 59
18621 AAGCTTTTTG
* * *
18631 AAAATTACCATTTTACCCCTGAACTTCCAAAAATCTCATTTTTGA-CCCTAGACCTTCTAA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGA-ACCTTCT-A
*
18691 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAACCTTCTA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
**
18750 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCTAAACCTTCTA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
* * * *
18809 AAAATTACCATTATACCCCCAAACTTCCAAAAATCCCATTTTTGACCACCAAACCTTTTA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACC-CCGAACCTTCTA
* *
18869 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGATCTCGAACCTTCTA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
* * * *
18928 AAAATTGCCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTTTATCCTGAACCTTCTA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCA-TTTTTGACCCCGAACCTTCTA
* * * *
18988 AAAATTACCATTTTGCCCCC-AACTTCCAAAAATCCCATTTTTAACCCCTAACTTTCTA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
* * * *
19046 AAAATTACCATTTTACTCCTGAACTTCCAAAAATCCCATTTTTGACTCCGAACCTTC-C
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
* *
19104 AAAACTACCATTTTGCCCCCG
1 AAAATTACCATTTTACCCCCG
19125 TGCATCCGAA
Statistics
Matches: 390, Mismatches: 40, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
58 50 0.13
59 197 0.51
60 139 0.36
61 4 0.01
ACGTcount: A:0.33, C:0.32, G:0.04, T:0.31
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
Found at i:18864 original size:119 final size:118
Alignment explanation
Indices: 18631--19124 Score: 708
Period size: 119 Copynumber: 4.2 Consensus size: 118
18621 AAGCTTTTTG
* * *
18631 AAAATTACCATTTTACCCCTGAACTTCCAAAAATCTCATTTTTGACCCTAGACCTTCTAAAAAAT
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCTAAACCTTCT-AAAAAT
*
18696 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAACCTTCTA
65 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
18750 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCTAAACCTTCTAAAAATT
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCTAAACCTTCTAAAAATT
* * * *
18815 ACCATTATACCCCCAAACTTCCAAAAATCCCATTTTTGACCACCAAACCTTTTA
66 ACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACC-CCGAACCTTCTA
* *
18869 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGA-TCTCGAACCTTCTAAAAAT
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCT-AAACCTTCTAAAAAT
* * * *
18933 TGCCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTTTATCCTGAACCTTCTA
65 TACCATTTTACCCCCGAACTTCCAAAAATCCCA-TTTTTGACCCCGAACCTTCTA
* * *
18988 AAAATTACCATTTTGCCCCC-AACTTCCAAAAATCCCATTTTTAACCCCT-AACTTTCTAAAAAT
1 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGA-CCCTAAACCTTCTAAAAAT
* * * *
19051 TACCATTTTACTCCTGAACTTCCAAAAATCCCATTTTTGACTCCGAACCTTC-C
65 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
* *
19104 AAAACTACCATTTTGCCCCCG
1 AAAATTACCATTTTACCCCCG
19125 TGCATCCGAA
Statistics
Matches: 338, Mismatches: 31, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
116 19 0.06
117 15 0.04
118 113 0.33
119 182 0.54
120 9 0.03
ACGTcount: A:0.33, C:0.32, G:0.04, T:0.31
Consensus pattern (118 bp):
AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCTAAACCTTCTAAAAATT
ACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTA
Found at i:18930 original size:178 final size:176
Alignment explanation
Indices: 18631--19124 Score: 715
Period size: 178 Copynumber: 2.8 Consensus size: 176
18621 AAGCTTTTTG
* * * * *
18631 AAAATTACCATTTTACCCCTGAACTTCCAAAAATCTCATTTTTGACCCTAGACCTTCTAAAAAAT
1 AAAATTACCATTTTACCCC-CAACTTCCAAAAATCCCATTTTTGACCCCAAACCTT-TTAAAAAT
* *
18696 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCGAACCTTCTAAAAATTACCAT
64 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGA-CTCGAACCTTCTAAAAATTACCAT
18761 TTTACCCCCGAACTTCCAAAAATCCCA-TTTTTGACCCTAAACCTTCTA
128 TTTACCCCCGAACTTCCAAAAATCCCATTTTTTGACCCTAAACCTTCTA
*
18809 AAAATTACCATTATACCCCCAAACTTCCAAAAATCCCATTTTTGACCACCAAACCTTTTAAAAAT
1 AAAATTACCATTTTACCCCC-AACTTCCAAAAATCCCATTTTTGACC-CCAAACCTTTTAAAAAT
*
18874 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGATCTCGAACCTTCTAAAAATTGCCAT
64 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGA-CTCGAACCTTCTAAAAATTACCAT
* * *
18939 TTTACCCCCGAACTTCCAAAAATCCCATTTTTTTATCCTGAACCTTCTA
128 TTTACCCCCGAACTTCCAAAAATCCCATTTTTTGACCCTAAACCTTCTA
* * *
18988 AAAATTACCATTTTGCCCCCAACTTCCAAAAATCCCATTTTTAACCCCTAA-CTTTCTAAAAATT
1 AAAATTACCATTTTACCCCCAACTTCCAAAAATCCCATTTTTGACCCCAAACCTTT-TAAAAATT
* * * *
19052 ACCATTTTACTCCTGAACTTCCAAAAATCCCATTTTTGACTCCGAACCTTC-CAAAACTACCATT
65 ACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACT-CGAACCTTCTAAAAATTACCATT
*
19116 TTGCCCCCG
129 TTACCCCCG
19125 TGCATCCGAA
Statistics
Matches: 288, Mismatches: 23, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
176 24 0.08
177 58 0.20
178 163 0.57
179 43 0.15
ACGTcount: A:0.33, C:0.32, G:0.04, T:0.31
Consensus pattern (176 bp):
AAAATTACCATTTTACCCCCAACTTCCAAAAATCCCATTTTTGACCCCAAACCTTTTAAAAATTA
CCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACTCGAACCTTCTAAAAATTACCATTTT
ACCCCCGAACTTCCAAAAATCCCATTTTTTGACCCTAAACCTTCTA
Found at i:21162 original size:379 final size:380
Alignment explanation
Indices: 20460--21170 Score: 787
Period size: 379 Copynumber: 1.9 Consensus size: 380
20450 CATAGATGCG
* * * *
20460 AACCATGATACATGTTTCCTACTATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTT
1 AACCAAGATACATGCTTCCTACTATACTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATATT
* ** * * * *
20525 TCACTAAAAATTTCACTTAAATATCTTCAAACACAGTATTTTTTCTTATTATTTTTTAACATTAT
66 TCACTAAAAAGTTCACTTAAATATCACCAAACACACTATTGTTTCTCATTATTTTTGAACATTAT
* * * ** **
20590 ATAGCACTTGTTTTGCGTTATCAACTTTCACCACAATTCAAGTTTCCTATACGAGTTGAGTGAAA
131 ATAGCACTTGTTTTGCATTATCAAATTTCACCACAAATCAAGTTTCAAATACGAGTCAAGTGAAA
* * ** *
20655 AAAGGGGTGGAAAAAAACATAAAATGGATTTTGGGAATGTTTATACAATCATTTCTATTTCTCTT
196 AAAGGGGTGGAAAAAAACATAAAAAGGATTTAGGGAATACTTATACAATCATTTCTATTTCCCTT
** * * * ** *
20720 AAAGGCTTTGCTCCGTATTTCAACCTTACATTGGATATAATCTATTTTCTTTTATCCTCTTTTGT
261 AAAGGCTTCACTCCGTATTTCAACCTCACATTGGATATAAACCATACTCTTTGATCCTCTTTTGT
20785 ATCAAGTATTTTGTGTCAAGTCTGGAAATGCAGAGTATCCAATTGGTTAGAGGCC
326 ATCAAGTATTTTGTGTCAAGTCTGGAAATGCAGAGTATCCAATTGGTTAGAGGCC
*
20840 AACCAAGATACCTGCTTCCTAGC-ATACTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATAT
1 AACCAAGATACATGCTTCCTA-CTATACTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATAT
* *
20904 TTCA-TCGAAAAGTTCGCTTAAATATCACCAAA-A-ACT-TGTGTTTCTCATTTATTTTTGAA-A
65 TTCACT-AAAAAGTTCACTTAAATATCACCAAACACACTAT-TGTTTCTCA-TTATTTTTGAACA
* * *
20964 TTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAAATCAAGTTTCAAATACGCA-TCAA
127 -TTATATAGCACTTGTTTTGCATTATCAAATTTCACCACAAATCAAGTTTCAAATACG-AGTCAA
* * * * *
21028 GTGAATAATGGTGG-GGAAACAAACATAAAAA-GAGTTTAGGG-ATACTTATATAATCGTGTT-T
190 GTGAAAAAAGG-GGTGGAAAAAAACATAAAAAGGA-TTTAGGGAATACTTATACAATCAT-TTCT
* * ** * * * *
21089 ATTTCCCTTAAAGGCTTCATTCCTTGATTTCATTCTCCCTTTTGATATAAACCCTACTCTTTGAT
252 ATTTCCCTTAAAGGCTTCACTCCGT-ATTTCAACCTCACATTGGATATAAACCATACTCTTTGAT
* *
21154 CTTCTTTTGTGTCAAGT
316 CCTCTTTTGTATCAAGT
21171 TTAAGTTCTT
Statistics
Matches: 269, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
377 1 0.00
378 45 0.17
379 137 0.51
380 85 0.32
381 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (380 bp):
AACCAAGATACATGCTTCCTACTATACTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATATT
TCACTAAAAAGTTCACTTAAATATCACCAAACACACTATTGTTTCTCATTATTTTTGAACATTAT
ATAGCACTTGTTTTGCATTATCAAATTTCACCACAAATCAAGTTTCAAATACGAGTCAAGTGAAA
AAAGGGGTGGAAAAAAACATAAAAAGGATTTAGGGAATACTTATACAATCATTTCTATTTCCCTT
AAAGGCTTCACTCCGTATTTCAACCTCACATTGGATATAAACCATACTCTTTGATCCTCTTTTGT
ATCAAGTATTTTGTGTCAAGTCTGGAAATGCAGAGTATCCAATTGGTTAGAGGCC
Found at i:22123 original size:378 final size:372
Alignment explanation
Indices: 21373--22499 Score: 1169
Period size: 378 Copynumber: 3.0 Consensus size: 372
21363 CCAATTTAAA
* * * ** * * *
21373 AAGTCTAAAAATAGAG-TGTATCCAATTTCTTAGAGGCGAACCATGATACATGTTTCCTACCATA
1 AAGTCTGAAAATACAGAAGTATCCAATTGGTTAGAGGCCAACCAAGATACCTGTTTCCTACCATA
* * * *
21437 TTTATT-TGTTGTTTCCATTGTAATTATGACTA-TAATCTTTCATTGAAAATTTCGCTTAAATAT
66 TTT-TTCTGTTGTTTCCATTGTAATTATGAC-ACTAATCTTTCAATGGAAAGTTCGCTTAAATTT
* * * * * *
21500 CTTCAAAACCAT-TAGTTTTTTCTTTTTCTTTTTAACATTATATACCACTTGTTTTGCCTTGTCA
129 C-CCAAAA-CATGT-G-TTTCTC-TTTTATTTTTAA-ATTATTTATCACTTGTTTTGCATTGTCA
** * *
21564 TCTTTCACCACAATTCAAGATTCCAATACGAGTCGAGTGATAAAACGGGTGGAAA-AAAACATAC
188 AATTTCACCACAATTCAA-ATTTCAATACGAGT-GAGTGA-AAAAAGGG-GGAAACAAAACATA-
** * * * * * * * *
21628 AATGGATTTTGGGGATGTTTATATAATCATTTATATTTCTCTTAAAGGCTTTGCTCCCTGTTTTC
248 AAAAGAGTTTGGGGGTGCTTATACAATCATGTATATTTCTCTTAAAGGCTTCGCTCCTTATTTTC
* * *
21693 AAACTCACTTTTGATATAAACTATTTTCTTTGATCATCTTTTGCTTCAAGTATTTTG-GTCC
313 -AACTCACTTTCGATATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGT-C
* * *
21754 AAGTCTGAAAATATA-AAGTATCCAATTGGTTAGAGGCCAACCAAGATACCTGCTTCCTAGCATA
1 AAGTCTGAAAATACAGAAGTATCCAATTGGTTAGAGGCCAACCAAGATACCTGTTTCCTACCATA
*
21818 TTTTTCTGTTGTTTCCATTGTAATTATGACACTAATCTGTCAATGGAAAGTTCGCTTAAATGTTA
66 TTTTTCTGTTGTTTCCATTGTAATTATGACACTAATCTTTCAATGGAAAGTTCGCTTAAAT-TT-
*
21883 CCCAAAACATGTGTTTCTCTTTTATGTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATT
129 CCCAAAACATGTGTTTCTCTTTTAT-TTTTAAA-TTATTTATCACTTGTTTTGCATTGTCAAATT
* * * * * * *
21948 TCATCACAATTCAACTTTCAGATATGTGTAATTGAAAAATGGGAGGAAACAAAACATAAAAAGAG
192 TCACCACAATTCAAATTTCA-ATACGAGTGAGTGAAAAAAGGG-GGAAACAAAACATAAAAAGAG
* * * * *
22013 TTTGGGGGTGCTTGTACAATCATGTCTATTCCCCTAAAAGGCTTCGCTCCTTATTTTCAACTTCA
255 TTTGGGGGTGCTTATACAATCATGTATATTTCTCTTAAAGGCTTCGCTCCTTATTTTCAAC-TCA
* *
22078 CCTTCGATATAAACTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTC
319 CTTTCGATATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTC
* * * * *
22132 ATGTCTGAAAATGCAGAA-TATCCAATTGGTTAGAAGCCAACCAAGATAACTGTTTCGTACCATA
1 AAGTCTGAAAATACAGAAGTATCCAATTGGTTAGAGGCCAACCAAGATACCTGTTTCCTACCATA
* * *
22196 TTTGTCTATTGTTTCCATTGTAATTATGATC-CTAATCTTTCAACGGAAAGTTCGCTTAAATATC
66 TTTTTCTGTTGTTTCCATTGTAATTATGA-CACTAATCTTTCAATGGAAAGTTCGCTTAAAT-T-
* *
22260 TTCAAAAACATGTGTTTCTCTTTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTCAAAT
128 TCCCAAAACATGTGTTTCTCTTTTATTTTT-AA-ATTATTTATCACTTGTTTTGCATTGTCAAAT
* * * * * ** * *
22325 TTAACCACAATCCAAGTTTTATAAACGCACCGAGTGAAAAAAGAGGGGAAACGAAACATAAAATG
191 TTCACCACAATTCAAATTTCA-ATACG-AGTGAGTGAAAAAAG-GGGGAAACAAAACATAAAAAG
* * *
22390 AGTTT-GGGGTGCTTATACAATCGTGTATATTTCTCTTAAAGGCTTCACT-CTCTATTTTCATCC
253 AGTTTGGGGGTGCTTATACAATCATGTATATTTCTCTTAAAGGCTTCGCTCCT-TATTTTCA-AC
* ** *
22453 TCGCTTTCGATATAAACCCTTTTCTTTGATCTTCTTTTGTGTCAAGT
316 TCACTTTCGATATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGT
22500 TTAAGTTCTT
Statistics
Matches: 627, Mismatches: 98, Indels: 45
0.81 0.13 0.06
Matches are distributed among these distances:
377 8 0.01
378 381 0.61
379 61 0.10
380 60 0.10
381 109 0.17
382 7 0.01
383 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (372 bp):
AAGTCTGAAAATACAGAAGTATCCAATTGGTTAGAGGCCAACCAAGATACCTGTTTCCTACCATA
TTTTTCTGTTGTTTCCATTGTAATTATGACACTAATCTTTCAATGGAAAGTTCGCTTAAATTTCC
CAAAACATGTGTTTCTCTTTTATTTTTAAATTATTTATCACTTGTTTTGCATTGTCAAATTTCAC
CACAATTCAAATTTCAATACGAGTGAGTGAAAAAAGGGGGAAACAAAACATAAAAAGAGTTTGGG
GGTGCTTATACAATCATGTATATTTCTCTTAAAGGCTTCGCTCCTTATTTTCAACTCACTTTCGA
TATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTC
Found at i:23890 original size:378 final size:379
Alignment explanation
Indices: 23192--24047 Score: 920
Period size: 378 Copynumber: 2.3 Consensus size: 379
23182 CCATGATACA
* * * * * * ** *
23192 TGTTTCCTACCATATTTTTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTC-ATTGAAATT
1 TGTTTCCTACCAT-TTTGTCTATTATTGCCATTATAATTACGACTCTAATCTTTCAACGGAAA-G
* * * * ** * * * * **
23256 TTCGCTTAAATTTCATCAAAAACAATAGTTTTTTTCTTTTATTTTTTAACA-TTATATATGACTT
64 TTCGCATAAATATCACCAAAAAC-AT-GTGTTTCACATTTACTTTTGAA-ATTTATTTACCACTT
* * * ** * *
23320 GTTTTGCCTTGTCAACTTTCACCACAATTCAAGTTTCCTATACGAGTTGAGTGAAAAAAGGGGTG
126 GTTTTGCATTGTCAAATTTCACCACAATTCAACTTTCAGATACGAGTCGAGAGAAAAAAGGGGTG
* ** * * * * *
23385 GAAAAAAACATAAAATTGGTTTTGGGGATGTTTATAGAATCATTTCTATTTCTCTTAAAGGCTTC
191 GAAAAAAACATAAAAATGAATTTGGGGATGGTTATACAATCATGTCTATTTCCCTAAAAGGCTTC
* * *
23450 GCTCCCTGTTTTAAACCTCACATTCGATATAAACTATTTTCTTTGATTATCTTTTATTTCAAGTA
256 GCTCCCTATTTTAAACCTCACATTCAATATAAACTATTTTCTTTGATTAGCTTTTATTTCAAGTA
* * *
23515 TTCTGTGTCAAGTCTGAAAATG-AAAAGTATCCAATTGGTTAGAGGCGAACCAAGATACC
321 TTCTGTGTCAAGTCTGAAAATGCAAAA-TATCCAATTGGTTAGAGGCCAACCAAGACAAC
* * * * *
23574 TGTTTCCTAGCATATTTGTCTATTATTTCCATTATAATTACGACTTTAATCTTTCAAC-TAACTG
1 TGTTTCCTACCAT-TTTGTCTATTATTGCCATTATAATTACGACTCTAATCTTTCAACGGAA-AG
**
23638 TTCGCATATTTATCACCAAAAACATGTGTTTCACATTTACTTTTGAAATTTATTTACCACTTGTT
64 TTCGCATAAATATCACCAAAAACATGTGTTTCACATTTACTTTTGAAATTTATTTACCACTTGTT
* *
23703 TTGCATTGTTAAATTTCACCACAATTCAACTTTTAGATACGCA-TCGAGAGAAAAAA-GGG-GGA
129 TTGCATTGTCAAATTTCACCACAATTCAACTTTCAGATACG-AGTCGAGAGAAAAAAGGGGTGGA
* *
23765 AACAAAACATAAAAAT-AATTTGGGGGTGGTTATACCATCATGTCTATTTCCCTAAAAGGCTTCG
193 AA-AAAACATAAAAATGAATTTGGGGATGGTTATACAATCATGTCTATTTCCCTAAAAGGCTTCG
* * * * *
23829 CTCCCTATTTTCAACTTCACTTTCAATATAAACTGTTTTCTTTGAATT-GCTTTTGTTTCAAGTA
257 CTCCCTATTTTAAACCTCACATTCAATATAAACTATTTTCTTTG-ATTAGCTTTTATTTCAAGTA
* ** *
23893 TTTTGTGTCATTTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACCAAGACAAC
321 TTCTGTGTCAAGTCTGAAAATGCAAAATATCCAATTGGTTAGAGGCCAACCAAGACAAC
* * * * * *
23952 TGTTTCGTACCATTTTTTTTTTTGTTGCCATTGTAATTACGACTCTAATCTTTCAACGGAAAGTT
1 TGTTTCCTACCATTTTGTCTATTATTGCCATTATAATTACGACTCTAATCTTTCAACGGAAAGTT
* *
24017 CGCTTAAATATCTCCAAAAACATGTGTTTCA
66 CGCATAAATATCACCAAAAACATGTGTTTCA
24048 AGTTCCAATG
Statistics
Matches: 392, Mismatches: 74, Indels: 21
0.80 0.15 0.04
Matches are distributed among these distances:
377 67 0.17
378 157 0.40
379 22 0.06
380 74 0.19
381 3 0.01
382 68 0.17
383 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (379 bp):
TGTTTCCTACCATTTTGTCTATTATTGCCATTATAATTACGACTCTAATCTTTCAACGGAAAGTT
CGCATAAATATCACCAAAAACATGTGTTTCACATTTACTTTTGAAATTTATTTACCACTTGTTTT
GCATTGTCAAATTTCACCACAATTCAACTTTCAGATACGAGTCGAGAGAAAAAAGGGGTGGAAAA
AAACATAAAAATGAATTTGGGGATGGTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCC
CTATTTTAAACCTCACATTCAATATAAACTATTTTCTTTGATTAGCTTTTATTTCAAGTATTCTG
TGTCAAGTCTGAAAATGCAAAATATCCAATTGGTTAGAGGCCAACCAAGACAAC
Found at i:24264 original size:6 final size:6
Alignment explanation
Indices: 24240--24319 Score: 51
Period size: 6 Copynumber: 13.2 Consensus size: 6
24230 ATTTAAAATC
*
24240 ATTTCAA ATTT-A A-TTAA ATTTAA ATTTAAA ATAGATAA ATTTAA ATTTAA
1 ATTT-AA ATTTAA ATTTAA ATTTAA ATTT-AA AT--TTAA ATTTAA ATTTAA
* **
24290 GA--TAA ATTTAG ATTTAA AAATAA ATTTAA A
1 -ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A
24320 ACCAATTTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 17
0.70 0.10 0.21
Matches are distributed among these distances:
4 3 0.05
5 7 0.12
6 33 0.58
7 9 0.16
8 4 0.07
9 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.41
Consensus pattern (6 bp):
ATTTAA
Found at i:24294 original size:17 final size:17
Alignment explanation
Indices: 24226--24319 Score: 84
Period size: 17 Copynumber: 5.3 Consensus size: 17
24216 TAATCTTATA
*
24226 TTAAATTTAAAAT-CAT
1 TTAAATTTAAAATAAAT
*
24242 TTCAAATTT-AATTAAAT
1 TT-AAATTTAAAATAAAT
24259 TTAAATTTAAAATAGATAAAT
1 TTAAATTT--AA-A-ATAAAT
*
24280 TTAAATTTAAGATAAAT
1 TTAAATTTAAAATAAAT
*
24297 TTAGATTTAAAAATAAAT
1 TTAAATTT-AAAATAAAT
24315 TTAAA
1 TTAAA
24320 ACCAATTTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
16 11 0.17
17 23 0.37
18 12 0.19
19 3 0.05
20 1 0.02
21 13 0.21
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:24299 original size:38 final size:34
Alignment explanation
Indices: 24226--24319 Score: 102
Period size: 38 Copynumber: 2.7 Consensus size: 34
24216 TAATCTTATA
* *
24226 TTAAATTT-AAAAT-CATTTCAAATTTAATTAAAT
1 TTAAATTTAAAAATAAATTT-AAATTTAAATAAAT
24259 TTAAATTTAAAATAGATAAATTTAAATTTAAGATAAAT
1 TTAAATTT-AAA-A-ATAAATTTAAATTTAA-ATAAAT
*
24297 TTAGATTTAAAAATAAATTTAAA
1 TTAAATTTAAAAATAAATTTAAA
24320 ACCAATTTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
33 8 0.15
35 13 0.25
36 2 0.04
37 13 0.25
38 16 0.31
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (34 bp):
TTAAATTTAAAAATAAATTTAAATTTAAATAAAT
Found at i:26961 original size:97 final size:97
Alignment explanation
Indices: 26786--26961 Score: 212
Period size: 97 Copynumber: 1.8 Consensus size: 97
26776 AACTTTGGAA
**
26786 AAGGATATTCGATTATCACGATTCAAAGAAAAGTCACACCTAGTAAGTTAAGGCGTAAATTTTCA
1 AAGGATATTCGATTATCACGATTCAAAGAAAAGTCACACCTAGTAAGTTAAGGCACAAATTTTCA
* *
26851 GAATCAGAGATAAAGAAACATTGTCTAGATTT
66 GAATCAAAAATAAAGAAACATTGTCTAGATTT
* ** ** ***
26883 AAGGGTATTCGATTATTTCGATTTGAAGAAAAGTCGTGCCTAGTAAGTTAAGGCACAAATTTTTC
1 AAGGATATTCGATTATCACGATTCAAAGAAAAGTCACACCTAGTAAGTTAAGGCACAAA-TTTTC
26948 A-AA-CACAAAATAAA
65 AGAATCA-AAAATAAA
26962 AGAATATTGC
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
96 2 0.03
97 57 0.88
98 6 0.09
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (97 bp):
AAGGATATTCGATTATCACGATTCAAAGAAAAGTCACACCTAGTAAGTTAAGGCACAAATTTTCA
GAATCAAAAATAAAGAAACATTGTCTAGATTT
Found at i:27260 original size:29 final size:31
Alignment explanation
Indices: 27228--27306 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 31
27218 GTTTGGAGTA
**
27228 AAAAATGGT-A-TTTTGGAAACTTCGAGGGT-
1 AAAAATGGTAATTTTTGGAAAAATCGA-GGTC
27257 -AAAATGGTAATTTTTGGAAAAATCGAGGTC
1 AAAAATGGTAATTTTTGGAAAAATCGAGGTC
27287 AAAAAT-GTAATTTTT-GAAAA
1 AAAAATGGTAATTTTTGGAAAA
27307 GTTTGGGGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 8 0.18
29 9 0.20
30 22 0.50
31 5 0.11
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.32
Consensus pattern (31 bp):
AAAAATGGTAATTTTTGGAAAAATCGAGGTC
Found at i:27321 original size:30 final size:29
Alignment explanation
Indices: 27287--27419 Score: 76
Period size: 29 Copynumber: 4.6 Consensus size: 29
27277 AATCGAGGTC
*
27287 AAAAATGTAATTTTTGAAAAGTTTGGGGTT
1 AAAAATGTAATTTTTG-AAAGTTTGGGGGT
* *
27317 AAAAATG-ACATTTTTGGATGTTTGGGGGT
1 AAAAATGTA-ATTTTTGAAAGTTTGGGGGT
** ** ***
27346 -AAAATGGTAATTTAAGAAA-AATCAAGGT
1 AAAAAT-GTAATTTTTGAAAGTTTGGGGGT
* * *
27374 CAAAAATGGAATTTTGGAAAGTTCGGGGG-
1 -AAAAATGTAATTTTTGAAAGTTTGGGGGT
27403 AAAGAATGTAATTTTTG
1 AAA-AATGTAATTTTTG
27420 GACAGTTTAG
Statistics
Matches: 73, Mismatches: 23, Indels: 15
0.66 0.21 0.14
Matches are distributed among these distances:
28 12 0.16
29 39 0.53
30 22 0.30
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (29 bp):
AAAAATGTAATTTTTGAAAGTTTGGGGGT
Found at i:27321 original size:89 final size:87
Alignment explanation
Indices: 27150--27421 Score: 241
Period size: 89 Copynumber: 3.1 Consensus size: 87
27140 TGAAAATGTG
* * * * *
27150 ATTTTTGGATACCTGGA-GGTAAAATGGTAATTTT-AAACACTCGGGGGCAAAACA-GTAATTTT
1 ATTTTTGGA-ACTTCGAGGGTAAAATGGTAATTTTGAAA-AATCGAGGTCAAAA-ATGTAATTTT
* * **
27212 GGGAAAGTTTGGAGTAAAAAATGGT
63 TGGAAAGTTTGGGGTAAAAAATGAC
27237 A-TTTTGGAAACTTCGAGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTCAAAAATGTAATTTT
1 ATTTTTGG-AACTTCGAGGGTAAAATGGTAA-TTTT-GAAAAATCGAGGTCAAAAATGTAATTTT
* *
27301 TGAAAAGTTTGGGGTTAAAAATGAC
63 TGGAAAGTTTGGGGTAAAAAATGAC
** * * * * *
27326 ATTTTTGGATGTTTGGGGGTAAAATGGTAATTTAAGAAAAATCAAGGTCAAAAATGGAA-TTTTG
1 ATTTTTGGAACTTCGAGGGTAAAATGGTAATTT-TGAAAAATCGAGGTCAAAAATGTAATTTTTG
* * *
27390 GAAAGTTCGGGGGAAAGAATGTA-
65 GAAAGTTTGGGGTAAAAAATG-AC
27413 ATTTTTGGA
1 ATTTTTGGA
27422 CAGTTTAGGG
Statistics
Matches: 153, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
86 11 0.07
87 45 0.29
88 31 0.20
89 57 0.37
90 9 0.06
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (87 bp):
ATTTTTGGAACTTCGAGGGTAAAATGGTAATTTTGAAAAATCGAGGTCAAAAATGTAATTTTTGG
AAAGTTTGGGGTAAAAAATGAC
Found at i:28562 original size:13 final size:12
Alignment explanation
Indices: 28544--28598 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
28534 TTTTTTTTAA
*
28544 TATTATTAATCTT
1 TATTATT-ATATT
28557 TATTATTATATT
1 TATTATTATATT
*
28569 TATTACTACTA-T
1 TATTATTA-TATT
28581 TATTATTAT-TAT
1 TATTATTATAT-T
28593 TATTAT
1 TATTAT
28599 AAATTAATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
11 1 0.03
12 26 0.72
13 9 0.25
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTATTATATT
Found at i:28587 original size:6 final size:6
Alignment explanation
Indices: 28556--28598 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
28546 TTATTAATCT
* *
28556 TTATTA TTA-TA TTTATTA CTACTA TTATTA TTATTA TTATTA T
1 TTATTA TTATTA -TTATTA TTATTA TTATTA TTATTA TTATTA T
28599 AAATTAATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 2 0.06
6 27 0.87
7 2 0.06
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (6 bp):
TTATTA
Found at i:28596 original size:9 final size:9
Alignment explanation
Indices: 28556--28598 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
28546 TTATTAATCT
28556 TTATTATTA
1 TTATTATTA
28565 -TATTTATTA
1 TTA-TTATTA
* *
28574 CTACTATTA
1 TTATTATTA
28583 TTATTATTA
1 TTATTATTA
28592 TTATTAT
1 TTATTAT
28599 AAATTAATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 2 0.07
9 25 0.86
10 2 0.07
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (9 bp):
TTATTATTA
Found at i:33801 original size:379 final size:379
Alignment explanation
Indices: 32640--34126 Score: 1565
Period size: 378 Copynumber: 3.9 Consensus size: 379
32630 AATAGAGTGT
** * * * * * * *
32640 ATCCAATTTCTTAGAGGCAAACCATGATAAATGTTTCCTACCAAATTTGTTTGTTGTTTCCATTG
1 ATCCAATTGGTTAG-GGCCAACCAAGATAACTATTTCGTACCATATTTGTCTGTTGTTTCCATTG
* ** * * * **
32705 TAATTATGACTCTAATCTTTTATTGAAAATTTCGGTTAAATATCTTCAAAAACAT-TAGTTAT-T
65 TAATTATGACTCTAATCTTTCAACGAAAAGTTAGCTTAAATATCACCAAAAACATGT-GTT-TCT
* * * * * * *
32768 TTTTTATTTTTTTAACA-TTATATT-CCTCTTGTTTTGCATTGTTAACTTTCATCACAATTCAAG
128 CTTTTA-TTTTTGAA-ATTTAT-TTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAA-
* * * ** * *
32831 TTTTC-TATAC-TAGTC-GAGTGAAAAAACGGTGAAAAAAAAAACATAAAAAGGGTTTTGGGGTG
189 CTTTCAGATACGT-GTCAGAGTGAAAAAA-GGGGGGAAACAAAACATAAAAAGAGTTTTGGGGTG
* * * * * * *
32893 TTTATACAATCATGTTTATTTCTCTTAAAGGCTTCGCTCCTTATTTTCAACCTCACTTTCGATAT
252 CTTATACAATCATGTCTATTTCCCTAAAAGGCTTCACTCCCTATTTTCAACCTCACTTTGGATAT
* * * ** * * *
32958 AAATTATTTTCTTTGGTCATCTACTATTTCAAGTATTTTGTGTCAAGTCT-AAAA-ATACAAA
317 AAACTATTTTCTTTGATCTTCTTTTATTTCAAGTATTTTGTGTCATGTCTGAAAATGTAGAAA
* * * * * *
33019 GTATCCAATTGGTTAGAGACCAACCAATATACCTGCTTTC-TAGCATATTTGTCTGTTGTTTCTA
1 --ATCCAATTGGTTAG-GGCCAACCAAGATAACT-ATTTCGTACCATATTTGTCTGTTGTTTCCA
* * *
33083 TTGTAATTATGATTCTAATCTTTCAATGGAAAG-TACGCTTAAATATCACCAAAAACATGTGTTT
62 TTGTAATTATGACTCTAATCTTTCAACGAAAAGTTA-GCTTAAATATCACCAAAAACATGTGTTT
* * *
33147 CTCTTTTATTTTTGAAATTTATTTATCAATTGTTTTGCATTGTAAAATTTCACGACAATTCAACT
126 CTCTTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAACT
* * * * * *
33212 TTCAAATATGCG-CAGAGTG-AAAAAGGGGGGAATCAAAACATGAAAAGAGTTTAGGGGTGCTTA
191 TTCAGATACGTGTCAGAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTTGGGGTGCTTA
* * * *
33275 TACAATCGTGTCTATTTCCCTAAAAGGCTTCACTCCTTATTTCCAACTTCACTTTGGATATAAAC
256 TACAATCATGTCTATTTCCCTAAAAGGCTTCACTCCCTATTTTCAACCTCACTTTGGATATAAAC
* * * *
33340 TATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGACAATGCAGAAT
321 TATTTTCTTTGATCTTCTTTTATTTCAAGTATTTTGTGTCATGTCTGAAAATGTAGAAA
* *
33399 ATCCAATTGGTTAGATGCCAACCAAGATAACTTTTTCGTACCATATTTGTCTGTTGTTTCCATTG
1 ATCCAATTGGTTAG-GGCCAACCAAGATAACTATTTCGTACCATATTTGTCTGTTGTTTCCATTG
**
33464 TAATTATGACTCTAATCTTTCAACGAAAAGTTAAATTAAATAAT-ACCAAAAACATGTGTTTCTC
65 TAATTATGACTCTAATCTTTCAACGAAAAGTTAGCTTAAAT-ATCACCAAAAACATGTGTTTCTC
*
33528 TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCGACTTTC
129 TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAACTTTC
*
33593 AGATACGTGTC-GAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTGGGGGTGCTTATAC
194 AGATACGTGTCAGAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTTGGGGTGCTTATAC
* * * * *
33657 AATCATGTCTGTTTCCCTAAAAGGCTTCGCTCCCTATTTTCGACTTCACTTGGGATATAAACTAT
259 AATCATGTCTATTTCCCTAAAAGGCTTCACTCCCTATTTTCAACCTCACTTTGGATATAAACTAT
*
33722 TTTCTTTGACCTTCTTTTATTTCAAGTATTTTGTGTCATGTCTGAAAATGTAGAAA
324 TTTCTTTGATCTTCTTTTATTTCAAGTATTTTGTGTCATGTCTGAAAATGTAGAAA
* * *
33778 ATCCAATTGGTTAGGCGCCAACCAAGATAACTATTTCGTACCATATTTGTATGTTGTTTCTATTA
1 ATCCAATTGGTTAGG-GCCAACCAAGATAACTATTTCGTACCATATTTGTCTGTTGTTTCCATTG
* * ** * *
33843 TAATTATGACTATAATCTTTCAACGGAATA-TTCTCTTAAATATCTCCAAAAACAGGTGTTTCTC
65 TAATTATGACTCTAATCTTTCAAC-GAAAAGTTAGCTTAAATATCACCAAAAACATGTGTTTCTC
* * * * *
33907 TTTTATTTTT-AAACATTATTTATCACTTTTTTTGCAATGTCAAATTTCACCACAATTCAAGTCT
129 TTTTATTTTTGAAA-TTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAACTTT
* ** * * * * ** * *
33971 AAGATACG-CACTGGGTAAAAAAAGAGGGGAAATGAAACATAAAACGA-TTTTAGGGTGCTTATA
193 CAGATACGTGTCAGAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTTGGGGTGCTTATA
* * * * * * * * *
34034 CAATCGTTTATCTTTCTCGT-AAAGGCTTCACTCCCTGTTTTCATCCTCACTTTTGATATAAACC
258 CAATCATGTCTATTTC-CCTAAAAGGCTTCACTCCCTATTTTCAACCTCACTTTGGATATAAACT
* * *
34098 CTTTTCTTTGATCTTCTTTTGTGTCAAGT
322 ATTTTCTTTGATCTTCTTTTATTTCAAGT
34127 TTAAGTTCTT
Statistics
Matches: 940, Mismatches: 144, Indels: 47
0.83 0.13 0.04
Matches are distributed among these distances:
377 4 0.00
378 397 0.42
379 374 0.40
380 60 0.06
381 100 0.11
382 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (379 bp):
ATCCAATTGGTTAGGGCCAACCAAGATAACTATTTCGTACCATATTTGTCTGTTGTTTCCATTGT
AATTATGACTCTAATCTTTCAACGAAAAGTTAGCTTAAATATCACCAAAAACATGTGTTTCTCTT
TTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAACTTTCAG
ATACGTGTCAGAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTTGGGGTGCTTATACAA
TCATGTCTATTTCCCTAAAAGGCTTCACTCCCTATTTTCAACCTCACTTTGGATATAAACTATTT
TCTTTGATCTTCTTTTATTTCAAGTATTTTGTGTCATGTCTGAAAATGTAGAAA
Found at i:35011 original size:432 final size:430
Alignment explanation
Indices: 34215--35011 Score: 1021
Period size: 432 Copynumber: 1.8 Consensus size: 430
34205 GATAATGTAG
* *
34215 TATATATTTCAAGAATATGCATATAAATAAATAGAGAGTAACTGTACTACAACATATTGCAATAT
1 TATATATTTCAAGAATATGCATATAAATAAATAGAGAGTAACTGCACTACAACATATAGCAATAT
* * * ** *
34280 TGAGGGGAAAAATAAATAAAAAGAGAGATGAAGACAAAAATCAAGGTTGACCCATTTAAAAAGTT
66 TGAGGGGAAAAATAAAAAAAAAAAGAGATAAAGACAAAAATCAAGGCGGACCCATTTAAAAAGTC
* * * *
34345 TGAAAATGGAGAATATCCAATTTGTTATAGGCCAAACATGAATACATGTTTCCTACCATATTTGT
131 TAAAAAT-GAGAATATCCAATTTCTTAGAGGCCAAACATGAATACATGCTTCCTACCATATTTGT
* * * *
34410 CTGTTGTTTCCATTGTAATTATGACTCCAATCTTTCATTGGAAATTTTGTTTAAATATCTTCAAA
195 CTGTTGTTTCCATAGTAATTATGACTCCAATCTTTCACTGGAAATTTCGCTTAAATATCTTCAAA
* ** *
34475 AACATTAGTTTTTCTTTTATTTTTTTAACTTTATATATCACTTGTTTTGCATTATCAACATTCAC
260 AACATTA-TTTTTCTTTTATTTTTCTAACAATATATACCACTTGTTTTGCATTATCAACATTCAC
* **
34540 AACAATTCAAGTTTCCTATATGCGTCGAGTGAAAAAAGGGTGGCAAAAAAATTGCCTAAACAATC
324 AACAATTCAACTTTCAGATATGCGTCGAGTGAAAAAAGGGTGGCAAAAAAATTGCCTAAACAATC
34605 TAAAGAAGAAAGTAACGGCTCACAGTAAAAGTGCCATATTTC
389 TAAAGAAGAAAGTAACGGCTCACAGTAAAAGTGCCATATTTC
* * * * * * * *
34647 TATATGTTTCCAGAATATTCATGTAAATAAATAGAGTGTAATTGCATTGCAACATATAGCAATAT
1 TATATATTTCAAGAATATGCATATAAATAAATAGAGAGTAACTGCACTACAACATATAGCAATAT
** * **
34712 TGAGGGGTGGAAATAAAAAAAAAAAGAGAAGTAAAGAC-AAAATCGAGGCGGACCTGTTTAAAAA
66 TGAGGGG-AAAAATAAAAAAAAAAAGAG-A-TAAAGACAAAAATCAAGGCGGACCCATTTAAAAA
* * * *
34776 GTCTAAAAAT-AGACTGCATCCAATTTCTTAGATGCGAACCATG-ATACATGCTTCCTACCATAT
128 GTCTAAAAATGAGAAT--ATCCAATTTCTTAGAGGCCAAACATGAATACATGCTTCCTACCATAT
* * * *
34839 TTTTCTGTTGTTTCCATAGTAATTATGACTCTAATCTTTCACTGGTAATTTCGCTTAGATATCTT
191 TTGTCTGTTGTTTCCATAGTAATTATGACTCCAATCTTTCACTGGAAATTTCGCTTAAATATCTT
** *
34904 CAAATAGTAGTT-TTTTTCTTTTA-TTTTCTAACAATATATACCACTTGTTTTGCATTGTCAA-A
256 CAAA-AACA-TTATTTTTCTTTTATTTTTCTAACAATATATACCACTTGTTTTGCATTATCAACA
* *
34966 TTTCACCACAATTCAACTTTCAGGTATGCGTCGAGTGAAAAAAGGG
319 -TTCACAACAATTCAACTTTCAGATATGCGTCGAGTGAAAAAAGGG
35012 GGAAACAAAA
Statistics
Matches: 308, Mismatches: 49, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
431 1 0.00
432 139 0.45
433 107 0.35
434 53 0.17
435 8 0.03
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (430 bp):
TATATATTTCAAGAATATGCATATAAATAAATAGAGAGTAACTGCACTACAACATATAGCAATAT
TGAGGGGAAAAATAAAAAAAAAAAGAGATAAAGACAAAAATCAAGGCGGACCCATTTAAAAAGTC
TAAAAATGAGAATATCCAATTTCTTAGAGGCCAAACATGAATACATGCTTCCTACCATATTTGTC
TGTTGTTTCCATAGTAATTATGACTCCAATCTTTCACTGGAAATTTCGCTTAAATATCTTCAAAA
ACATTATTTTTCTTTTATTTTTCTAACAATATATACCACTTGTTTTGCATTATCAACATTCACAA
CAATTCAACTTTCAGATATGCGTCGAGTGAAAAAAGGGTGGCAAAAAAATTGCCTAAACAATCTA
AAGAAGAAAGTAACGGCTCACAGTAAAAGTGCCATATTTC
Found at i:38619 original size:378 final size:377
Alignment explanation
Indices: 37890--39099 Score: 1541
Period size: 378 Copynumber: 3.3 Consensus size: 377
37880 AAATATCACC
* * * * * * *
37890 AAATTTATTTATCATTTATTTTGCATTGTCAAATTTCACCAGAATTTAACTTTTAGATATGTGTC
1 AAATTTATTTATCACTTGTTTTG-ATTGTCAAATTTCACCACAATTCAACTATCAGATACGTGTC
* * * *
37955 GAGTGAAAAAAGGGTGGAAACAAAACATAAAAAGAGTTTGGGGGTGCTTATACAATCATGTATGT
65 GAGTGAAAAAAGGGGGGAAACAAAACATAAAAACAGTTTGGGGGTGCTTATACAATCATGTCTAT
** * * *
38020 TTTGCTAAAAGGTTTCACTCCCTATTTTCAACTTCACTTTTGATATAAACCGTTTTCTTTGATCT
130 TTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTTCACTTTTGATATAAACTGTTTTCTTTGATCT
* * * * *
38085 TCTTTTGTTTTAAGTATTTTGTGTCAAGTCTGAAAATGCAAAATATCCAATTGCTTATAGGCCAA
195 TCTTTTGTTTAAAGTA-TTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAA
* *
38150 CCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATTGTAATTATGAGTCTAATCTTTC
259 CCAAGATAACTGTTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTC
38215 AACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTTTTATTTTTG
324 AACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTTTTATTTTTG
*
38269 AAATTTATTTATCTCTTGTTTTGAATTGTCAAATTTCACCACAATTCAACTATCAGATACGTGTC
1 AAATTTATTTATCACTTGTTTTG-ATTGTCAAATTTCACCACAATTCAACTATCAGATACGTGTC
*
38334 GAGTGAAAAAAAGGGGGGAAACAAAACATAAAAATAGTTTGGGGGTGCTTATACAATCATGTCTA
65 GAGTG-AAAAAAGGGGGGAAACAAAACATAAAAACAGTTTGGGGGTGCTTATACAATCATGTCTA
* * * * *
38399 TTTCCCTAAAAGGCATCGCTCCCTATTTTAAACTTCACTTTCGATATAAACTATTCTCTTTGATC
129 TTTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTTCACTTTTGATATAAACTGTTTTCTTTGATC
* * * * *
38464 TTCTTTTGTTTCAAGCA-TTGTGTCATGTCAGAAAATGTAGAATATCCAATTGGTTAGAGGTCAA
194 TTCTTTTGTTTAAAGTATTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAA
*
38528 CCAAGATAACTGTTTCATACCATATTGGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTC
259 CCAAGATAACTGTTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTC
* * * *
38593 AATGGAAAGTTCGCTTAAAAAATACCAAAAACATGTGTTTCTCTTTTATTTTTG
324 AACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTTTTATTTTTG
* * * * *
38647 AAATTTATTTATCACTTG--TT--TTG-C---GTT---CTC---TCAAATA-C-G-CAC----CA
1 AAATTTATTTATCACTTGTTTTGATTGTCAAATTTCACCACAATTCAACTATCAGATACGTGTCG
* *
38691 AATGAAAAAA-GGGGGAAACAAAACATAAAAAGCA-TTTGGGGGTGCTTATACAATCATATCTAT
66 AGTGAAAAAAGGGGGGAAACAAAACATAAAAA-CAGTTTGGGGGTGCTTATACAATCATGTCTAT
* * * *
38754 TTCCCTAAAAGGCTTCGCTCCCTGTTTTCAACTTCAGTTTTGATATAAATTGTTTTCTTTTATCT
130 TTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTTCACTTTTGATATAAACTGTTTTCTTTGATCT
* *
38819 TCTTTTGTTTAAAGTATTTTGTGTCATGTTTGAAATTGCAGAATATCCAATTGGTTAGAGGCCAA
195 TCTTTTGTTTAAAGTA-TTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAA
* *
38884 CCAAGATAACTGTTTCTTACCATATTTGTCTGTTATTTCCATTGTAATTATGACTCTAATCTTTC
259 CCAAGATAACTGTTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTC
* * *
38949 AACGGAAAGTTTGCTTAAATAATACCAAAAATAGGTGTTTCTCATTTATTTTTG
324 AACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTTTTATTTTTG
* * * * * * * ** **
39003 AAATTTATTTATCACTTGTTTTGTGTTTTGAACTTTCATCACAATTCAAGTTTCCTATACAAGTC
1 AAATTTATTTATCACTTGTTTTG-ATTGTCAAATTTCACCACAATTCAACTATCAGATACGTGTC
* * *
39068 GAGTGGAAAAAGGGGTGAAAAAAAACATAAAA
65 GAGTGAAAAAAGGGGGGAAACAAAACATAAAA
39100 TGGGTTTTAG
Statistics
Matches: 718, Mismatches: 86, Indels: 54
0.84 0.10 0.06
Matches are distributed among these distances:
354 119 0.17
355 7 0.01
356 174 0.24
358 2 0.00
360 2 0.00
361 3 0.00
362 1 0.00
363 6 0.01
365 2 0.00
366 2 0.00
368 2 0.00
369 2 0.00
371 5 0.01
372 2 0.00
373 3 0.00
374 2 0.00
376 2 0.00
378 178 0.25
379 79 0.11
380 125 0.17
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (377 bp):
AAATTTATTTATCACTTGTTTTGATTGTCAAATTTCACCACAATTCAACTATCAGATACGTGTCG
AGTGAAAAAAGGGGGGAAACAAAACATAAAAACAGTTTGGGGGTGCTTATACAATCATGTCTATT
TCCCTAAAAGGCTTCGCTCCCTATTTTCAACTTCACTTTTGATATAAACTGTTTTCTTTGATCTT
CTTTTGTTTAAAGTATTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACC
AAGATAACTGTTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAA
CGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTTTTATTTTTG
Found at i:38883 original size:734 final size:725
Alignment explanation
Indices: 37397--39099 Score: 2017
Period size: 734 Copynumber: 2.3 Consensus size: 725
37387 ATAGAGTGTG
* * *
37397 TCCAATTGCTTAGAGGCGAACCATGAT-ACATGTTTCCTACCATATTTGTCTGTTGTTTCTATTG
1 TCCAATTGCTTAGAGGCCAACCAAGATAAC-TGTTTCCTACCATATTTGTCTGTTGTTTCCATTG
*** * * * *
37461 TAATTATGACTCTAATCTTTC-ATTAAAAATTTCGCTAAAAT-AT-CTTCAAAAACATTTGTCTT
65 TAATTATGACTCTAATCTTTCAACGGAAAGTTT-GCTTAAATAATAC--CAAAAACA--CG--TG
* * * * * * *
37523 TTTTTCTATTATTTTTTAACA-TTATATACCACTTGTATTGCATTGTCAACTTTCAACACAATTC
123 TTTCTCTTTTATTTTTGAA-ATTTATTTATCACTTGTTTTGAATTGTCAACTTTCAACACAATTC
* * * * * * *
37587 AAGTTCCCTATATGAGTAGAGTGAAAAAATGGTGGAAAAAAACATAAAAAGGGTTTTGCAGTATT
187 AAGTT-CCTATACGAGTCGAGTGAAAAAAGGGGGGAAAAAAACATAAAAAGAGTTTGGCAGTACT
* * * * * *
37652 TATATAATCATGTCTATTTCTCTTAAAGGCTTCGCTCCCTGTTTTCAACCTCACTTTCGATATAA
251 TATACAATCATGTCTATTTCCCTAAAAGGCATCGCTCCCTATTTTAAACCTCACTTTCGATATAA
* * * * *
37717 ACTATTTTCTTTGATCATCTTTTGTTTGAAGTATTTTGTGTCAACTCTGAAAATGCAGAGTATCC
316 ACTATTCTCTTTGATCATCTTTTGTTTCAAGCA-TTTGTGTCAACTCAGAAAATGCAGAATATCC
* * * *
37782 AATTGGTTAGAGGCCAACCAAGATACCTACTTCCTAGCATATTTATCTGTTGTTTCCATTGTAAT
380 AATTGGTTAGAGGCCAACCAAGATAACTACTTCATACCATATTGATCTGTTGTTTCCATTGTAAT
* * *
37847 TATGACTCTAATCTTTGAACGGAAAGTTCACTTAAATATCACCAAATTTATTTATCATTTATTTT
445 TATGACTCTAATCTTTCAACGGAAAGTTCACTTAAAAATCACCAAATGTATTTATCATTTATTTT
* * * *** * *
37912 GCATTGTCAAATTTCACCAGAATTTAACTTTTAGATATGTGTCGAGTGAAAAAAGGGTGGAAACA
510 GAATTGT-AAATTTCACCAG-ATTTAACTTTTAAATACGCACCAAATGAAAAAAGGGTGGAAACA
* * ** *
37977 AAACATAAAAAGAGTTTGGGGGTGCTTATACAATCATGTATGTTTTGCTAAAAGGTTTCACTCCC
573 AAACATAAAAAGAGTTTGGGGGTGCTTATACAATCATATATATTTCCCTAAAAGGCTTCACTCCC
*
38042 TATTTTCAACTTCACTTTTGATATAAACCGTTTTCTTTGATCTTCTTTTGTTTTAAGTATTTTGT
638 TATTTTCAACTTCACTTTTGATATAAACCGTTTTCTTTGATCTTCTTTTGTTTAAAGTATTTTGT
38107 GTCAAGTCTGAAAATGCAAAATA
703 GTCAAGTCTGAAAATGCAAAATA
* *
38130 TCCAATTGCTTATAGGCCAACCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATTGT
1 TCCAATTGCTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATTGT
*
38195 AATTATGAGTCTAATCTTTCAACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTT
66 AATTATGACTCTAATCTTTCAACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTT
* * * * **
38260 TTATTTTTGAAATTTATTTATCTCTTGTTTTGAATTGTCAAATTTCACCACAATTCAACTATCAG
131 TTATTTTTGAAATTTATTTATCACTTGTTTTGAATTGTCAACTTTCAACACAATTCAAGT-TCCT
* * ** *
38325 ATACGTGTCGAGTGAAAAAAAGGGGGGAAACAAAACATAAAAATAGTTTGGGGGTGCTTATACAA
195 ATACGAGTCGAGTG-AAAAAAGGGGGGAAA-AAAACATAAAAAGAGTTTGGCAGTACTTATACAA
*
38390 TCATGTCTATTTCCCTAAAAGGCATCGCTCCCTATTTTAAACTTCACTTTCGATATAAACTATTC
258 TCATGTCTATTTCCCTAAAAGGCATCGCTCCCTATTTTAAACCTCACTTTCGATATAAACTATTC
* ** *
38455 TCTTTGATCTTCTTTTGTTTCAAGCA-TTGTGTCATGTCAGAAAATGTAGAATATCCAATTGGTT
323 TCTTTGATCATCTTTTGTTTCAAGCATTTGTGTCAACTCAGAAAATGCAGAATATCCAATTGGTT
* ** *
38519 AGAGGTCAACCAAGATAACTGTTTCATACCATATTGGTCTGTTGTTTCCATTGTAATTATGACTC
388 AGAGGCCAACCAAGATAACTACTTCATACCATATTGATCTGTTGTTTCCATTGTAATTATGACTC
* * * * *
38584 TAATCTTTCAATGGAAAGTTCGCTTAAAAAAT-ACCAAAAACATGTGTTTCTCTTTTATTTTTGA
453 TAATCTTTCAACGGAAAGTTCACTT-AAAAATCACC---AA-ATGTATTTATCATTTA-TTTTG-
* ** **
38648 AATT-T-ATTTATCACTTG-TTTTGCGTTCTCTCAAATACGCACCAAATGAAAAAAGGG-GGAAA
511 AATTGTAAATT-TCACCAGATTTAAC-TT-T-T-AAATACGCACCAAATGAAAAAAGGGTGGAAA
* *
38709 CAAAACATAAAAAGCA-TTTGGGGGTGCTTATACAATCATATCTATTTCCCTAAAAGGCTTCGCT
571 CAAAACATAAAAAG-AGTTTGGGGGTGCTTATACAATCATATATATTTCCCTAAAAGGCTTCACT
* * ** *
38773 CCCTGTTTTCAACTTCAGTTTTGATATAAATTGTTTTCTTTTATCTTCTTTTGTTTAAAGTATTT
635 CCCTATTTTCAACTTCACTTTTGATATAAACCGTTTTCTTTGATCTTCTTTTGTTTAAAGTATTT
* * * *
38838 TGTGTCATGTTTGAAATTGCAGAATA
700 TGTGTCAAGTCTGAAAATGCAAAATA
* * *
38864 TCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCTTACCATATTTGTCTGTTATTTCCATTGT
1 TCCAATTGCTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATTGT
* * *
38929 AATTATGACTCTAATCTTTCAACGGAAAGTTTGCTTAAATAATACCAAAAATAGGTGTTTCTCAT
66 AATTATGACTCTAATCTTTCAACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTT
** * * *
38994 TTATTTTTGAAATTTATTTATCACTTGTTTTGTGTTTTGAACTTTCATCACAATTCAAGTTTCCT
131 TTATTTTTGAAATTTATTTATCACTTGTTTTGAATTGTCAACTTTCAACACAATTCAAG-TTCCT
* * *
39059 ATACAAGTCGAGTGGAAAAAGGGGTGAAAAAAAACATAAAA
195 ATACGAGTCGAGTGAAAAAAGGGG-GGAAAAAAACATAAAA
39100 TGGGTTTTAG
Statistics
Matches: 825, Mismatches: 122, Indels: 46
0.83 0.12 0.05
Matches are distributed among these distances:
728 1 0.00
729 183 0.22
730 19 0.02
731 112 0.14
732 7 0.01
733 129 0.16
734 350 0.42
735 24 0.03
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (725 bp):
TCCAATTGCTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATTGT
AATTATGACTCTAATCTTTCAACGGAAAGTTTGCTTAAATAATACCAAAAACACGTGTTTCTCTT
TTATTTTTGAAATTTATTTATCACTTGTTTTGAATTGTCAACTTTCAACACAATTCAAGTTCCTA
TACGAGTCGAGTGAAAAAAGGGGGGAAAAAAACATAAAAAGAGTTTGGCAGTACTTATACAATCA
TGTCTATTTCCCTAAAAGGCATCGCTCCCTATTTTAAACCTCACTTTCGATATAAACTATTCTCT
TTGATCATCTTTTGTTTCAAGCATTTGTGTCAACTCAGAAAATGCAGAATATCCAATTGGTTAGA
GGCCAACCAAGATAACTACTTCATACCATATTGATCTGTTGTTTCCATTGTAATTATGACTCTAA
TCTTTCAACGGAAAGTTCACTTAAAAATCACCAAATGTATTTATCATTTATTTTGAATTGTAAAT
TTCACCAGATTTAACTTTTAAATACGCACCAAATGAAAAAAGGGTGGAAACAAAACATAAAAAGA
GTTTGGGGGTGCTTATACAATCATATATATTTCCCTAAAAGGCTTCACTCCCTATTTTCAACTTC
ACTTTTGATATAAACCGTTTTCTTTGATCTTCTTTTGTTTAAAGTATTTTGTGTCAAGTCTGAAA
ATGCAAAATA
Found at i:38990 original size:356 final size:355
Alignment explanation
Indices: 38340--39025 Score: 1088
Period size: 356 Copynumber: 1.9 Consensus size: 355
38330 TGTCGAGTGA
* *
38340 AAAAAAGGGGGGAAACAAAACATAAAAATAGTTTGGGGGTGCTTATACAATCATGTCTATTTCCC
1 AAAAAAGGGGGGAAACAAAACATAAAAACAGTTTGGGGGTGCTTATACAATCATATCTATTTCCC
38405 TAAAAGGCATCGCTCCCTATTTTAAACTTCACTTTCGATATAAACTATTCTCTTTGATCTTCTTT
66 TAAAAGGCATCGCTCCCTATTTTAAACTTCACTTTCGATATAAACTATTCTCTTTGATCTTCTTT
* * *
38470 TGTTTCAAGCATTGTGTCATGTCAGAAAATGTAGAATATCCAATTGGTTAGAGGTCAACCAAGAT
131 TGTTTAAAGCATTGTGTCATGTCAGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACCAAGAT
* *
38535 AACTGTTTCATACCATATTGGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAA
196 AACTGTTTCATACCATATTGGTCTGTTATTTCCATTGTAATTATGACTCTAATCTTTCAACGGAA
* *
38600 AGTTCGCTTAAAAAATACCAAAAACATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTG
261 AGTTCGCTTAAAAAATACCAAAAACAGGTGTTTCTCATTTATTTTTGAAATTTATTTATCACTTG
38665 TTTTGCGTTCTCTCAAATACGCACCAAATG
326 TTTTGCGTTCTCTCAAATACGCACCAAATG
38695 AAAAAA-GGGGGAAACAAAACATAAAAAGCA-TTTGGGGGTGCTTATACAATCATATCTATTTCC
1 AAAAAAGGGGGGAAACAAAACATAAAAA-CAGTTTGGGGGTGCTTATACAATCATATCTATTTCC
* * * * * * * * *
38758 CTAAAAGGCTTCGCTCCCTGTTTTCAACTTCAGTTTTGATATAAATTGTTTTCTTTTATCTTCTT
65 CTAAAAGGCATCGCTCCCTATTTTAAACTTCACTTTCGATATAAACTATTCTCTTTGATCTTCTT
* ** *
38823 TTGTTTAAAGTATTTTGTGTCATGTTTGAAATTGCAGAATATCCAATTGGTTAGAGGCCAACCAA
130 TTGTTTAAAGCA--TTGTGTCATGTCAGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACCAA
* *
38888 GATAACTGTTTCTTACCATATTTGTCTGTTATTTCCATTGTAATTATGACTCTAATCTTTCAACG
193 GATAACTGTTTCATACCATATTGGTCTGTTATTTCCATTGTAATTATGACTCTAATCTTTCAACG
* * *
38953 GAAAGTTTGCTTAAATAATACCAAAAATAGGTGTTTCTCATTTATTTTTGAAATTTATTTATCAC
258 GAAAGTTCGCTTAAAAAATACCAAAAACAGGTGTTTCTCATTTATTTTTGAAATTTATTTATCAC
39018 TTGTTTTG
323 TTGTTTTG
39026 TGTTTTGAAC
Statistics
Matches: 301, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
354 119 0.40
355 7 0.02
356 175 0.58
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (355 bp):
AAAAAAGGGGGGAAACAAAACATAAAAACAGTTTGGGGGTGCTTATACAATCATATCTATTTCCC
TAAAAGGCATCGCTCCCTATTTTAAACTTCACTTTCGATATAAACTATTCTCTTTGATCTTCTTT
TGTTTAAAGCATTGTGTCATGTCAGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACCAAGAT
AACTGTTTCATACCATATTGGTCTGTTATTTCCATTGTAATTATGACTCTAATCTTTCAACGGAA
AGTTCGCTTAAAAAATACCAAAAACAGGTGTTTCTCATTTATTTTTGAAATTTATTTATCACTTG
TTTTGCGTTCTCTCAAATACGCACCAAATG
Found at i:40324 original size:23 final size:23
Alignment explanation
Indices: 40296--40347 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
40286 CGTCCATCAT
40296 TGCTGACTAGACCTTCTAGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
*
40319 TGCTGACTAGACTTTCTAGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
40342 TGCTGA
1 TGCTGA
40348 TTGGATGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (23 bp):
TGCTGACTAGACCTTCTAGAAGC
Found at i:41890 original size:59 final size:59
Alignment explanation
Indices: 41798--41918 Score: 242
Period size: 59 Copynumber: 2.1 Consensus size: 59
41788 ATACTCCCCG
41798 TGTTTAGCGACGACCGTGTTGGGAATGGGGGAGTAAAAAGGTGGGGTTAGTTTTGCTAC
1 TGTTTAGCGACGACCGTGTTGGGAATGGGGGAGTAAAAAGGTGGGGTTAGTTTTGCTAC
41857 TGTTTAGCGACGACCGTGTTGGGAATGGGGGAGTAAAAAGGTGGGGTTAGTTTTGCTAC
1 TGTTTAGCGACGACCGTGTTGGGAATGGGGGAGTAAAAAGGTGGGGTTAGTTTTGCTAC
41916 TGT
1 TGT
41919 GTGCCAATTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.21, C:0.10, G:0.39, T:0.30
Consensus pattern (59 bp):
TGTTTAGCGACGACCGTGTTGGGAATGGGGGAGTAAAAAGGTGGGGTTAGTTTTGCTAC
Found at i:42045 original size:18 final size:17
Alignment explanation
Indices: 42012--42074 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 17
42002 TAAAATACCA
42012 AAAATAAAT-A-GAAAT
1 AAAATAAATAATGAAAT
42027 AAAATAAATAACTGAAAT
1 AAAATAAATAA-TGAAAT
*
42045 -AAATTAATAATGAAGTAT
1 AAAATAAATAATGAA--AT
42063 AAAATTAAATAA
1 AAAA-TAAATAA
42075 ATAAAACAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 9 0.23
16 5 0.13
17 9 0.23
18 7 0.18
19 3 0.08
20 6 0.15
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (17 bp):
AAAATAAATAATGAAAT
Found at i:46531 original size:23 final size:23
Alignment explanation
Indices: 46498--46551 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
46488 CGTCCATCAT
*
46498 TGCTGACTAGACCTTCTAGAAGG
1 TGCTGACTAGACCTTCTAGAAGC
* *
46521 TGCTGATTAGACCTTCTCGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
46544 TGCTGACT
1 TGCTGACT
46552 GGATGCCACG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (23 bp):
TGCTGACTAGACCTTCTAGAAGC
Found at i:50563 original size:45 final size:45
Alignment explanation
Indices: 50499--50590 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
50489 GCCTTTGTCT
* *
50499 ACTTTCAAGAAGCTTGGAATTAGATTAGTGAAGCCCACTGTGATG
1 ACTTTCAAGAAGCTTGGAATCAGATTAGTGAAGCCCACTGCGATG
50544 ACTTTCAAGAAGCTTGGAATCAGATTAGTGAAGCCCACTGCGATG
1 ACTTTCAAGAAGCTTGGAATCAGATTAGTGAAGCCCACTGCGATG
50589 AC
1 AC
50591 ATTGCAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (45 bp):
ACTTTCAAGAAGCTTGGAATCAGATTAGTGAAGCCCACTGCGATG
Found at i:60545 original size:379 final size:372
Alignment explanation
Indices: 59826--60903 Score: 1167
Period size: 379 Copynumber: 2.8 Consensus size: 372
59816 ATGATACATA
*** *
59826 TTTCCTACCATATTTGTTTGTTGTTTCCATTGTAATTA-AGACTCTAATCTTTCTTTGAAAATTT
1 TTTCCTACCATATTT-TTTGTTGTTTCCATTGTAATTATA-ACTCTAATCTTTCAACGAAAACTT
* * * * * * *
59890 CGCTTAAATATCTTCAAAAACAGTAGTTTTTTTCTTTTATCATTTAACATTATATACCACTTATT
64 CGCTTAAATATCTCCAAAAACA-T-GTGTTTCTCATTTAT-TTTTAA-ATTATTTATCACTTATT
** * * ** * *
59955 TTGTGTTGTCAACTTTCACTACAATTCAAGTTTCCTATACGAGTCGAGTGAAAAAAGGGGTTGAA
125 TTGCATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGT-AAAAAAGGGG--GGA
* * * * * * *
60020 AAAAAAACATAAAATGGGTTTTGGAGATGTTTATACAATCATTTCTATTTCTTTTAAAGGCTTCT
187 AAAAAAACATAAAATGAG-TTTGGGGGTGCTTATACAATCATGTCTATTTC-CTTAAAGGCTTCA
* * * * * *
60085 CTCTCTGTTTTCAACCTCACATTGGATATATACTATTTTCTTTAATTATCTTTTGTTTCAAGCAT
250 CTC-CTATTTTCAACCTCACTTTTGATATAAACTATTTTCTTTGATT-TCTTTTGTTTCAAGTAT
* * *
60150 TTTGTGTCGAGTCTGAAAATGCAGAGTATCAAATTGGTTAGTGGCCAACCAAGATAC-CTGC
313 TTTGTGTCGAGTCTGAAAATGCAGAATATCAAATTGGTTAGAGGCCAACC-A-ATACAATGC
* *
60211 -TTCCTAGCATATTTTTATGTTGTTTCCGTTGTAATTATAACTCTAATCTTTCAACGAAAACTTC
1 TTTCCTACCATATTTTT-TGTTGTTTCCATTGTAATTATAACTCTAATCTTTCAACGAAAACTTC
* * *
60275 GCTTAAATATCACCAAAAATATGTGTTTCTCATTTATTTTTGAAATTTATTTATCACTTGTTTTG
65 GCTTAAATATCTCCAAAAACATGTGTTTCTCATTTATTTTT-AAA-TTATTTATCACTTATTTTG
* * *
60340 CATTGTCAAATTTCACCACAATTCAACTTTTAGATACGCGTCGAGTAAAAAAAGGGGGGAAACAA
128 CATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGT-AAAAAAGGGGGGAAAAAA
* * *
60405 AACATAAAAAGAGTTTGGGGGTGCTTATACAATCATGTCTATTTGCCTAAAAGGCTTCGCTCCAT
192 AACATAAAATGAGTTTGGGGGTGCTTATACAATCATGTCTATTT-CCTTAAAGGCTTCACTCC-T
* *
60470 ATTTTCAACTTCACTTTTGATATAAACTGTTTTCTTTGATATTCTTTTGTTTCAAGTATTTTGTG
255 ATTTTCAACCTCACTTTTGATATAAACTATTTTCTTTGAT-TTCTTTTGTTTCAAGTATTTTGTG
* * *
60535 TC-ATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCTAACCAATACAATTC
319 TCGA-GTCTGAAAATGCAGAATATCAAATTGGTTAGAGGCCAACCAATACAATGC
* * * * *
60589 TTTCGTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGTTC
1 TTTCCTACCATATTT-TTTGTTGTTTCCATTGTAATTATAACTCTAATCTTTCAACGAAAACTTC
* * * *
60654 GCTTAAATATCTCCAAAAGCATGTGTTTCTCCTCTATTTGTAAACATTATTTATCACTTATTTTG
65 GCTTAAATATCTCCAAAAACATGTGTTTCTCATTTATTT-TTAA-ATTATTTATCACTTATTTTG
* ** * * * **
60719 CATTGTCAAATTTCACCACAATTAAAGTTTCAGATACGCAACGAGTGAAAAAGAGTGGAAATGAA
128 CATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGTAAAAAAGGGGGGAAAAAAA
* * *
60784 ACATAAAATGAGTTT-GGGGTGCTTAGACAATCGTGTTTATTTCCCTTAAAGGCTTCACTCCTTA
193 ACATAAAATGAGTTTGGGGGTGCTTATACAATCATGTCTATTT-CCTTAAAGGCTTCACTCC-TA
* ** ** *
60848 TTTTCATCCTCACTTTTCTTATAAACCCTTTTCTTTGATCTTCTTTTGTGTCAAGT
256 TTTTCAACCTCACTTTTGATATAAACTATTTTCTTTGAT-TTCTTTTGTTTCAAGT
60904 TTAAGTTCTT
Statistics
Matches: 589, Mismatches: 91, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
377 94 0.16
378 33 0.06
379 284 0.48
380 22 0.04
381 4 0.01
382 77 0.13
383 3 0.01
384 71 0.12
385 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (372 bp):
TTTCCTACCATATTTTTTGTTGTTTCCATTGTAATTATAACTCTAATCTTTCAACGAAAACTTCG
CTTAAATATCTCCAAAAACATGTGTTTCTCATTTATTTTTAAATTATTTATCACTTATTTTGCAT
TGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGTAAAAAAGGGGGGAAAAAAAACA
TAAAATGAGTTTGGGGGTGCTTATACAATCATGTCTATTTCCTTAAAGGCTTCACTCCTATTTTC
AACCTCACTTTTGATATAAACTATTTTCTTTGATTTCTTTTGTTTCAAGTATTTTGTGTCGAGTC
TGAAAATGCAGAATATCAAATTGGTTAGAGGCCAACCAATACAATGC
Found at i:62318 original size:379 final size:378
Alignment explanation
Indices: 61600--62581 Score: 1082
Period size: 379 Copynumber: 2.6 Consensus size: 378
61590 ATGATACATA
* * * * * * *** *
61600 TTTCCTACCATATTTGTTTATTGTTTCCATTGTAATTA-AGACTCTAATCTTTCTTTGAAAATTT
1 TTTCCTACCATATTTATATGTTCTTTCCATTGTAATTATA-AATCTAATCTTCCAAAGAAAACTT
** * * * * *
61664 CGCTTAAATATCTTCAAAAACAGTAGTTTTTTTCTTTTATCATT-T-AACATTATATACCACTTA
65 CGCTTAAATATCACCAAAAACA-T-GTGTTTCTCATTTAT--TTGTAAACATTATTTATCACTTA
** * * ** *
61727 TTTTGTGTTGTCAACTTTCACTACAATTCAAGTTTCCTATACGAGTCGAGTGAAAAAAGGGGTTG
126 TTTTGCATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGTGAAAAAAGGGG--G
* * * * *
61792 AAAAAAAAACATAAAATGGGTTTTGGGGATGTTTATACAATCATTCTATTTCTCTTAAAGGCTTC
189 GAAAAAAAACATAAAATGAG-TTTGGGGGTGCTTATACAATCATTCTATTTCTCTAAAAGGCTTC
* * *
61857 GCTCTCTGTTTTCAACCTCACATTGGATATATACTATTTTCTTTAATTCTCTTTTGTTTCAAGCA
253 GCTCCCTATTTTCAACCTCACATTGGATATAAACTATTTTCTTTAATTCTCTTTTGTTTCAAGCA
* * * *
61922 TTTTGTGTCGAGTCTGAAAATGCAGAGTATCAAATTGGTTAGTGGCCAACCAAGATACTTGC
318 TTTTGTGTCGAGTCTGAAAATGCAGAATATCAAATTGGTTAGAGGCCAACCAAGACAATT-C
* * *
61984 -TTCCTAGCATATTTATATGTTGTTTCCGTTGTAATTATAAATCTAATCTTCCAAAGAAAACTTC
1 TTTCCTACCATATTTATATGTTCTTTCCATTGTAATTATAAATCTAATCTTCCAAAGAAAACTTC
* * * *
62048 GCTTAAATATCACCAAAAATATGTGTTTCTCATTTATTTTTGAAA-TTTATTTATCACTTGTTTT
66 GCTTAAATATCACCAAAAACATGTGTTTCTCATTTATTTGT-AAACATTATTTATCACTTATTTT
* * *
62112 GCATTGTCAAATTTCACCACAATTCAATTTTTAGATACGCGTCGAGTGAAAAAAGGGGGGAAACA
130 GCATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGTGAAAAAAGGGGGGAAAAA
* *
62177 AAACATAAAAAGAGTTTGGGGGTGCTTATACAATCATGTCTATTTGTCTAAAAGGCTTCGCTCCC
195 AAACATAAAATGAGTTTGGGGGTGCTTATACAATCAT-TCTATTTCTCTAAAAGGCTTCGCTCCC
* * * * * *
62242 TATTTTCAACTTCACTTTTGATATAAACTGTTTTCTTTGATAT-TCTTTTGTTTCAAGTATTTTG
259 TATTTTCAACCTCACATTGGATATAAACTATTTTCTTTAAT-TCTCTTTTGTTTCAAGCATTTTG
* * * * *
62306 TGTC-ATGTCTGAAAATGTAGAATATCCAATTTGTTAGAGGCTAACCAATACAATTC
323 TGTCGA-GTCTGAAAATGCAGAATATCAAATTGGTTAGAGGCCAACCAAGACAATTC
* * * * * * * *
62362 TTTCGTACCATATTTATCTGTTCTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGTTC
1 TTTCCTACCATATTTATATGTTCTTTCCATTGTAATTATAAATCTAATCTTCCAAAGAAAACTTC
* * *
62427 GCTTAAATATCTCCAAAAGCATGTGTTTCTCCTTTATTTGTAAACATTATTTATCACTTATTTTG
66 GCTTAAATATCACCAAAAACATGTGTTTCTCATTTATTTGTAAACATTATTTATCACTTATTTTG
* ** * * * **
62492 CATTGTCAAATTTCACCACAATTAAAGTTTCAGATACGCACCGAATG-AAAAAGAGTGGAAATGA
131 CATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGTGAAAAAAGGGGGGAAAAAA
62556 AACATAAAATGAGTTT-GGGGTGCTTA
196 AACATAAAATGAGTTTGGGGGTGCTTA
62582 GACTTCTTTT
Statistics
Matches: 504, Mismatches: 85, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
377 10 0.02
378 54 0.11
379 289 0.57
380 2 0.00
381 76 0.15
382 3 0.01
383 69 0.14
384 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (378 bp):
TTTCCTACCATATTTATATGTTCTTTCCATTGTAATTATAAATCTAATCTTCCAAAGAAAACTTC
GCTTAAATATCACCAAAAACATGTGTTTCTCATTTATTTGTAAACATTATTTATCACTTATTTTG
CATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGCGTCGAGTGAAAAAAGGGGGGAAAAAA
AACATAAAATGAGTTTGGGGGTGCTTATACAATCATTCTATTTCTCTAAAAGGCTTCGCTCCCTA
TTTTCAACCTCACATTGGATATAAACTATTTTCTTTAATTCTCTTTTGTTTCAAGCATTTTGTGT
CGAGTCTGAAAATGCAGAATATCAAATTGGTTAGAGGCCAACCAAGACAATTC
Found at i:64072 original size:60 final size:60
Alignment explanation
Indices: 63979--64098 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
63969 GATATTCTTT
63979 TGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCTAA
1 TGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCTAA
64039 TGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCTAA
1 TGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCTAA
64099 CCAATACAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.37
Consensus pattern (60 bp):
TGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCTAA
Done.