Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012137.1 Kokia drynarioides strain JFW-HI SEQ_127136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13889
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Found at i:392 original size:216 final size:216
Alignment explanation
Indices: 1--7652 Score: 8044
Period size: 216 Copynumber: 35.5 Consensus size: 216
* * * * *
1 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
66 AAATAGGTCTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGAAAAACTATTTGGACCAAATG
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * * *
130 ATGCGGTTTC-CAGAGAATGGAATG-CTCGAAAAATTTC-CTGAAGGAATGTATTGTTTTGAATA
130 ATGCGATTTCTC-GAGCATGGAATGTTTAG-AAAATTGCTC-GAAGGAATGGATCGTCTTGAATA
192 CTTTAAGGAACCTAAGTTATAAAAG
192 CTTTAAGGAACCTAAGTTATAAAAG
* * * * *
217 AAGTCGTAAAAGTTTTACCAGTTCTGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACAA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
** * *
282 AAATAAGTTTTTAATTCAATTACAAAAAGTTGTTTATAAAATGACAAACTAATTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * *
347 TGCGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCAAAGGAATGGATCGACTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* **
412 AA-CAAGCCTAAGTTATTCAAG
196 AAGGAA-CCTAAGTTATAAAAG
* * ** ** * *
433 AACTCGTAAAACTTTGACAAGTTTGGAAT-TTCAACCAAGAGGCATGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACC
* * * * * ** *
497 TAAATAAATTTTTAATTGAAAGACAAAAAGTTGTTTTCAAAATGAGAAACTATTTAAAGCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* ** * * * *
562 ATGCGATTTC-CTAAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGGTCATCTTGAATACT
130 ATGCGATTTCTC-GAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* *
626 TTAAGGAACCGAACTTATAAAAG
194 TTAAGGAACCTAAGTTATAAAAG
* * * * * *
649 AACTCATAAGAGTTTGACAAGTTCGGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
714 AAATAAGTTTTTAATTCAAAGACAAAAA-ATGTTTTACAAAATG-CTAAACTATTTGTACCGAAT
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGAC-AAACTATTTGGACCAAAT
* * * * * * * * * * *
777 GATGCAATTTCCCAAGAAAGAAATGTTTTGAAAATTTCTCGAAGGAAAGCATCGTTTTGAATACT
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
842 TTAAGGAACCTATGTTTTATAAAAG
194 TTAAGGAACCTAAG--TTATAAAAG
* * * * * * *
867 AACTTGTAAAAGTTTTACCAGTTCGGATGTTTGTCCAAGAACCAAGAGACAAATAGTTCCCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* *
932 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* ** * *
997 TGCAATTTCTCGAGCATGGAA-CATTCGAAATATTGCTCAAAGGAATGGATCGTCTTGAATACTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* *
1061 TAAGGAACCGAAGTTACAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * * ** * * *
1083 ATCTCGTAAAAGTTTGAAAAGTTCAGATGACCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * ** **
1148 AAATTAGTTTTTTATTCAAAGA-AAAAAGGTAT-TTTACAAAACAACAAACTATTAAGACCAAAT
66 AAATAAGTTTTTAATTCAAAGACAAAAA-GT-TGTTTACAAAATGACAAACTATTTGGACCAAAT
*** * * * * * * * *
1211 GATTTAATTTCCCGAGAATGGAAT-ATTCGAAATATTTCTCGAAGGAATGCATCGTTTTGATTAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATAC
1275 TTTAAGGAACCTAAGTTATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* * * * * *
1299 AAGTCCTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACTAAGAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
** * * *
1364 AAATAACATTTTAATTCAAAGAC-AAAAGTTATTTACAAAATGACAAACTAATTGGACCAAATAA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* *
1428 TGCGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
**
1493 AAGGAACCTAAGTTATTCAAG
196 AAGGAACCTAAGTTATAAAAG
* * * * * * * * *
1514 AACTCGCAAAACTTTGACAATTTTGGAAT-TTCTTCCAA-AAACAATGAGGCAAACGATTCTTAC
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTCGTCCAAGAACCAA-GAGACAAACAATTCTCAC
** * * * ** *
1577 GTAAATAAGTTTTTAATTTAAAGATAAAAAGTTGTTTACAAAATGAGAAACTATTTAAAGCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * ** * * * *
1642 GATGTGATTTCCCAAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTTAATACT
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * *
1707 TTAAGGAACCGAACTTATAAAAT
194 TTAAGGAACCTAAGTTATAAAAG
* * * * * *
1730 AACTCGTAAATGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
1795 AAATAGGTTTTTAATTCAAAGACAACAA-CTGTTTTACAAAATGACAAACTATTTGGACCAAATG
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * ** * * * * * *
1859 ATGCGGTTTCCCGAGAATGGAATGCTCGGAAAATTTCCCGAATGAATGTATTGTTTTGAATACTT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
1924 TAAGGAACCTAAGTTATAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * * ** * *
1946 AAGTCGTAAAAGTTTTACCAGTTCTTATGTTCGTCCAAGAACCAAGAGATAAACAATTCTCACAA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
2011 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTATAAAATGACAAACTAATTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * *
2076 TACGATTTCTCGAGCATGGAAAGTTTAGAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* **
2141 AA-CAAGCCTAAGTTATTCAAG
196 AAGGAA-CCTAAGTTATAAAAG
* * ** *
2162 AACTCGTAAAACTTTGACAAGTTTGGAAT-TTCAG-CCAAGAGGCATGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * * * ** *
2225 GTAAATAAATTTTTAATTGAAAGACAAAAAGTTGTTTTCAAAATGAGAAAGTATTTAAAGCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * ** * * *
2290 GATGCGATTTCCCAAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACT
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * *
2355 TTAAGGAATCGAACTTATAAAAT
194 TTAAGGAACCTAAGTTATAAAAG
* * * * * * *
2378 AACTCATAAAAGTTTTACAAGTTCGGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCTCCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
** * *
2443 AAATAAGTTTTTAATTCAAAGACAAAAAAATGTTTTACAAAATG-CTAAACTATTTGTACCGAAT
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGAC-AAACTATTTGGACCAAAT
* * * * * * * * * *
2507 GATGCAATTTCCCGAGAAAGAAATGTTTTGAAAATTTCTCGAAGGAAAGCATCGTTTTGAATACT
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
2572 TTAAGGAACCTAAGTTTTATAAAAT
194 TTAAGGAACCTAAG--TTATAAAAG
* * * * *
2597 AACTTGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAGTTCTCACAA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * *
2662 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGAACCAAATAA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* ** * *
2727 TGCAATTTCTCGAGCATGGAA-CATTCGAAATATTGCTCAAAGGAATGGATCGTCTTGAATACTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* *
2791 TAAGGAACCGAAGTTACAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * * ** * * *
2813 ATCTCGTAAAAGTTTGAAAAGTTCAGATGACCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * ** **
2878 AAATTAGTTTTTTATTCAAAGA-AAAAAGGTAT-TTTACAAAACAACAAACTATTAAGACCAAAT
66 AAATAAGTTTTTAATTCAAAGACAAAAA-GT-TGTTTACAAAATGACAAACTATTTGGACCAAAT
*** * * * * * *
2941 GATTTAATTTCTCGAGAATGGAAT-ATTCGAAAAATTTCTCGAAGGAATGCATCGTTTTGAATAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
3005 TTTAAGGAACCTAAGTTATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* * * * * * *
3029 AAGTCCTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACTAAGAGATAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
** * * * *
3094 AAATAACATTTTAATTCAAAGAC-AAAAGTTGTTTTCAAAATGAGAAACTAATTGGTCCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * *
3158 TGCAATTTCTCGAGCTTTGAAT-TTTCAGAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTT
131 TGCGATTTCTCGAGCATGGAATGTTT-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
3222 TAAGGAACCTAAGTTATAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * ** * * * **
3244 AACACGTAAAAGTTTTACCGGTTCGAATGTTCGTCCAAGAACTAAGAGAAAAACAATTCTTTCCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
3309 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAGTGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* ** * *
3374 TACGATTTCTCGAG-ACTGGAA-CATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT
131 TGCGATTTCTCGAGCA-TGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* **
3437 TTAAGGAACCTATGTTATTGAAG
194 TTAAGGAACCTAAGTTATAAAAG
* ** * * * *
3460 AACTCGTAAAACTTTGACAAGTTCAAAAGTTCAG-CCAAGGACCATGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCACC
* * *
3524 TAAATAAGTTTTTAATTCACAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * ** * * * *
3589 ACGCAATTTCTCGAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGAATCATCTTGAATACTT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* *
3654 TAAGGAACCGAACTTATAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * * * * * * *
3676 AACTCGTAAAAGTTTGAAAAGTTCGTAAGTTCGGCCATGGACTAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
3741 AAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGAAAAACTAATTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * *
3805 TACAATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
3870 AA-GAAGCTGAAGTTATAAAAG
196 AAGGAACCT-AAGTTATAAAAG
* * * *
3891 CACTCGTAAAACTTTGACATGTTCGGAAT-TTCAG-CCAAGAACCATGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * * ** *
3954 GTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATCTACTAAATGAGAAACTATTTAAATCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * * * * *
4019 GATGCGATTTCCCGAGCATGGAACG-CTCGAGAAATTTCTCAAAGGAATGGATCATCTTGAATA-
129 GATGCGATTTCTCGAGCATGGAATGTTTAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* *
4082 TATTAAGGAACCAAAGTTACAAAAG
193 T-TTAAGGAACCTAAGTTATAAAAG
* * * * * * *
4107 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGGACCCATAGACAAACAATTCTCACCT
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* *
4172 AAATAAGTTTTTAATTCATAA-ACAAAACG-TGTTTTACAAAATGACAAA-TATTTTGACCAAAT
66 AAATAAGTTTTTAATTCA-AAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAAT
** * * ** * * * *
4234 GACACGATTTCTCGAGAATGGAAAGTTCGGAAAATTTCTTGAAGGAATGCATCAT-TCTGAATAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCT-TGAATAC
4298 TTTAAGGAACCTAAGTTATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* * * * *
4322 AAGTCGTAAAAGTTTTACCAGTTTGGATGTTCG-CCGAATAACCAAGAGACAAACAATTCTCACC
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCC-AAGAACCAAGAGACAAACAATTCTCACC
* * * * *
4386 TAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCTAAATC
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * * *
4451 ATGCGATTTCTCGAGCTTTGAAT-TTTCAAAAAATTGCTCGAAGGAATAGATCATCTTGAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTT-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
4515 TTAA-GAGACCTAAGTTATAAAAA
194 TTAAGGA-ACCTAAGTTATAAAAG
* * * * *** * **
4538 AACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACAAATTTACAAAAAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * * *
4603 AAGTAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAATGAGAAACAATTTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * ** * * *
4668 TGCGATATAC-CAAGCATGGAATGTACAGGAAATTGCTCGAAGGAATCGATCATCTTGAATACTT
131 TGCGAT-TTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* **
4732 TAAGGAACCGACCTTATAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * * * *
4754 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
*
4819 AAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTGTTTGGACCAAATG
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * * *
4883 ATGCGATTTCCCGAG-ACTGGAATG-TTCGAAAAATTTCCCGAAGGAAAGCATTGTTTTGAATAC
130 ATGCGATTTCTCGAGCA-TGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
4946 TTTAAGGAACCTAAGTTATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* * * *
4970 AAGTCGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACTAAGAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* *
5035 AAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * *
5099 TACGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCATGTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
5164 AAGGAACCGAAGTTATAAAAG
196 AAGGAACCTAAGTTATAAAAG
* * * * *
5185 AACTCGTAAAACTTTGACATGCTCGGAAT-TTCAG-CCAAGAACCATGAGACAAACAATTCTCAT
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * *
5248 GTAAATAAGTTTTTAATTTAAAGATAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * * * * *
5313 TATGCGATTTCCCGAGCATTGAATGTTCAGGAAATTCCTCGAAGGAATGGATCATC-TGTAATAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTG-AATAC
* **
5377 TTTAAGGAACCAAACATATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* ** * * *
5401 AACTC-CAAAATGTTTGACAAGTTTAGAAGTTCGGT-CAAGGACCAATAGACAAACAATTCTCAC
1 AACTCGTAAAA-GTTTGACAAGTTCGGATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
*
5464 CAAAATAAGTTTTTAATTAAAAGACAAAAAG-TGCTTTACAAAATGACAAACTATTTGGACCAAA
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAA
* * * * * ** * * * *
5528 TGATGAGGTTTCCCGAGAATGGAATGGTCGGAAAATTTCTCAAAGGAATGCATCGTTTTGAATAC
128 TGATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
5593 TTTAAGGAACCTAAGTTATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* * * ** * *
5617 AAGTCGTAAAATTTTTACCTGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTGACTA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * ** *
5682 AAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGAAAAACTAAATGGACCAAATGG
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * *
5746 TGC-AATTCTCAAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATAGTGTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* **
5810 AAGGAACCTATGTTATTCAAG
196 AAGGAACCTAAGTTATAAAAG
* * *
5831 AACTCGTAAAACTTTGACAAGTTTGGAAT-TTCAG-CCAAGAACCATGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * ** *
5894 GTAAATAAGTTTTTAATTTAAAGACAAAAAATTTTGTTTACAAAATGAGAAACTATTTAAAGCAA
64 CAAAATAAGTTTTTAATTCAAAGAC-AAAAA-GTTGTTTACAAAATGACAAACTATTTGGACCAA
* * * *
5959 ATGATGCGATTTCTCGAGCATGGAATGTTTGGGAAATTCCTCGAAGGAATGGATCATCTTGAATA
127 ATGATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * *
6024 CTTTATGGAACCGAACTTATAAAAG
192 CTTTAAGGAACCTAAGTTATAAAAG
* * * * * * *
6049 GACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGGCAAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
6114 AAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATG
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * *
6178 ATGCGATTTCCCGAGAATGGAATGTTCAGAAAATTTCTAC-AAGGAATGCATCATTTTGAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACT
6242 TTAAGGAACCTAAGTTATAAAAG
194 TTAAGGAACCTAAGTTATAAAAG
* * * *
6265 AACTCGTAAAAGTTTTACCAGTTCGGATGTTCTTCAAAGAACCAAGAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * *
6330 AAATAATTTTTTTAATTCAAATACAAAAAGTTGTTTCCAAAATGACAAACTAATTGGACCAAATG
66 AAATAA-GTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * *
6395 ATGCGATTTCTCGAGCGTGGAAT-TTTCGGAAAATTGCT------AATGGATCATCTTGAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTT-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
**
6453 TTAAGGAACCTAAGTTATTCAAG
194 TTAAGGAACCTAAGTTATAAAAG
* ** * * *
6476 AACTCTTAAAACATTGACAAGTTCGAAAT-TTCAG-CCAAGAACCATGAGACAAACAATTCTCAT
1 AACTCGTAAAAGTTTGACAAGTTCG-GATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * * *
6539 GTAAATAAGTTTTAAATTCAAAGACAAAAAGTTATTTACTAAATGAGAAACTATTTAGACCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * * *
6604 GATGCGATTTCCCGAGCATGGAATG-CTCGAGAAATTTCTCAAAGGAATGGATCGTCTTGAATAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * *
6668 ATTAAGGAACCAAAGTTAAAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* ** * * * *
6692 AACTCATAAAAGTTTGACAAGTTCAAAAT-TTCGACCAAGGACTAATAGACAAACAATTCTCACC
1 AACTCGTAAAAGTTTGACAAGTTC-GGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACC
* * *
6756 AAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAATATGACAAACTAATTGGACCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * *
6820 ATACGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
*
6885 TAAGGAACCGAAGTTATAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* *
6907 AACTCGTAAAACTTTGACAAGTTCGGAAT-TTCAG-CCAAGAACCATGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTCGG-ATGTTC-GTCCAAGAACCAAGAGACAAACAATTCTCAC
** * * ** * *
6970 GTAAATAAGTTTTTAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAAGCATAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * ** * * * * *
7035 GATACGATTTCCCGAGCATGGAATGGTCGGGAAATTCCTC-AATGTAAGGGATCATCTTGAATAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAA-GGAATGGATCGTCTTGAATAC
*
7099 TTTAAGGAACCGAAGTTATAAAAG
193 TTTAAGGAACCTAAGTTATAAAAG
* * * * *
7123 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTGGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
7188 AAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATG
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * *
7252 ATACGATTTCCCGAGAATGGAATGTTTAGAAAATTTCTCGAAGG-ATGCATCGTTTTGAATACTT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
7316 TAAGGAACCTAAGTTATAAAAG
195 TAAGGAACCTAAGTTATAAAAG
* * *
7338 -A-----AAAA--TTGTACCAGTTCGAATGTTAGTCCAAGAACCAAGAGACAAACAATT-TCACC
1 AACTCGTAAAAGTTTG-ACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACC
* * * * * * *
7394 TAAATAAGTTTTTAATTCAAAGACGAATAGTTGTTCACAAAATCACAAACTAATTGGTCCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * **
7459 ATGCGATTTCTCGAGCTTTGAAT-TTTCGAAAAGTTGCTCGAAGGAATATATCGTCTTGAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACT
*
7523 ATAAGGAACCTAAGTTATAAAAG
194 TTAAGGAACCTAAGTTATAAAAG
* * * ** * * **
7546 AACTCGTAAAAGTTTGACAAGGTCGAAAGTTCGTCCAAGAACCAATTGATAAAAAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * *
7611 GAATAAGTTTTTAACTCAAAGACCAAAAGTTTTTTACAAAAT
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
7653 TCTCACGTAA
Statistics
Matches: 6147, Mismatches: 1141, Indels: 296
0.81 0.15 0.04
Matches are distributed among these distances:
206 8 0.00
207 91 0.01
208 75 0.01
209 7 0.00
210 78 0.01
211 94 0.02
212 2 0.00
214 156 0.03
215 1201 0.20
216 3669 0.60
217 271 0.04
218 398 0.06
219 97 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AACTCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCA
AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
AAGGAACCTAAGTTATAAAAG
Found at i:1590 original size:431 final size:429
Alignment explanation
Indices: 1--12930 Score: 10560
Period size: 431 Copynumber: 29.9 Consensus size: 429
* * * * *
1 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
66 AAATAGGTCTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGAAAAACTATTTGGACCAAATG
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * * *
130 ATGCGGTTTCCAGAGAATGGAATG-CTCGAAAAATTTC-CTGAAGGAATGTATTGTTTTGAATAC
129 ATGCGATTTCCCGAGCATGGAATGTTTCG-AAAATTGCTC-GAAGGAATGGATCGTCTTGAATAC
* * * * *
193 TTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTTACCAGTTCTG-ATGTTCGTCCAAGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGG
* * ** *
257 ACCAAGAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAATTACAAAAAGTTGTTTATAAA
256 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * *
322 ATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCAA
321 ATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
* ** * **
387 AGGAATGGATCGACTTGAATACTTTAA-CAAGCCTAAGTTATTCAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAA-CCTAAGTTATAAAAG
* * * * ** * *
433 AACTCGTAAAACTTTGACAAGTTTGGAAT-TTCAACCAAGAGGCATGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACCAGTTCGG-ATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACC
* * * * * ** *
497 TAAATAAATTTTTAATTGAAAGACAAAAAGTTGTTTTCAAAATGAGAAACTATTTAAAGCAAATG
64 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
** * * * *
562 ATGCGATTTCCTAAGCATGGAATG-TTCGGGAAATTCCTCGAAGGAATGGGTCATCTTGAATACT
129 ATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * * * *
626 TTAAGGAACCGAACTTATAAAAGAACTCATAAGAGTTTGACAAGTTCGGAAGTTCGACCAAGGAC
193 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGAC
*
691 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAA-ATGTTTTACAAAA
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAA
* * * * * * * * * * *
755 TG-CTAAACTATTTGTACCGAATGATGCAATTTCCCAAGAAAGAAATGTTTTGAAAATTTCTCGA
322 TGAC-AAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
* *
819 AGGAAAGCATCGTTTTGAATACTTTAAGGAACCTATGTTTTATAAAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAG--TTATAAAAG
* * * * * *
867 AACTTGTAAAAGTTTTACCAGTTCGGATGTTTGTCCAAGAACCAAGAGACAAATAGTTCCCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACCA
* *
932 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * ** *
997 TGCAATTTCTCGAGCATGGAA-CATTCGAAATATTGCTCAAAGGAATGGATCGTCTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTCGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * * ** *
1061 TAAGGAACCGAAGTTACAAAAGATCTCGTAAAAGTTTGAAAAGTTCAG-ATGACCGGCCAAGGAC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGGAC
* *
1125 CAATAGACAAACAATTCTCACCAAAATTAGTTTTTTATTCAAAGA-AAAAAGGTAT-TTTACAAA
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAA-GT-TGTTTACAAA
** * *** * * * *
1188 ACAACAAACTATTAAGACCAAATGATTTAATTTCCCGAGAATGGAATATTCGAAATATTTCTCGA
321 ATGACAAACTATT-GGACCAAATGATACGATTTCTCGAGCATGGAATTTTCGAAA-ATTGCTCGA
*
1253 AGGAATGCATCGTTTTGATTACTTTAAGGAACCTAAGTTATAAAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * *
1299 AAGTCCTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACTAAGAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACCA
** * * *
1364 AAATAACATTTTAATTCAAAGAC-AAAAGTTATTTACAAAATGACAAACTAATTGGACCAAATAA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * *
1428 TGCGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTT
130 TGCGATTTCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
** * * * * * * *
1493 AAGGAACCTAAGTTATTCAAGAACTCGCAAAACTTTGACAATTTTGGAATTTCTTCCAA-AAACA
195 AAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGACCA
* * * ** * *
1557 ATGAGGCAAACGATTCTTACGTAAATAAGTTTTTAATTTAAAGATAAAAAGTTGTTTACAAAATG
260 AT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATG
* ** * ** * * * * *
1622 AGAAACTATTTAAAGCAAATGATGTGATTTCCCAAGCATGGAATGTTCGGGAAATTCCTCGAAGG
324 ACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTC-GAAAATTGCTCGAAGG
* * * * *
1687 AATGGATCATCTTT-AATACTTTAAGGAACCGAACTTATAAAAT
387 AATGCATCGT-TTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * *
1730 AACTCGTAAATGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
1795 AAATAGGTTTTTAATTCAAAGACAACAA-CTGTTTTACAAAATGACAAACTATTTGGACCAAATG
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * * * *
1859 ATGCGGTTTCCCGAGAATGGAATG-CTCGGAAAATTTCCCGAATGAATGTATTGTTTTGAATACT
129 ATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * ** *
1923 TTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTTACCAGTTC-TTATGTTCGTCCAAGAA
193 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGGA
* * * * *
1987 CCAAGAGATAAACAATTCTCACAAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTATAAAA
257 CCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* *
2052 TGACAAACTAATTGGACCAAATGATACGATTTCTCGAGCATGGAAAGTTTAGAAAATTGCTCGAA
322 TGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGG-AATTTTCGAAAATTGCTCGAA
* ** * **
2117 GGAATGGATCGACTTGAATACTTTAA-CAAGCCTAAGTTATTCAAG
385 GGAATGCATCGTTTTGAATACTTTAAGGAA-CCTAAGTTATAAAAG
* * * ** * *
2162 AACTCGTAAAACTTTGACAAGTTTGGAAT-TTCAGCCAAGAGGCATGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACCAGTTCGG-ATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACC
* * * * * * ** *
2226 TAAATAAATTTTTAATTGAAAGACAAAAAGTTGTTTTCAAAATGAGAAAGTATTTAAAGCAAATG
64 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * *
2291 ATGCGATTTCCCAAGCATGGAATG-TTCGGGAAATTCCTCGAAGGAATGGATCATCTTGAATACT
129 ATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * * * * * *
2355 TTAAGGAATCGAACTTATAAAATAACTCATAAAAGTTTTACAAGTTCGGAAGTTCGACCAAGGAC
193 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGAC
* **
2420 CAATAGACAAACAATTCTCTCCAAAATAAGTTTTTAATTCAAAGACAAAAAAATGTTTTACAAAA
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAA
* * * * * * * * * *
2485 TG-CTAAACTATTTGTACCGAATGATGCAATTTCCCGAGAAAGAAATGTTTTGAAAATTTCTCGA
322 TGAC-AAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
* *
2549 AGGAAAGCATCGTTTTGAATACTTTAAGGAACCTAAGTTTTATAAAAT
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAG--TTATAAAAG
* * * *
2597 AACTTGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAGTTCTCACAA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACCA
* * * *
2662 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGAACCAAATAA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * ** *
2727 TGCAATTTCTCGAGCATGGAA-CATTCGAAATATTGCTCAAAGGAATGGATCGTCTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTCGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * * ** *
2791 TAAGGAACCGAAGTTACAAAAGATCTCGTAAAAGTTTGAAAAGTTCAG-ATGACCGGCCAAGGAC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGGAC
* *
2855 CAATAGACAAACAATTCTCACCAAAATTAGTTTTTTATTCAAAGA-AAAAAGGTAT-TTTACAAA
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAA-GT-TGTTTACAAA
** * *** * * *
2918 ACAACAAACTATTAAGACCAAATGATTTAATTTCTCGAGAATGGAATATTCGAAAAATTTCTCGA
321 ATGACAAACTATT-GGACCAAATGATACGATTTCTCGAGCATGGAATTTTCG-AAAATTGCTCGA
2983 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * *
3029 AAGTCCTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACTAAGAGATAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACCA
** * * * *
3094 AAATAACATTTTAATTCAAAGAC-AAAAGTTGTTTTCAAAATGAGAAACTAATTGGTCCAAATGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * * *
3158 TGCAATTTCTCGAGCTTTGAAT-TTTCAGAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * ** *
3222 TAAGGAACCTAAGTTATAAAAGAACACGTAAAAGTTTTACCGGTTC-GAATGTTCGTCCAAGAAC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGGAC
* * * ** *
3286 TAAGAGAAAAACAATTCTTTCCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAAT
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* ** *
3351 GACAAACTAATTGGACCAAGTGATACGATTTCTCGAG-ACTGGAACATTCGAAAAATTGCTCAAA
323 GACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCA-TGGAATTTTCG-AAAATTGCTCGAA
* * * **
3415 GGAATGGATCGTCTTGAATACTTTAAGGAACCTATGTTATTGAAG
385 GGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * ** * * * **
3460 AACTCGTAAAACTTTGACAAGTTCAAAAGTTCAGCCAAGGACCATGAGACAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
* *
3525 AAATAAGTTTTTAATTCACAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * * * *
3590 CGCAATTTCTCGAGCATGGAATG-TTCGGGAAATTCCTCGAAGGAATGAATCATCTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * * * * *
3654 TAAGGAACCGAACTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTAAGTTCGGCCATGGACT
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGACC
*
3719 AATAGACAAACAATTCTCACCAAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATG
259 AATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATG
* * * *
3783 AAAAACTAATTGGACCAAATGATACAATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGG
324 ACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGAAGG
* * *
3848 AATGGATCGTGTTGAATACTTTAA-GAAGCTGAAGTTATAAAAG
387 AATGCATCGTTTTGAATACTTTAAGGAACCT-AAGTTATAAAAG
* * *
3891 CACTCGTAAAACTTTGA-CATGTTCGGAAT-TTCAGCCAAGAACCATGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACCA-GTTCGG-ATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * * ** *
3954 GTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATCTACTAAATGAGAAACTATTTAAATCAAAT
63 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * * *
4019 GATGCGATTTCCCGAGCATGGAACG-CTCGAGAAATTTCTCAAAGGAATGGATCATCTTGAATA-
128 GATGCGATTTCCCGAGCATGGAATGTTTCGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
4082 TATTAAGGAACCAAAGTTACAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
192 T-TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGG
* * *
4147 ACCCATAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCATAA-ACAAAACG-TGTTTTACA
256 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA-AAGACAAAAAGTTG-TTTACA
* * * ** * *
4210 AAATGACAAA-TATTTTGACCAAATGACACGATTTCTCGAGAATGGAAAGTTCGGAAAATTTCTT
319 AAATGACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTC-GAAAATTGCTC
* *
4274 GAAGGAATGCATCATTCTGAATACTTTAAGGAACCTAAGTTATAAAAG
382 GAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * *
4322 AAGTCGTAAAAGTTTTACCAGTTTGGATGTTCGCCGAATAACCAAGAGACAAACAATTCTCACCT
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCGCC-AAGAACCAAGAGACAAACAATTCTCACCA
* * * *
4387 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCTAAATCA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * * *
4452 TGCGATTTCTCGAGCTTTGAAT-TTTCAAAAAATTGCTCGAAGGAATAGATCATCTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * *
4516 TAA-GAGACCTAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAAC
194 TAAGGA-ACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGAC
* ** * ** * * *
4580 AAATTTACAAAAAATTCTCACGTAAGTAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAAT
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * * * * * * *
4645 GAGAAACAATTTGGACCAAATGATGCGATATAC-CAAGCATGGAATGTACAGGAAATTGCTCGAA
323 GACAAACTA-TTGGACCAAATGATACGAT-TTCTCGAGCATGGAATTTTC-GAAAATTGCTCGAA
* * * **
4709 GGAAT-CGATCATCTTGAATACTTTAAGGAACCGACCTTATAAAAG
385 GGAATGC-ATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * *
4754 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
*
4819 AAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTGTTTGGACCAAATG
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * *
4883 ATGCGATTTCCCGAG-ACTGGAATG-TTCGAAAAATTTCCCGAAGGAAAGCATTGTTTTGAATAC
129 ATGCGATTTCCCGAGCA-TGGAATGTTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * *
4946 TTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTTACCAGTTCGG-ATGTTCGTCCAAGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGG
* * *
5010 ACTAAGAGACAAACAATTCTCACCAAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAA
256 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* *
5074 ATGACAAACTAATTGGACCAAATGATACGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGA
321 ATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
* * * *
5139 AGGAATGGATCATGTTGAATACTTTAAGGAACCGAAGTTATAAAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * *
5185 AACTCGTAAAACTTTGA-CATGCTCGGAAT-TTCAGCCAAGAACCATGAGACAAACAATTCTCAT
1 AACTCGTAAAAGTTTGACCA-GTTCGG-ATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCAC
** * * * *
5248 GTAAATAAGTTTTTAATTTAAAGATAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAAT
63 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * * *
5313 TATGCGATTTCCCGAGCATTGAATG-TTCAGGAAATTCCTCGAAGGAATGGATCATC-TGTAATA
128 GATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTG-AATA
* ** * ** *
5376 CTTTAAGGAACCAAACATATAAAAGAACTC-CAAAATGTTTGACAAGTTTAGAAGTTCGGT-CAA
191 CTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA-GTTTGACAAGTTCGGAATTTC-GTCCAA
*
5439 GGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTAAAAGACAAAAAG-TGCTTTAC
254 GGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTAC
* * * ** *
5503 AAAATGACAAACTATTTGGACCAAATGATGA-GGTTTCCCGAGAATGGAATGGTCGGAAAATTTC
318 AAAATGACAAACTA-TTGGACCAAATGAT-ACGATTTCTCGAGCATGGAATTTTC-GAAAATTGC
*
5567 TCAAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
380 TCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * *
5617 AAGTCGTAAAATTTTTACCTGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTGACTA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACCA
* * ** *
5682 AAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGAAAAACTAAATGGACCAAATGG
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * * * *
5746 TGC-AATTCTCAAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATAGTGTTGAATACTTT
130 TGCGATTTCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* ** * * *
5810 AAGGAACCTATGTTATTCAAGAACTCGTAAAACTTTGACAAGTTTGGAATTTCAG-CCAAGAACC
195 AAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTC-GTCCAAGGACC
** * *
5874 -ATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAATTTTGTTTACAAA
259 AAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAA-GTTGTTTACAAA
* ** * * * * *
5938 ATGAGAAACTATTTAAAGCAAATGATGCGATTTCTCGAGCATGGAATGTTTGGGAAATTCCTCGA
321 ATGACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
* * * * * *
6003 AGGAATGGATCATCTTGAATACTTTATGGAACCGAACTTATAAAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * * *
6049 GACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGGCAAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
6114 AAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATG
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * *
6178 ATGCGATTTCCCGAGAATGGAATG-TTCAGAAAATTTCTAC-AAGGAATGCATCATTTTGAATAC
129 ATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCT-CGAAGGAATGGATCGTCTTGAATAC
* * * * *
6241 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGG-ATGTTCTTCAAAGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGG
* * * *
6305 ACCAAGAGACAAACAATTCTCACCAAAATAATTTTTTTAATTCAAATACAAAAAGTTGTTTCCAA
256 ACCAATAGACAAACAATTCTCACCAAAATAA-GTTTTTAATTCAAAGACAAAAAGTTGTTTACAA
* *
6370 AATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCGTGGAATTTTCGGAAAATTGCT--
320 AATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTC-GAAAATTGCTCG
**
6433 AATGG-AT-CATC---TTGAATACTTTAAGGAACCTAAGTTATTCAAG
383 AA-GGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* ** * * * **
6476 AACTCTTAAAACATTGACAAGTTCGAAAT-TTCAGCCAAGAACCATGAGACAAACAATTCTCATG
1 AACTCGTAAAAGTTTGACCAGTTCG-GATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACC
* * * * * *
6540 TAAATAAGTTTTAAATTCAAAGACAAAAAGTTATTTACTAAATGAGAAACTATTTAGACCAAATG
64 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * *
6605 ATGCGATTTCCCGAGCATGGAATG-CTCGAGAAATTTCTCAAAGGAATGGATCGTCTTGAATACA
129 ATGCGATTTCCCGAGCATGGAATGTTTCGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * ** *
6669 TTAAGGAACCAAAGTTAAAAAAGAACTCATAAAAGTTTGACAAGTTCAAAATTTCGACCAAGGAC
193 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGAC
* * *
6734 TAATAGACAAACAATTCTCACCAAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAATAT
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* *
6798 GACAAACTAATTGGACCAAATGATACGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAG
323 GACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGAAG
* * *
6863 GAATGGATCGTGTTGAATACTTTAAGGAACCGAAGTTATAAAAG
386 GAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * *
6907 AACTCGTAAAACTTTGACAAGTTCGGAAT-TTCAGCCAAGAACCATGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACCAGTTCGG-ATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACC
* * * ** * *
6971 TAAATAAGTTTTTAATTTAAAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAAGCATATG
64 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * *
7036 ATACGATTTCCCGAGCATGGAATG-GTCGGGAAATTCCTC-AATGTAAGGGATCATCTTGAATAC
129 ATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAA-GGAATGGATCGTCTTGAATAC
* * * *
7099 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTGGGCCAAGGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGA
7164 CCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAA
257 CCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAA
* * * *
7228 ATGACAAACTATTTGGACCAAATGATACGATTTCCCGAGAATGGAATGTTTAGAAAATTTCTCGA
321 ATGACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
7293 AGG-ATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* *
7338 -A-----AAAA--TTGTACCAGTTCGAATGTTAGTCCAAGAACCAAGAGACAAACAATT-TCACC
1 AACTCGTAAAAGTTTG-ACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACC
* * * * * * *
7394 TAAATAAGTTTTTAATTCAAAGACGAATAGTTGTTCACAAAATCACAAACTAATTGGTCCAAATG
64 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * **
7459 ATGCGATTTCTCGAGCTTTGAAT-TTTCGAAAAGTTGCTCGAAGGAATATATCGTCTTGAATACT
129 ATGCGATTTCCCGAGCATGGAATGTTTCGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * * *
7523 ATAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCGAAAGTTCGTCCAAGAAC
193 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGAC
* * * *** * *
7588 CAATTGATAAAAAATTCTCACGTGAATAAGTTTTTAACTCAAAGACCAAAAGTT-TTT------T
258 CAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * *
7646 -ACAAA--ATT---CTC--ACG-TA--A------AAGCATGGAATGTTCGGAAAATTGCTCGAAG
323 GACAAACTATTGGAC-CAAATGATACGATTTCTCGAGCATGGAATTTTC-GAAAATTGCTCGAAG
** * *
7694 GAATGGTTCATCTTT-AATACTCTAAGGAACCTAAGTTATAAAAG
386 GAATGCATCGT-TTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * * *
7738 AACTTGTAAAAGTTTGACAACTTCAGATGTTCGGCCAAGGACCAATAGACAAACAATTGTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
* * *
7803 AAATAAGTTTTTAATTCAAAGAC-AAAATTTGTTTTACAAAATGATAAACTATTTGGACCAAAAG
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * * * * * *
7867 ATGCGATTTCCCGAGAATGGAATG-TTCAAAAAATTTCCCTAAGGAACGCATTGTTTTGAATATT
129 ATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * ** * *
7931 TTAAGAAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACTGGTACGG-ATGTTCGTCCAAGAA
193 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGGA
* * *
7995 CC-ATGAGACAAACAATTCACACAAAAATAAGTTTTTAATTCAAACACAAAAAGTTGTTTACAAA
257 CCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * *
8059 ATGACAAACTAATTGGACCAAATGATGCGATTTATCGAGTATGGAATATTCGAAAAATTGCTCGA
321 ATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTCG-AAAATTGCTCGA
* * * *
8124 AGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTAGT-CAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTA-TAAAAG
* * * ** *
8170 AACTCGTAAAACTTTGA-CACGTTCGGAAGTTTAGCCAATG-ACCGTGAGACAAACAATTCTCAA
1 AACTCGTAAAAGTTTGACCA-GTTCGGATG-TTCGCCAA-GAACCAAGAGACAAACAATTCTCAC
** * *
8233 GTAAATAAGTCTCTAATTCAAAGACAAAAAGTTGTTTACAAAACGAGAAACTATTTAGACCAAAT
63 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTT-----AC---AAA--A--T-GA-C----
* * * * *
8298 GATGAGAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTGAAT-TTTCGAAAAATTGCTC
110 ------AAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTCG-AAAATTGCTC
**
8362 GAAGGAATAAATCGTCTTGAATACTTTAAGGAACCTAAGTTAT-AAAGAACTCGTAAAAGTTTGA
168 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * ** *
8426 CAAGTTCGGAAGTTCGTCCAAGAACCAATTGACAAAAAATTCTCACGTAAATAAGTTTTTAACTC
233 CAAGTTCGGAATTTCGTCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
* * * **
8491 AAAAACCAAAAGTT-TTT------T-ACAAA--ATT---CTC--ACG-TA--A-----AAAGCAT
298 AAAGACAAAAAGTTGTTTACAAAATGACAAACTATTGGAC-CAAATGATACGATTTCTCGAGCAT
* * * *
8533 GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACC-AATGTTAT
362 GGAATTTTC-GAAAATTGCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAA-GTTAT
8597 AAAAG
425 AAAAG
* * * * * *
8602 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGGACCAATAGATAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTCG-CCAAGAACCAAGAGACAAACAATTCTCACCA
* *
8667 AAATAAGTTTTTAACTCAAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTTGACCAAAT
65 AAATAAGTTTTTAATTC-AAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAAT
* * * * * * * * * * *
8731 TATACGACTTCCTGAGGATGGAATG-TTCAGAAATTTTCTCTAAGGAATGCATCATTTTGAATAC
128 GATGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
8795 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTC-GTATATTCATCAAAGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGG
* * * *
8859 ACTAAGAGACAAACAATTCTCACCAAAATAAGATTTTAATTCGAAGAC-AAAAGTTGTTTACAAA
256 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * *
8923 ATGACAAACTAATTGGACCAAATAATGCGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGA
321 ATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAAT-TTTCGAAAATTGCTCGA
* * * **
8988 AGGAATGGATTGTGTTGAATACTTTAAGGAACCTAAGTTATTCAAG
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * * * * **
9034 AACTCGTAAAACTTTGTCTAGTTTGGAAGTTCGGCCAAGAATCATGAGGC--A-AA--CTCACGT
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * * *
9094 AAATAAGTTTTCAAGTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTGGGCCAATTGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * * * * *
9159 GGCGATTTCTCGGGCATGGAATG-TTCAAGAAATTCCTCGAAAGAGTGGATCGTCTTCAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTCGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * * * * *
9223 TAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTCGAGAAGTTCAGAAGTTCGGCCATGGACC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGACC
* ** * * *
9288 AATGGGGAAACAATTCTCACAAAAATAAGTTCTTAATTCAAAGAAAAAAATAAGTTCGAAAGTTC
259 AATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAG--ACAAA-AAGTT-----GTT-
* * ** * * * * ***
9353 GTCCAAGAACCAATTGACAAAATATTTTCACGTAAAT-A-A-G-TTT-T-TAAC-T-TAA-AGAC
315 -T---ACAA--AA-TGACAAACTA-TTGGAC-CAAATGATACGATTTCTCGAGCATGGAATTTTC
* * * * ** * ** * ** * *
9409 CAAAAGTTGTTTAC-AA--AATGAGAAACAATTTG--GAC-AAAATGATGC-AATTTACCAAGCA
371 GAAAA-TTG-CT-CGAAGGAAT--GCATCGTTTTGAATACTTTAAGGAACCTAAGTTA-TAA--A
*
9467 TGG
428 -AG
* * * ** *** * * * *
9470 AATGTTCG-AAAA-ATTG-CTCGAAGGAAT-GGATCATCTTGAA-TACTATA-AG-GAATCGAA-
1 AA--CTCGTAAAAGTTTGAC-C--A-G-TTCGGATGTTCGCCAAGAACCA-AGAGACAAAC-AAT
* * * * ** * * * ***
9527 -CTTA-CAAAAGAACTCGTAAAAGTTGGACAAGTTC-AGAAGTTCGGCCA-AGGACCAATAGACA
57 TCTCACCAAAATAAGT-TTTTAA-TT-CA-AAG-ACAAAAAGTT-GTTTACA--A--AAT-GACA
* * *** * ** * *** * *
9588 AACAATTCT-CACCAAAAT-ATGTTTTTAATTCAAAGAAAAAAAGTGTTTTAC-AAAA-TG-ACA
111 AACTATT-TGGACC-AAATGATGCGATT--TCCCGAGCATGGAA-TG-TTT-CGAAAATTGCTCG
** * **** * ** *** * *
9648 AACTATTTGGA-CCAAAT-AATGCGATTTCCCGGGAATGGAA-TGATAAAAAAATTTCTCG--AA
169 AAGGA-ATGGATCGTCTTGAATAC--TTT--AAGGAACCTAAGTTATAAAAGAA---CTCGTAAA
** * ** * ** * * *
9708 AGAATG-CATCGTTTTGAA-TAC-TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAATT-TTA
226 AGTTTGACA-AGTTCGGAATTTCGTCCAAGG-ACC-AA--TA-GACA-AA--C----AATTCTCA
** ** ** * * *
9769 CC-AGTTCGAATGTTCCTCCAAGAACCATGAGACAAACAA-TT-CTCACCAAAATAAGTTTTTAA
278 CCAAAAT--AA-GTT--T-TTA-ATTCA-AAGACAAA-AAGTTGTTTA-CAAAAT--G------A
* * * * * *
9831 TTCAAATACAAAAAGTTGTTTA-AAAATGACAAACTAATTGGTC-CAAATG-ATGCG-ATTTCTC
325 --C-AA-AC---TA-TTG--GACCAAATG--ATAC-GATT--TCTC-GA-GCATG-GAATTT-TC
* * * *** * * * **
9892 GAGCTTTGAATT-TTCGAA-AAATTGC-TCG-AAGGAATGGATCGTTT-TGAATACTTTAAGGAA
371 GA-----AAATTGCTCGAAGGAA-TGCATCGTTTTGAAT--A-C-TTTAAGGA-AC-CTAAGTTA
9952 CCTAAGTTATTCATG
424 --TAA---A---A-G
* * * * * * * **
9967 AACTTGTAAAACTTTGACAAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACCAGTTCGGATG-TTCGCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * *
10032 AAATAA-TATTTTAACTCAAAGACAAAAACTTGTTTACAAAATGATAAACTATTTGGACCAATTG
65 AAATAAGT-TTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * * * *
10096 AAGCGATTTCTCGAGCATGCAATG-TTCAACAAATTCCTCGAAAGAATGGATCGTCTTGAATACT
129 ATGCGATTTCCCGAGCATGGAATGTTTCGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * ** * *
10160 TTAAGGAA-TTGAAGTTATAAAAGAACACGTAAAAGTTTGAGAAGTTCAAAAGTTCGGCCAAGGA
193 TTAAGGAACCT-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGA
10224 CCAATAGACAAACAATTCTCACCAAAATATA-TTTTTAATTCAAAGACAAAAAG-TGTTTTACAA
257 CCAATAGACAAACAATTCTCACCAAAATA-AGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAA
* * ** * * *
10287 AATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAG-ACTGGAACAATACAAAAATTTCTC
320 AATGACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCA-TGGAA-TTTTCGAAAATTGCTC
* *
10351 GAAGGAATGGATCGTTTTCAATACTTTAAGGAACCTAAGTTATAAAAG
382 GAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * *
10399 AACTCGTAAAA-TTTTACCAGTTCGGATGTTCCTCCAAGAACCATGAGACAAACACTTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTT-CGCCAAGAACCAAGAGACAAACAATTCTCACCA
** * * *
10463 AAATAAGTTTTTAATTCAAATTCAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * *
10528 TGCGATTTCTCGAGCTTTGAAT-TTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
** * * * * * *
10592 TAAGGAACCTAAGTTATTCATGAACTTGTAAAACTTTGACAAGTTTGGAAGTTT-GGCCAAGAAC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA-TTTCGTCCAAGGAC
** * * *
10656 C-ATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTACAAAA
258 CAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * * * * * *
10720 TGATAAACTATTTGGACCAATTGA-AGCGATTTCCCGAGCATGCAATGTTCGACAAATTCCTTGA
322 TGACAAACTA-TTGGACCAAATGATA-CGATTTCTCGAGCATGGAATTTTCGA-AAATTGCTCGA
* * *
10784 AGGAATGGATCGTCTTGAATACTTTAAGGAA-TTGAAGTTATAAAA-
384 AGGAATGCATCGTTTTGAATACTTTAAGGAACCT-AAGTTATAAAAG
** ** * * *
10829 AACTCGTAAAAGTTTGAGAAGTTCAAAAT-TTCGGCCAAGGACCAATAGAAAAACAATTCTCACC
1 AACTCGTAAAAGTTTGACCAGTTC-GGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACC
* *
10893 AAAATAAGTTTTTAATTCAAAGGCAAAAAG-TGTTTTACAAAATGACAAACTATTTGGATCAAAT
64 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAAT
* * * * ** * * * *
10957 GATGCTATTTCCCGAGAATAGAATG-ATAAAAAATTTTCTCGAAGGAATGCATCGTTTTCAATAC
128 GATGCGATTTCCCGAGCATGGAATGTTTCGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
11021 TTTAAGGAACCTAAGTTATAAAAGAACTCTTAAAA-TTTTACCAGTTCGG-ATGTTCCTCCAAGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGG
* * *
11084 ACC-ATGAGACAAACAATTCTCACCAAAATAAATTTTTAATTCAAATACAAAAAGTTGTTTAAAA
256 ACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAA
* ** * *
11148 AATGACAAACTAATTGGTCCAAATGATGTGATTTCTCGAGCTTTGAATTTTCGAAAAATTGCTCG
320 AATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTCG-AAAATTGCTCG
* * * ** *
11213 AAGGAATGGATGGTTTTGAGTACTTTAAGGAACCTAAGTTATTCATG
383 AAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * * * **
11260 AACTTGTAAAACTTTGACAAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACCAGTTCGGATG-TTCGCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * ** *
11325 AAATAAGATTTTAACTCAAAGACAAAAACTTGTTTACAAAATGATTAACTATTTGGACCAATTGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * *
11390 AGCGATTTCTCGAGCATGCAATG-TTCGAAAAATTCCTCGAAGGAATGGATCGTCTTGAATACTA
130 TGCGATTTCCCGAGCATGGAATGTTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * ** * *
11454 TAAGGAA-TTGAAGTTATAAAAGAACTCGTAAAAGTTTGAGAAGTTCAAAAGTTCGGCCAAGGAC
194 TAAGGAACCT-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGAC
11518 CAATAGACAAACAATTCTCACCAAAATATA-TTTTTAATTCAAAGACAAAAAG-TGTTTTACAAA
258 CAATAGACAAACAATTCTCACCAAAATA-AGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAA
* * ** * * *
11581 ATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAG-ACTGGAACAATACAAAAATTTCTCG
321 ATGACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCA-TGGAA-TTTTCGAAAATTGCTCG
11645 AAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
383 AAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* * * * *
11692 AACTCGTAAAA-TTTTACCAGTTCGGATGTTCCTCCAAGAACCATGAGACAAACACTTCTTACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTT-CGCCAAGAACCAAGAGACAAACAATTCTCACCA
** * * *
11756 AAATAAGTTTTTAATTCAAATTCAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * * *
11821 TGCGATTTCTCGAGCTTTGAAT-TTTCAAAAAATTGCTCGAAGGAATGGATTGTTTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
** * * * * * *
11885 TAAGGAACCTAAGTTATTCATGAACTTGTAAAACTTTGACAAGTTTGGAAGTTT-GGCCAAGAAC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA-TTTCGTCCAAGGAC
** * *
11949 C-ATGAGACAAACAATTCTCACGTAAATAA-TATTTTAACTCAAAGACAAAAACTTGTTTACAAA
258 CAAT-AGACAAACAATTCTCACCAAAATAAGT-TTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * * * *
12012 ATGATAAACTATTTGGACCAATTGA-AGCGATTTCTCGAGCATGCAATGTTCAACAAATTCCTCG
321 ATGACAAACTA-TTGGACCAAATGATA-CGATTTCTCGAGCATGGAATTTTCGA-AAATTGCTCG
* * * *
12076 AAAGAATGGATCGTCTTGAATACTTTAAGGAA-TTGAAGTTATAAAAG
383 AAGGAATGCATCGTTTTGAATACTTTAAGGAACCT-AAGTTATAAAAG
* ** ** * * *
12123 AACACGTAAAAGTTTGAGAAGTTCAAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTGACCAGTTCGGATGTTC-GCCAAGAACCAAGAGACAAACAATTCTCACCA
12188 AAATATA-TTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAAT
65 AAATA-AGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAAT
*** * * * * *
12251 GATGCGATTTCCCGAG-ACTGGAACAATACAAAAATTTCTCGAAGGAATGGATCGTTTTCAATAC
128 GATGCGATTTCCCGAGCA-TGGAATGTTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * *
12315 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA-TTTTACCAGTTCGG-ATGTTCCTCCAAGA
192 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAT-TTCGTCCAAGG
* * *
12378 ACC-ATGAGACAAACACTTCTCACCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTAAAA
256 ACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAA
* * * *
12442 AATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTGAATTTTCGAAAAATTGCTCG
320 AATGACAAACT-ATTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTCG-AAAATTGCTCG
* * ** *
12507 AAGGAATGGATCGTTTTGAGTACTTTAAGGAACCTAAGTTATTCATG
383 AAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
** * * * * * * **
12554 AACTTTTAAAACTTTGACAAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACCAGTTCGGATG-TTCGCCAAGAACCAAGAGACAAACAATTCTCACCA
* * * * *
12619 AAATAAGATTTTAACTCAAAGACAAAAACTTGTTTACAAAATGATAAACTATTTGGACCAATTGA
65 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * *
12684 AGCGATTTCTCGAGCATGCAATG-TTCGACAAATTCCTCAAAGGAATGGATCGTCTTGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTTCGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
** * * ** * *
12748 TAAGGAATATAAATTATAAAAGAACTCGTAAAAGTTTGAGAAGTTCAAAAGTTCGGCCAAGGACC
194 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGACC
12813 AATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAAT
259 AATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAAT
* * * * *
12877 GACAAACTATTTGGACCAAATGATGCGGTTTCCCGAGAATGGAATGTTCGAAAA
323 GACAAACTA-TTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTCGAAAA
12931 AATTTTAATT
Statistics
Matches: 10034, Mismatches: 1904, Indels: 1121
0.77 0.15 0.09
Matches are distributed among these distances:
398 2 0.00
399 24 0.00
400 34 0.00
401 4 0.00
405 1 0.00
406 4 0.00
407 44 0.00
408 199 0.02
409 97 0.01
410 78 0.01
412 2 0.00
413 1 0.00
415 6 0.00
416 7 0.00
417 5 0.00
419 4 0.00
420 5 0.00
421 2 0.00
422 9 0.00
423 212 0.02
424 38 0.00
425 79 0.01
426 191 0.02
427 292 0.03
428 11 0.00
429 10 0.00
430 384 0.04
431 3513 0.35
432 2880 0.29
433 294 0.03
434 571 0.06
435 278 0.03
436 19 0.00
437 14 0.00
438 8 0.00
439 17 0.00
440 20 0.00
441 8 0.00
442 11 0.00
443 29 0.00
444 19 0.00
445 8 0.00
446 3 0.00
447 11 0.00
448 25 0.00
449 10 0.00
450 14 0.00
451 15 0.00
452 19 0.00
453 30 0.00
454 10 0.00
455 89 0.01
456 87 0.01
457 4 0.00
458 2 0.00
459 2 0.00
460 1 0.00
461 4 0.00
462 3 0.00
463 7 0.00
464 5 0.00
465 1 0.00
466 2 0.00
467 8 0.00
468 13 0.00
469 15 0.00
470 6 0.00
471 2 0.00
472 2 0.00
474 2 0.00
475 7 0.00
476 5 0.00
477 3 0.00
479 2 0.00
480 1 0.00
481 3 0.00
482 2 0.00
483 8 0.00
484 3 0.00
485 27 0.00
486 20 0.00
487 18 0.00
488 15 0.00
489 9 0.00
490 16 0.00
491 3 0.00
492 3 0.00
493 5 0.00
494 8 0.00
495 15 0.00
496 12 0.00
497 10 0.00
498 8 0.00
499 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (429 bp):
AACTCGTAAAAGTTTGACCAGTTCGGATGTTCGCCAAGAACCAAGAGACAAACAATTCTCACCAA
AATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAT
GCGATTTCCCGAGCATGGAATGTTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
AGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAATTTCGTCCAAGGACCAA
TAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGAC
AAACTATTGGACCAAATGATACGATTTCTCGAGCATGGAATTTTCGAAAATTGCTCGAAGGAATG
CATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
Found at i:1779 original size:647 final size:645
Alignment explanation
Indices: 1--12930 Score: 10759
Period size: 647 Copynumber: 19.9 Consensus size: 645
* * * * * * *
1 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACC-ATGAGACAAACAATTCTCACC
* * * *
65 AAAATAGGTCTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGAAAAACTATTTGGACCAAAT
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAAT
* * * * * * * *
129 GATGCGGTTTC-CAGAGAATGGAATG-CTCGAAAAATTTC-CTGAAGGAATGTATTGTTTTGAAT
129 GATGCGATTTCTC-GAGCATGGAATGTTTAG-AAAATTGCTC-GAAGGAATGGATCGTCTTGAAT
* * * *
191 ACTTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTTACCAGTTCT-G-ATGTTCGTCCA
191 ACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT-TGGAAT-TTCGGCCA
* **
254 AGAACCAA-GAGACAAACAATTCTCACAAAAATAAGTTTTTAATTCAATTACAAAAAGTTGTTTA
254 AG-ACCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTA
* * * * *
318 TAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGCGTGGAATGTT-TAGAAAATTG
318 CAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTC
* * * * ** *
382 CTCAAAGGAATGGATCGACTTGAATACTTTAA-CAAGCCTAAGTTATTCAAGAACTCGTAAAACT
382 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CCGAAGTTATAAAAGAACTCGTAAAAGT
* * ** * ** *
446 TTGACAAGTTTGGAATTTCAACCAA-GAGGC-ATGAGACAAACAATTCTCACGTAAATAAATTTT
446 TTGACAAGTTCGGAAGTTCGGCCAAGGA-CCAAT-AGACAAACAATTCTCACCAAAATAAGTTTT
* * * ** * *
509 TAATTGAAAGACAAAAAGTTGTTTTCAAAATGAGAAACTATTTAAAGCAAATGATGCGATTTCCT
509 TAATTCAAAGACAAAAAGTT-TTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCC
* * * * * * * * *
574 AAGCATGGAATGTTCGGGAAATTCCTCGAAGGAATGGGTCATCTTGAATACTTTAAGGAACCGAA
572 GAGAATGGAATTTTC-GAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAA
*
639 CTTATAAAAG
636 GTTATAAAAG
* * * * * * * *
649 AACTCATAAGAGTTTGACAAGTTCGGAAGTTCGACCAAGGACCAAT-AGACAAACAATTCTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACC-ATGAGACAAACAATTCTCACC
* * * *
713 AAAATAAGTTTTTAATTCAAAGACAAAAA-ATGTTTTACAAAATG-CTAAACTATTTGTACCGAA
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGAC-AAACTAATTGGACCAAA
* * * * * * * * * * *
776 TGATGCAATTTCCCAAGAAAGAAATGTTTTGAAAATTTCTCGAAGGAAAGCATCGTTTTGAATAC
128 TGATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * * *
841 TTTAAGGAACCTATGTTTTATAAAAGAACTTGTAAAAGTTTTACCAGTTCGG-ATGTTTGTCCAA
193 TTTAAGGAACCTAAG--TTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAT-TTCGGCCAA
* * * *
905 GAACCAA-GAGACAAATAGTTCCCACCAAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTAC
255 G-ACCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTAC
* * ** * *
969 AAAATGACAAACTAATTGGACCAAATGATGCAATTTCTCGAGCATGGAACATTCGAAATATTGCT
319 AAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCT
* * *
1034 CAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTACAAAAGATCTCGTAAAAGTTTG
384 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * ** * *
1099 AAAAGTTCAGATGACCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATTAGTTTTTTATT
449 ACAAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATT
** * ***
1164 CAAAGA-AAAAAGGTATTTTACAAAACAACAAACTATTAAGACCAAATGATTTAATTTCCCGAGA
514 CAAAGACAAAAA-GT-TTTTACAAAATGACAAACTATT-GGACCAAATGATGCGATTTCCCGAGA
* * * *
1228 ATGGAATATTCGAAATATTTCTCGAAGGAATGCATCGTTTTGATTACTTTAAGGAACCTAAGTTA
576 ATGGAATTTTCGAAA-ATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTA
1293 TAAAAG
640 TAAAAG
* * * *
1299 AAGTCCTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACTAAGAGACAAACAATTCTCACCA
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACCA
** * *
1364 AAATAACATTTTAATTCAAAGAC-AAAAGTTATTTACAAAATGACAAACTAATTGGACCAAATAA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
* *
1428 TGCGATTTCTCGAGCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
** * * * ** * *
1493 AAGGAACCTAAGTTATTCAAGAACTCGCAAAACTTTGACAATTTTGGAATTTCTTCCAAAAACAA
196 AAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAAGACCAA
* * * ** * *
1558 TGAGGCAAACGATTCTTACGTAAATAAGTTTTTAATTTAAAGATAAAAAGTTGTTTACAAAATGA
261 TGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGA
* ** * * * * **
1623 GAAACTATTTAAAGCAAATGATGTGATTTCCCAAGCATGGAATGTTCGGGAAATTCCTCGAAGGA
326 CAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGAAGGA
* * * * *
1688 ATGGATCATCTTTAATACTTTAAGGAACCGAACTTATAAAATAACTCGTAAATGTTTGACAAGTT
391 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* *
1753 CAGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAGGTTTTTAATTCAAAGAC
456 CGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC
* * * *
1818 AACAACTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGGTTTCCCGAGAATGGAATG
521 AAAAAGT-TTTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCCGAGAATGGAATT
* * * * * *
1883 CTCGGAAAATTTCCCGAATGAATGTATTGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
584 TTC-GAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
* ** * * * *
1946 AAGTCGTAAAAGTTTTACCAGTTCTTATGTTCGTCCAAGAACCAAGAGATAAACAATTCTCACAA
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACCA
* *
2011 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTATAAAATGACAAACTAATTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
* * *
2076 TACGATTTCTCGAGCATGGAAAGTTTAGAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* ** * * *
2141 AA-CAAGCCTAAGTTATTCAAGAACTCGTAAAACTTTGACAAGTTTGGAATTTCAGCCAAGAGGC
196 AAGGAA-CCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAAGA-CC
** * * *
2205 -ATGAGACAAACAATTCTCACGTAAATAAATTTTTAATTGAAAGACAAAAAGTTGTTTTCAAAAT
259 AATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAAT
* * ** * * * **
2269 GAGAAAGTATTTAAAGCAAATGATGCGATTTCCCAAGCATGGAATGTTCGGGAAATTCCTCGAAG
324 GACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGAAG
* * * * * *
2334 GAATGGATCATCTTGAATACTTTAAGGAATCGAACTTATAAAATAACTCATAAAAGTTTTACAAG
389 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* *
2399 TTCGGAAGTTCGACCAAGGACCAATAGACAAACAATTCTCTCCAAAATAAGTTTTTAATTCAAAG
454 TTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAG
* * * * * *
2464 ACAAAAAAATGTTTTACAAAATG-CTAAACTATTTGTACCGAATGATGCAATTTCCCGAGAAAGA
519 AC-AAAAAGT-TTTTACAAAATGAC-AAACTA-TTGGACCAAATGATGCGATTTCCCGAGAATGG
* * * *
2528 AATGTTTTGAAAATTTCTCGAAGGAAAGCATCGTTTTGAATACTTTAAGGAACCTAAGTTTTATA
580 AAT-TTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAG--TTATA
*
2593 AAAT
642 AAAG
* * * * *
2597 AACTTGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAGTTCTCACAA
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACCA
* * *
2662 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGAACCAAATAA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
* ** * *
2727 TGCAATTTCTCGAGCATGGAA-CATTCGAAATATTGCTCAAAGGAATGGATCGTCTTGAATACTT
131 TGCGATTTCTCGAGCATGGAATGTTTAGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* * * * ** **
2791 TAAGGAACCGAAGTTACAAAAGATCTCGTAAAAGTTTGAAAAGTTCAG-ATGACCGGCCAAGGAC
195 TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAT-TTCGGCCAA-GAC
* *
2855 CAAT-AGACAAACAATTCTCACCAAAATTAGTTTTTTATTCAAAGA-AAAAAGGTAT-TTTACAA
258 CAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAA-GT-TGTTTACAA
** ** *** * * *
2917 AACAACAAACTATTAAGACCAAATGATTTAATTTCTCGAGAATGGAATATTCGAAAAATTTCTCG
321 AATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCG
* * * * * *
2982 AAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAGTCCTAAAAGTTTTAC
386 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * * * * * **
3047 CAGTTCGGATGTCCGTCCAAGAACTAAGAGATAAACAATTCTCACCAAAATAACATTTTAATTCA
451 AAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* * * * * ** *
3112 AAGAC-AAAAGTTGTTTTCAAAATGAGAAACTAATTGGTCCAAATGATGCAATTTCTCGAGCTTT
516 AAGACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAGAATG
* * *
3176 GAATTTTCAGAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAA
579 GAATTTTC-GAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
3241 AAG
643 AAG
* * * * * * * **
3244 AACACGTAAAAGTTTTACCGGTTCGAATGTTCGTCCAAGAACTAAGAGAAAAACAATTCTTTCCA
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACCA
* *
3309 AAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAGTGA
66 AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
* ** * *
3374 TACGATTTCTCGAG-ACTGGAA-CATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT
131 TGCGATTTCTCGAGCA-TGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* ** * *** * *
3437 TTAAGGAACCTATGTTATTGAAGAACTCGTAAAACTTTGACAAGTTCAAAAGTTCAGCCAAGGAC
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAA-GAC
** *
3502 C-ATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCACAGACAAAAAGTTGTTTACAAAA
258 CAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * * **
3566 TGACAAACTATTTAGACCAAATGACGCAATTTCTCGAGCATGGAATGTTCGGGAAATTCCTCGAA
323 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGAA
* * * *
3631 GGAATGAATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACTCGTAAAAGTTTGAAAA
388 GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * *
3696 GTTCGTAAGTTCGGCCATGGACTAATAGACAAACAATTCTCACCAAAATAAGATTTTAATTCAAA
453 GTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAA
* * * * **
3761 GAC-AAAAGTTGTTTACAAAATGAAAAACTAATTGGACCAAATGATACAATTTCTCGAGCGTGGA
518 GACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAGAATGGA
* * *
3825 ATGTTTAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTTAA-GAAGCTGAAGTTATAAA
581 AT-TTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCT-AAGTTATAAA
3889 AG
644 AG
* * * * *
3891 CACTCGTAAAACTTTGA-CATGTTCGGAATTTCAG-CCAAGAACCATGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTTACCA-GTTCGG-ATGTCCGTCCAAGAACCATGAGACAAACAATTCTCAC
** * * * * * ** *
3954 GTAAATAAGTTTTTAATTCAAAGACAAAAAGTTATCTACTAAATGAGAAACTATTTAAATCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAAT
* * * * * * *
4019 GATGCGATTTCCCGAGCATGGAACG-CTCGAGAAATTTCTCAAAGGAATGGATCATCTTGAATA-
129 GATGCGATTTCTCGAGCATGGAATGTTTAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * ** * *
4082 TATTAAGGAACCAAAGTTACAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGG
193 T-TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAA-G
* * *
4147 ACCCAT-AGACAAACAATTCTCACCTAAATAAGTTTTTAATTCATAA-ACAAAACG-TGTTTTAC
256 ACCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA-AAGACAAAAAGTTG-TTTAC
* ** * * * *
4209 AAAATGACAAA-TATTTTGACCAAATGACACGATTTCTCGAGAATGGAAAGTTCGGAAAATTTCT
319 AAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCT
* * * * *
4273 TGAAGGAATGCATCAT-TCTGAATACTTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTT
384 CGAAGGAATGGATCGTCT-TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * ** * *
4337 TACCAGTTTGGATGTTC-GCCGAATAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAA
448 GACAAGTTCGGAAGTTCGGCC-AAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAA
* * * *
4401 TTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGTCTAAATCATGCGATTTCTCGAG
512 TTCAAAGACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAG
** * * * * *
4466 CTTTGAATTTTCAAAAAATTGCTCGAAGGAATAGATCATCTTGAATACTTTAA-GAGACCTAAGT
575 AATGGAATTTTC-GAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGA-ACCTAAGT
*
4530 TATAAAAA
638 TATAAAAG
* * * * * * * ** * *
4538 AACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACAAAT-TTACAAAAAATTCTCACG
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAAC-CATGAGACAAACAATTCTCACC
* * * * *
4602 TAAGTAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAATGAGAAAC-AATTTGGACCAAAT
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAA-TTGGACCAAAT
* * ** * * *
4666 GATGCGATATAC-CAAGCATGGAATGTACAGGAAATTGCTCGAAGGAATCGATCATCTTGAATAC
129 GATGCGAT-TTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* ** ** *
4730 TTTAAGGAACCGACCTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGGA
193 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAA-GA
4795 CCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAA
* *
4858 AATGACAAACTGTTTGGACCAAATGATGCGATTTCCCGAG-ACTGGAATGTTCGAAAAATTTCC-
321 AATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCA-TGGAATGTTCGAAAAA-TTCCT
* * * * * * *
4921 CGAAGGAAAGCATTGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAAGTTTT
384 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * * *
4986 ACCAGTTCGGATGTTCGTCCAAGAACTAAGAGACAAACAATTCTCACCAAAATAAGATTTTAATT
449 ACAAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATT
* * **
5051 CAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATACGATTTCTCGAGCG
514 CAAAGACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAGAA
* * * *
5115 TGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCATGTTGAATACTTTAAGGAACCGAAGTTAT
577 TGGAAT-TTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTAT
5180 AAAAG
641 AAAAG
* * * * * *
5185 AACTCGTAAAACTTTGA-CATGCTCGGAATTTCAG-CCAAGAACCATGAGACAAACAATTCTCAT
1 AACTCGTAAAAGTTTTACCA-GTTCGG-ATGTCCGTCCAAGAACCATGAGACAAACAATTCTCAC
** * * * * *
5248 GTAAATAAGTTTTTAATTTAAAGATAAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAAT
64 CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAAT
* * * * * * *
5313 TATGCGATTTCCCGAGCATTGAATGTTCAGGAAATTCCTCGAAGGAATGGATCATC-TGTAATAC
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTG-AATAC
* ** * * * *
5377 TTTAAGGAACCAAACATATAAAAGAACTC-CAAAATGTTTGACAAGTTTAGAAGTTCGGTCAAGG
193 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA-GTTTGACAAGTTTGGAATTTCGGCCAA-G
*
5441 ACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTAAAAGACAAAAAG-TGCTTTACA
256 ACCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACA
* * * * * * *
5504 AAATGACAAACTATTTGGACCAAATGATGAGGTTTCCCGAGAATGGAATGGTCGGAAAATTTCTC
320 AAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTC
* * * * * * *
5569 AAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAGTCGTAAAATTTTTA
385 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
** * * * * * * *
5634 CCTGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTGACTAAAATAAGATTTTAATTC
450 CAAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
* * * * * * **
5699 AAAGAC-AAAAGTTGTTTACAAAATGAAAAACTAAATGGACCAAATGGTGC-AATTCTCAAGCGT
515 AAAGACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAGAAT
* * * * *
5762 GGAATGTTTAGAAAATTGCTCGAAGGAATGGATAGTGTTGAATACTTTAAGGAACCTATGTTATT
578 GGAAT-TTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATA
*
5827 CAAG
642 AAAG
* * * * * * *
5831 AACTCGTAAAACTTTGACAAGTTTGGAATTTCAG-CCAAGAACCATGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTTACCAGTTCGG-ATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACC
* * * * * ** *
5895 TAAATAAGTTTTTAATTTAAAGACAAAAAATTTTGTTTACAAAATGAGAAACTATTTAAAGCAAA
65 AAAATAAGTTTTTAATTCAAAGAC-AAAAA-GTTGTTTACAAAATGACAAACTAATTGGACCAAA
* * * *
5960 TGATGCGATTTCTCGAGCATGGAATGTTTGGGAAATTCCTCGAAGGAATGGATCATCTTGAATAC
128 TGATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *
6025 TTTATGGAACCGAACTTATAAAAGGACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGGCAAAGGA
193 TTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAA-GA
6090 CCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAA
* * *
6153 AATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-AGAAAATTTCTA
321 AATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTCCT-
* * * * *
6217 C-AAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTT
384 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * ** * * * *
6281 ACCAGTTCGGATGTTCTTCAAAGAACCAAGAGACAAACAATTCTCACCAAAATAATTTTTTTAAT
449 ACAAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAA-GTTTTTAAT
* * * *
6346 TCAAATACAAAAAGTTGTTTCCAAAATGACAAACTAATTGGACCAAATGATGCGATTTCTCGAGC
513 TCAAAGACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAGA
* * *
6411 GTGGAATTTTCGGAAAATTGCT------AATGGATCATCTTGAATACTTTAAGGAACCTAAGTTA
576 ATGGAATTTTC-GAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTA
**
6470 TTCAAG
640 TAAAAG
* ** * * * * * **
6476 AACTCTTAAAACATTGACAAGTTCGAAATTTCAG-CCAAGAACCATGAGACAAACAATTCTCATG
1 AACTCGTAAAAGTTTTACCAGTTCG-GATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACC
* * * * * * *
6540 TAAATAAGTTTTAAATTCAAAGACAAAAAGTTATTTACTAAATGAGAAACTATTTAGACCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * * * *
6605 ATGCGATTTCCCGAGCATGGAATG-CTCGAGAAATTTCTCAAAGGAATGGATCGTCTTGAATACA
130 ATGCGATTTCTCGAGCATGGAATGTTTAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * *** *
6669 TTAAGGAACCAAAGTTAAAAAAGAACTCATAAAAGTTTGACAAGTTCAAAATTTCGACCAAGGAC
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAA-GAC
* * *
6734 TAAT-AGACAAACAATTCTCACCAAAATAAGATTTTAATTCAAAGAC-AAAAGTTGTTTACAATA
258 CAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAA
* * * * *
6797 TGACAAACTAATTGGACCAAATGATACGATTTCTCGAGCGTGGAATGTT-TAGAAAATTGCTCGA
323 TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTCCTCGA
* *
6861 AGGAATGGATCGTGTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAACTTTGACA
387 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * ** *
6926 AGTTCGGAATTTCAGCCAAGAACC-ATGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTA
452 AGTTCGGAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* ** * * * *
6990 AAGACAAAAAGTTGTTTACAAAATGAGAAACTATTTAAAGCATATGATACGATTTCCCGAGCATG
516 AAGACAAAAAGTT-TTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCCGAGAATG
** * * * * * * *
7055 GAATGGTCGGGAAATTCCTC-AATGTAAGGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
579 GAATTTTC-GAAAATTGCTCGAA-GGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATA
7119 AAAG
642 AAAG
* * * ** * *
7123 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTGGGCCAAGGACCAAT-AGACAAACAATTCTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACC-ATGAGACAAACAATTCTCACC
*
7187 AAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAAT
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAAT
* * * * * *
7251 GATACGATTTCCCGAGAATGGAATGTTTAGAAAATTTCTCGAAGG-ATGCATCGTTTTGAATACT
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * *
7315 TTAAGGAACCTAAGTTATAAAAG-A-----AAAA--TTGTACCAG-TTCGAATGTTAGTCCAAGA
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTG-ACAAGTTTGGAAT-TTCGGCCAAG-
* * * *
7371 ACCAA-GAGACAAACAATT-TCACCTAAATAAGTTTTTAATTCAAAGACGAATAGTTGTTCACAA
256 ACCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAA
* * * * * * * *
7434 AATCACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTGAATTTTCGAAAAGTTGCTCG
321 AATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCG
** * *
7499 AAGGAATATATCGTCTTGAATACTATAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGAC
386 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * * * * *** *
7564 AAGGTCGAAAGTTCGTCCAAGAACCAATTGATAAAAAATTCTCACGTGAATAAGTTTTTAACTCA
451 AAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* * * * *
7629 AAGACCAAAAGTTTTTTACAAAAT-TC--TC-A--CG--TAAA--A-GC-A--T---G-GAAT-G
516 AAGACAAAAAG-TTTTTACAAAATGACAAACTATTGGACCAAATGATGCGATTTCCCGAGAATGG
* * *
7675 ----TTCGGAAAATTGCTCGAAGGAATGGTTCATCTTT-AATACTCTAAGGAACCTAAGTTATAA
580 AATTTTC-GAAAATTGCTCGAAGGAATGGATCGT-TTTGAATACTTTAAGGAACCTAAGTTATAA
7735 AAG
643 AAG
* * * * * * * * *
7738 AACTTGTAAAAGTTTGACAACTTCAGATGTTCGGCCAAGGACCAAT-AGACAAACAATTGTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACC-ATGAGACAAACAATTCTCACC
* * * *
7802 AAAATAAGTTTTTAATTCAAAGAC-AAAATTTGTTTTACAAAATGATAAACTATTTGGACCAAAA
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTAATTGGACCAAAT
* * * * * * * * * * * *
7866 GATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTTCCCTAAGGAACGCATTGTTTTGAATATT
129 GATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * ** ** *
7931 TTAAGAAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACTGGTACGG-ATGTTCGTCCAAGAA
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAT-TTCGGCCAAG-A
* * *
7995 CC-ATGAGACAAACAATTCACACAAAAATAAGTTTTTAATTCAAACACAAAAAGTTGTTTACAAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * * *
8059 ATGACAAACTAATTGGACCAAATGATGCGATTTATCGAGTATGGAATATTCGAAAAATTGCTCGA
322 ATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGA
* * * *
8124 AGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTAGT-CAAGAACTCGTAAAACTTTGAC
387 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TAAAAGAACTCGTAAAAGTTTGAC
* ** * * *** * *
8188 ACGTTCGGAAGTTTAGCCAATGACC-GTGAGACAAACAATTCTCAAGTAAATAAGTCTCTAATTC
451 AAGTTCGGAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
*
8252 AAAGACAAAAAGTTGTTTACAAAACGAGAAACTATTTAGACCAAATGATGAGAAACTAATTGGTC
515 AAAGACAAAAAGTT-TTT-----AC---AAA--A--T-GA-C----------AAACT-ATTGGAC
* ** * ** *
8317 CAAATGATGCGATTTCTCGAGCTTTGAATTTTCGAAAAATTGCTCGAAGGAATAAATCGTCTTGA
554 CAAATGATGCGATTTCCCGAGAATGGAATTTTCG-AAAATTGCTCGAAGGAATGGATCGTTTTGA
8382 ATACTTTAAGGAACCTAAGTTAT-AAAG
618 ATACTTTAAGGAACCTAAGTTATAAAAG
* * * * * * *
8409 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAT-TGACAAAAAATTCTCACG
1 AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACC-ATGAGACAAACAATTCTCACC
* * * * *
8473 TAAATAAGTTTTTAACTCAAAAACCAAAAGTT-TTT------T-AC-AA--AATT----C---TC
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
**** * *
8520 A--CG---TAAAAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
** * *
8580 TAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGGAC
195 TAAGGAACCTAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAA-GAC
* *
8644 CAAT-AGATAAACAATTCTCACCAAAATAAGTTTTTAACTCAAAAGACAAAAAG-TGTTTTACAA
258 CAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC-AAAGACAAAAAGTTG-TTTACAA
* * * * * * *
8707 AATGACAAACTATTTTGACCAAATTATACGACTTC-CTGAGGATGGAATGTTC-AGAAATTTTCT
321 AATGACAAACTATTTGGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGA-AAAATTCCT
* * * * * *
8770 CTAAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTT
384 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * ** * * * * *
8835 ACCAGTTCGTATA-TTCATCAAAGAACTAAGAGACAAACAATTCTCACCAAAATAAGATTTTAAT
449 ACAAGTTCGGA-AGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAAT
* * * *
8899 TCGAAGAC-AAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATAATGCGATTTCTCGAGC
513 TCAAAGACAAAAAGTT-TTTACAAAATGACAAACT-ATTGGACCAAATGATGCGATTTCCCGAGA
* * * *
8963 GTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATTGTGTTGAATACTTTAAGGAACCTAAGTTA
576 ATGGAAT-TTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTA
**
9028 TTCAAG
640 TAAAAG
* * * * * * * * *
9034 AACTCGTAAAACTTTGT-CTAGTTTGGAAGTTCGGCCAAGAATCATGAGGC--A-AA--CTCACG
1 AACTCGTAAAAGTTT-TACCAGTTCGGATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACC
* * * * * * *
9093 TAAATAAGTTTTCAAGTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTGGGCCAATTG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * * * * *
9158 AGGCGATTTCTCGGGCATGGAATGTTCA-AGAAATTCCTCGAAAGAGTGGATCGTCTTCAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTTAGA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * * ** * *
9222 TTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTCGAGAAGTTCAGAAGTTCGGCCATGGAC
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCA-AGAC
** * * *
9287 CAATG-GGGAAACAATTCTCACAAAAATAAGTTCTTAATTCAAAGAAAAAAATAAGTTCGAAAGT
258 CAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAG--ACAAA-AAGTT-----GT
* * ** * * * * * *
9351 TCGTCCAAGAACCAATTGACAAAATATTTTCACGTAAAT-A--AG-TTT-T-TAAC-T-TAAAG-
315 T--T---ACAA--AA-TGACAAACTATTTGGAC-CAAATGATGCGATTTCTCGAGCATGGAATGT
* * * ** * * * ** * ** *
9407 ACCAAAAGTTGTTTAC-AA--AATGAGAAACAAT-TTG--GAC-AAAATGATGC-AA-TT-TACC
371 TCGAAAAATT-CCT-CGAAGGAATG-G-ATC-GTCTTGAATACTTTAAGGAACCGAAGTTATA-A
* * * * * * * * ** * * * *
9462 AAGCA-T-G-GAATGTTCGAAAAATTGCTCGAAGGAAT-GGATCATCTTGAATACTATA-AGGAA
430 AAGAACTCGTAAAAGTTTGACAAGTT-C-GGAA-G-TTCGG--C--CAAGGA-CCAATAGA-CAA
* * * * * ** * * * ****
9522 TCGAA--CTTA-CAAAAGAACTCGTAAAAGTTGGACAAGTTC-AGAAGTTCGGCCAAGGACCAAT
485 AC-AATTCTCACCAAAATAAGT-TTTTAA-TT-CA-AAG-ACAAAAAGTTTTTAC-A--A--AAT
* ** *** * ** ***
9583 AGACAAACAATTCTCACCAAAAT-ATGTTTTTAATTCAAAGAAAAAAAGTGTTTTAC-AAAA-TG
539 -GACAAACTATT-GGACC-AAATGATGCGATT--TCCCGAGAATGGAA---TTTT-CGAAAATTG
* * ** * **** * ** *** * *
9645 -ACAAACTATTTGGA-CCAAAT-AATGCGATTTCCCGGGAATGGAA-TGATAAAAA
595 CTCGAAGGA-ATGGATCGTTTTGAATAC--TTT--AAGGAACCTAAGTTATAAAAG
* ** * * ** **
9697 AATTTCTCGAAAGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGT-TATAAAAGAACTCGTA
1 AA---CTCG-TA-AA---A--GTTTT-ACCA-GTT-CGG-A--T--GTCCGTCCAAGAAC-C---
*** ** * * ***** ** *
9761 AAATTTTACCAGTTCGAATGTTCCTC-CAAGAACCATGAGACAAACAATTCTCA-CCAAAATAAG
44 --ATGAGA-CA-AAC-AA--TT-CTCACCA-AA--ATAAG-TTTTTAATTCAAAGAC-AAA-AAG
* * ** * *
9824 TT-TTTA-ATTCAAAT-ACAAA--AAGTTGTTTA-AAAATGACAAACTAATTGGTC-CAAATG-A
95 TTGTTTACA---AAATGACAAACTAA-TTG--GACCAAATG--ATGC-GATT--TCTC-GA-GCA
** * * * * *** * *
9881 TGCG-AT-TTCTCGAGCTTTGAATT-TTCGAA-AAATTGCTCG-AAGGAATGGATCGTTT-TGAA
147 TG-GAATGTT-T--AG---AAAATTGCTCGAAGGAATGGATCGTCTTGAAT--A-C-TTTAAGGA
* ** *** * * * * * * * *
9940 TACTTTAAGGAACCTAAGTTATTCAT-GAA-CTTGTAAAACTTTGACAAGTTT-GG--AAGTTTG
201 -AC-CTAAGTTATAAAAG-AACTCGTAAAAGTTTG-ACAAGTTTG-GAA-TTTCGGCCAA----G
* * ** * *
10000 GCCAA-GAACCATGAGACAAACAATTCTCACGTAAATAA-TATTTTAACTCAAAGACAAAAACTT
256 ACCAATG----A-GACA-AA-CAATTCTCACCAAAATAAGT-TTTTAATTCAAAGACAAAAAGTT
* * * *
10063 GTTTACAAAATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATGCAATGTTC-AACA
313 GTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAA-A
* ** *
10127 AATTCCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACACGTAA
377 AATTCCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* **
10192 AAGTTTGAGAAGTTCAAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATATA-T
442 AAGTTTGACAAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATA-AGT
10256 TTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT
506 TTTTAATTCAAAGACAAAAAGT-TTTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTT
* ** * * * *
10321 CCCGAGACTGGAACAATACAAAAATTTCTCGAAGGAATGGATCGTTTTCAATACTTTAAGGAACC
569 CCCGAGAATGGAA-TTTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACC
10386 TAAGTTATAAAAG
633 TAAGTTATAAAAG
*
10399 AACTCGTAAAA-TTTTACCAGTTCGGATGTTCC-TCCAAGAACCATGAGACAAACACTTCTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATG-TCCGTCCAAGAACCATGAGACAAACAATTCTCACC
** * *
10462 AAAATAAGTTTTTAATTCAAATTCAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * *
10527 ATGCGATTTCTCGAGCTTTGAAT-TTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
** * * *
10591 TTAAGGAACCTAAGTTATTCATGAACTTGTAAAACTTTGACAAGTTTGGAAGTTT-GGCCAAGAA
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAA-TTTCGGCCAAG-A
** * * *
10655 CC-ATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTACAAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * * * * *
10719 ATGATAAACTATTTGGACCAATTGAAGCGATTTCCCGAGCATGCAATGTTCGACAAATTCCTTGA
322 ATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGA
** *
10784 AGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAA-AACTCGTAAAAGTTTGAGA
387 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
** * *
10848 AGTTCAAAATTTCGGCCAAGGACCAATAGAAAAACAATTCTCACCAAAATAAGTTTTTAATTCAA
452 AGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAA
* * * *
10913 AGGCAAAAAGTGTTTTACAAAATGACAAACTATTTGGATCAAATGATGCTATTTCCCGAGAATAG
517 AGACAAAAAGT-TTTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCCGAGAATGG
** ** * * *
10978 AATGATAAAAAATTTTCTCGAAGGAATGCATCGTTTTCAATACTTTAAGGAACCTAAGTTATAAA
580 AATTTTCGAAAA-TTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAA
11043 AG
644 AG
*
11045 AACTCTTAAAA-TTTTACCAGTTCGGATGTTCC-TCCAAGAACCATGAGACAAACAATTCTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATG-TCCGTCCAAGAACCATGAGACAAACAATTCTCACC
* * * *
11108 AAAATAAATTTTTAATTCAAATACAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * * * * *
11173 ATGTGATTTCTCGAGCTTTGAAT-TTTCGAAAAATTGCTCGAAGGAATGGATGGTTTTGAGTACT
130 ATGCGATTTCTCGAGCATGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
** * * *
11237 TTAAGGAACCTAAGTTATTCATGAACTTGTAAAACTTTGACAAGTTTGGAAGTTT-GGCCAAGAA
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAA-TTTCGGCCAAG-A
** * * *
11301 CC-ATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTACAAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
** * * *
11365 ATGATTAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATGCAATGTTCGAAAAATTCCTCGA
322 ATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGA
* ** *
11430 AGGAATGGATCGTCTTGAATACTATAAGGAATTGAAGTTATAAAAGAACTCGTAAAAGTTTGAGA
387 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
**
11495 AGTTCAAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATATA-TTTTTAATTCA
452 AGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATA-AGTTTTTAATTCA
*
11559 AAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGACTG
516 AAGACAAAAAGT-TTTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCCGAGAATG
** * * * *
11624 GAACAATACAAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
579 GAA-TTTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
11689 AAG
643 AAG
* *
11692 AACTCGTAAAA-TTTTACCAGTTCGGATGTTCC-TCCAAGAACCATGAGACAAACACTTCTTACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATG-TCCGTCCAAGAACCATGAGACAAACAATTCTCACC
** * *
11755 AAAATAAGTTTTTAATTCAAATTCAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * * *
11820 ATGCGATTTCTCGAGCTTTGAAT-TTTCAAAAAATTGCTCGAAGGAATGGATTGTTTTGAATACT
130 ATGCGATTTCTCGAGCATGGAATGTTT-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
** * * *
11884 TTAAGGAACCTAAGTTATTCATGAACTTGTAAAACTTTGACAAGTTTGGAAGTTT-GGCCAAGAA
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAA-TTTCGGCCAAG-A
** * *
11948 CC-ATGAGACAAACAATTCTCACGTAAATAA-TATTTTAACTCAAAGACAAAAACTTGTTTACAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGT-TTTTAATTCAAAGACAAAAAGTTGTTTACAA
* * * *
12011 AATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATGCAATGTTC-AACAAATTCCTC
321 AATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAA-AAATTCCTC
* ** *
12075 GAAAGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACACGTAAAAGTTTGA
385 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
* **
12140 GAAGTTCAAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATATA-TTTTTAATT
450 CAAGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATA-AGTTTTTAATT
*
12204 CAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGAC
514 CAAAGACAAAAAGT-TTTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCCGAGAA
** * * * *
12269 TGGAACAATACAAAAATTTCTCGAAGGAATGGATCGTTTTCAATACTTTAAGGAACCTAAGTTAT
577 TGGAA-TTTTCGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTAT
12334 AAAAG
641 AAAAG
*
12339 AACTCGTAAAA-TTTTACCAGTTCGGATGTTCC-TCCAAGAACCATGAGACAAACACTTCTCACC
1 AACTCGTAAAAGTTTTACCAGTTCGGATG-TCCGTCCAAGAACCATGAGACAAACAATTCTCACC
* * *
12402 AAAATAAGTTTTTAATTCAAATACAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATG
65 AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATG
* * * * *
12467 ATGCGATTTCTCGAGCTTTGAAT-TTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAGTACT
130 ATGCGATTTCTCGAGCATGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
** * ** *
12531 TTAAGGAACCTAAGTTATTCATGAACTTTTAAAACTTTGACAAGTTTGGAAGTTT-GGCCAAGAA
194 TTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAA-TTTCGGCCAAG-A
** * * *
12595 CC-ATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTACAAA
257 CCAATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAA
* * * * * *
12659 ATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATGCAATGTTCGACAAATTCCTCAA
322 ATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGA
*** * *
12724 AGGAATGGATCGTCTTGAATACTTTAAGGAATATAAATTATAAAAGAACTCGTAAAAGTTTGAGA
387 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
**
12789 AGTTCAAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAA
452 AGTTCGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAA
*
12854 AGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGGTTTCCCGAGAATGG
517 AGACAAAAAGT-TTTTACAAAATGACAAACTA-TTGGACCAAATGATGCGATTTCCCGAGAATGG
*
12919 AATGTTCGAAAA
580 AATTTTCGAAAA
12931 AATTTTAATT
Statistics
Matches: 10368, Mismatches: 1454, Indels: 922
0.81 0.11 0.07
Matches are distributed among these distances:
614 4 0.00
615 202 0.02
616 42 0.00
617 1 0.00
619 1 0.00
620 36 0.00
621 4 0.00
622 7 0.00
623 36 0.00
624 304 0.03
625 46 0.00
626 1 0.00
627 2 0.00
628 3 0.00
629 4 0.00
630 2 0.00
631 3 0.00
632 3 0.00
634 2 0.00
635 4 0.00
636 3 0.00
638 38 0.00
639 225 0.02
640 15 0.00
641 80 0.01
642 175 0.02
643 328 0.03
644 14 0.00
645 137 0.01
646 1023 0.10
647 3929 0.38
648 1318 0.13
649 522 0.05
650 505 0.05
651 485 0.05
652 14 0.00
653 9 0.00
654 11 0.00
655 17 0.00
656 19 0.00
657 15 0.00
658 29 0.00
659 26 0.00
660 21 0.00
661 15 0.00
662 14 0.00
663 24 0.00
664 9 0.00
665 3 0.00
666 7 0.00
667 7 0.00
668 18 0.00
669 16 0.00
670 11 0.00
671 83 0.01
672 59 0.01
673 7 0.00
674 2 0.00
675 3 0.00
676 3 0.00
677 3 0.00
678 3 0.00
680 5 0.00
681 3 0.00
683 2 0.00
684 8 0.00
685 1 0.00
686 2 0.00
687 2 0.00
688 2 0.00
689 2 0.00
690 2 0.00
691 4 0.00
692 2 0.00
694 1 0.00
696 1 0.00
697 7 0.00
698 1 0.00
699 11 0.00
700 16 0.00
701 20 0.00
702 18 0.00
703 10 0.00
704 16 0.00
705 14 0.00
706 37 0.00
707 9 0.00
708 5 0.00
709 13 0.00
710 8 0.00
711 18 0.00
712 16 0.00
713 36 0.00
714 28 0.00
715 20 0.00
716 6 0.00
717 3 0.00
718 9 0.00
719 8 0.00
720 9 0.00
721 14 0.00
722 27 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (645 bp):
AACTCGTAAAAGTTTTACCAGTTCGGATGTCCGTCCAAGAACCATGAGACAAACAATTCTCACCA
AAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGA
TGCGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
AAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAATTTCGGCCAAGACCAA
TGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGA
CAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTCCTCGAAGGA
ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
CGGAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC
AAAAAGTTTTTACAAAATGACAAACTATTGGACCAAATGATGCGATTTCCCGAGAATGGAATTTT
CGAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAG
Found at i:7824 original size:192 final size:192
Alignment explanation
Indices: 7478--7844 Score: 490
Period size: 192 Copynumber: 1.9 Consensus size: 192
7468 CTCGAGCTTT
* *
7478 GAATTTTCGAAAAGTTGCTCGAAGGAATATATCGTCTTGAATACTATAAGGAACCTAAGTTATAA
1 GAATGTTCGAAAAGTTGCTCGAAGGAATATATCATCTTGAATACTATAAGGAACCTAAGTTATAA
* * * *
7543 AAGAACTCGTAAAAGTTTGACAAGGTCGAAAGTTCGTCCAAGAACCAATTGATAAAAAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAACGTCGAAAGTTCGGCCAAGAACCAATAGACAAAAAATTCTCA
***
7608 CGTGAATAAGTTTTTAACTCAAAGACCAAAAGTT-TTTTACAAAATTCTCACGTAAAAGCATG
131 CCAAAATAAGTTTTTAACTCAAAGA-CAAAAGTTGTTTTACAAAATTCTCACGTAAAAGCATG
* * *
7670 GAATGTTCGGAAAA-TTGCTCGAAGGAATGGT-TCATCTTTAATACTCTAAGGAACCTAAGTTAT
1 GAATGTTC-GAAAAGTTGCTCGAAGGAAT-ATATCATCTTGAATACTATAAGGAACCTAAGTTAT
* * * * * *
7733 AAAAGAACTTGTAAAAGTTTGACAACTTC-AGATGTTCGGCCAAGGACCAATAGACAAACAATTG
64 AAAAGAACTCGTAAAAGTTTGACAACGTCGA-AAGTTCGGCCAAGAACCAATAGACAAAAAATTC
* *
7797 TCACCAAAATAAGTTTTTAATTCAAAGACAAAATTTGTTTTACAAAAT
128 TCACCAAAATAAGTTTTTAACTCAAAGACAAAAGTTGTTTTACAAAAT
7845 GATAAACTAT
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
191 8 0.05
192 137 0.91
193 6 0.04
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (192 bp):
GAATGTTCGAAAAGTTGCTCGAAGGAATATATCATCTTGAATACTATAAGGAACCTAAGTTATAA
AAGAACTCGTAAAAGTTTGACAACGTCGAAAGTTCGGCCAAGAACCAATAGACAAAAAATTCTCA
CCAAAATAAGTTTTTAACTCAAAGACAAAAGTTGTTTTACAAAATTCTCACGTAAAAGCATG
Found at i:8054 original size:23 final size:23
Alignment explanation
Indices: 8008--8054 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7998 TGAGACAAAC
*
8008 AATTCACACAAAAATAAGTTTTT
1 AATTCAAACAAAAATAAGTTTTT
*
8031 AATTCAAACACAAA-AAGTTGTTT
1 AATTCAAACAAAAATAAGTT-TTT
8054 A
1 A
8055 CAAAATGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (23 bp):
AATTCAAACAAAAATAAGTTTTT
Found at i:8057 original size:216 final size:214
Alignment explanation
Indices: 7680--8301 Score: 694
Period size: 216 Copynumber: 2.9 Consensus size: 214
7670 GAATGTTCGG
* * ** * * *
7680 AAAATTGCTCGAAGGAATGGTTCATCTTTAATACTCTAAGGAACCTAAGTTATAAAAGAACTTGT
1 AAAATTGCCCGAAGGAACGCATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGT
* * * *
7745 AAAAGTTTGACAACTTCAGATGTTCGGCCAAGGACCAAT-AGACAAACAATTGTCACCAAAATAA
66 AAAAGTTTGACAAGTTCGGATGTTC-GCCAA-GACC-ATGAGACAAACAATTCTCACAAAAATAA
* * *
7809 GTTTTTAATTCAAAGAC-AAAATTTGTTTTACAAAATGATAAACTATTTGGACCAAAAGATGCGA
128 GTTTTTAATTCAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGA
* *
7873 TTTCCCGAGAATGGAATGTTCAA
192 TTTACCGAGAATGGAATATTCAA
* * ** * * *
7896 AAAATTTCCCTAAGGAACGCATTGTTTTGAATATTTTAAGAAACCTAAGTTATAAAAGAACTCGT
1 AAAATTGCCCGAAGGAACGCATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGT
* ** * *
7961 AAAAGTTTTACTGGTACGGATGTTCGTCCAAGAACCATGAGACAAACAATTCACACAAAAATAAG
66 AAAAGTTTGACAAGTTCGGATGTTCG-CCAAG-ACCATGAGACAAACAATTCTCACAAAAATAAG
* *
8026 TTTTTAATTCAAACACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATT
129 TTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATT
* * *
8091 TATCGAGTATGGAATATTCGA
194 TACCGAGAATGGAATATTCAA
* * * *
8112 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGTTAGT-CAAGAACTCG
1 AAAATTGCCCGAAGGAACGCATCATCTTGAATACTTTAAGGAACCTAAGTTA-TAAAAGAACTCG
* * * * * *
8176 TAAAACTTTGACACGTTCGGAAGTTTAGCCAATGACCGTGAGACAAACAATTCTCA-AGTAAATA
65 TAAAAGTTTGACAAGTTCGGATG-TTCGCCAA-GACCATGAGACAAACAATTCTCACA-AAAATA
* * * * *
8240 AGTCTCTAATTCAAAGACAAAAAGTTGTTTACAAAACGAGAAACTATTTAGACCAAATGATG
127 AGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATG
8302 AGAAACTAAT
Statistics
Matches: 337, Mismatches: 61, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
215 5 0.01
216 320 0.95
217 12 0.04
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (214 bp):
AAAATTGCCCGAAGGAACGCATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGATGTTCGCCAAGACCATGAGACAAACAATTCTCACAAAAATAAGTT
TTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTA
CCGAGAATGGAATATTCAA
Found at i:8304 original size:24 final size:24
Alignment explanation
Indices: 8277--8325 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
8267 TTTACAAAAC
*
8277 GAGAAACTATTTAGACCAAATGAT
1 GAGAAACTAATTAGACCAAATGAT
* *
8301 GAGAAACTAATTGGTCCAAATGAT
1 GAGAAACTAATTAGACCAAATGAT
8325 G
1 G
8326 CGATTTCTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.24
Consensus pattern (24 bp):
GAGAAACTAATTAGACCAAATGAT
Found at i:8680 original size:193 final size:193
Alignment explanation
Indices: 8352--8709 Score: 567
Period size: 193 Copynumber: 1.9 Consensus size: 193
8342 GAATTTTCGA
*
8352 AAAATTGCTCGAAGGAATAAATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAGAACTCGTA
1 AAAATTGCTCGAAGGAATAAATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAGAACTCGTA
* * * **
8417 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATTGACAAAAAATTCTCACGTAAATAAGT
66 AAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAATAGACAAAAAATTCTCACCAAAATAAGT
* *
8482 TTTTAACTCAAAA-ACCAAAAGTTTTTTACAAAATTCTCACGTAAAAAGCATGGAATGTTCAG
131 TTTTAACTCAAAAGACAAAAAGTGTTTTACAAAATTCTCACGTAAAAAGCATGGAATGTTCAG
**
8544 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATAAATCATCTTGAATACTTTAAGGAACCTAA-GTTAT-AAAGAACTCG
* * *
8608 TAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGGACCAATAGATAAACAATTCTCACCAAAATAA
64 TAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAATAGACAAAAAATTCTCACCAAAATAA
8673 GTTTTTAACTCAAAAGACAAAAAGTGTTTTACAAAAT
129 GTTTTTAACTCAAAAGACAAAAAGTGTTTTACAAAAT
8710 GACAAACTAT
Statistics
Matches: 150, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
191 2 0.01
192 47 0.31
193 82 0.55
194 19 0.13
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (193 bp):
AAAATTGCTCGAAGGAATAAATCATCTTGAATACTTTAAGGAACCTAAGTTATAAAGAACTCGTA
AAAGTTTGACAAGTTCAGAAGTTCGACCAAGAACCAATAGACAAAAAATTCTCACCAAAATAAGT
TTTTAACTCAAAAGACAAAAAGTGTTTTACAAAATTCTCACGTAAAAAGCATGGAATGTTCAG
Found at i:9276 original size:211 final size:208
Alignment explanation
Indices: 8529--9281 Score: 748
Period size: 215 Copynumber: 3.5 Consensus size: 208
8519 CACGTAAAAA
8529 GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACC-AATG
1 GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAA-G
* * *
8593 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGACCAAGGACCAATAGATAAACAA
65 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAA-GAACAAT-G--AGACAA
* * *
8658 TTCTCACCAAAATAAGTTTTTAACTCAAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTT
126 -ACTCACCAAAATAAG-TTTTAACTC-AAAGACAAAAATTG-TTTACAAAATGACAAACTATTTG
* *
8723 GACCAAATTATACGACTTC-CTGAG
187 GACC-AATTATGCGATTTCTC-G-G
* * * * *
8747 G-ATGGAATGTTCAGAAATTTTCTCTAAGGAATGCATCATTTTGAATACTTTAAGGAACCTAAGT
1 GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGT
* * ** *
8811 TATAAAAGAACTCGTAAAAGTTTTACCAGTTC-GTATA-TTCATCAAAGAACTAA-GAGACAAAC
66 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-A-AGTTCGGCCAAGAAC-AATGAGAC--A-
* * * *
8873 AATTCTCACCAAAATAAGATTTTAATTCGAAGACAAAAGTTGTTTACAAAATGACAAACTAATTG
125 AA--CTCACCAAAATAAG-TTTTAACTCAAAGACAAAAATTGTTTACAAAATGACAAACTATTTG
* *
8938 GACCAAATAATGCGATTTCTCGA
187 GACC-AATTATGCGATTTCTCGG
* * ** *
8961 GCGTGGAATGTTTAGAAAATTGCTCGAAGGAATGGATTGTGTTGAATACTTTAAGGAACCTAAGT
1 GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGT
** * * * ** *
9026 TATTCAAGAACTCGTAAAACTTTGTCTAGTTTGGAAGTTCGGCCAAGAATC-ATGAGGCAAACTC
66 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGAA-CAATGAGACAAACTC
** * *
9090 ACGTAAATAAGTTTTCAAGTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTGGGCCAA
130 ACCAAAATAAGTTTT-AACTCAAAGACAAAAA-TTGTTTACAAAATGACAAACTATTTGGACCAA
*
9155 TTGAGGCGATTTCTCGG
193 TT-ATGCGATTTCTCGG
* * * * * * *
9172 GCATGGAATGTTCA-AGAAATTCCTCGAAAGAGTGGATCGTCTTCAATACTTTAAGGAATCGAAG
1 GCATGGAATGTTCAGA-AAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAG
* *
9236 TTATAAAAGAACTCGTAAAAGTTCGAGAAGTTCAGAAGTTCGGCCA
65 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCA
9282 TGGACCAATG
Statistics
Matches: 443, Mismatches: 73, Indels: 45
0.79 0.13 0.08
Matches are distributed among these distances:
209 4 0.01
210 29 0.07
211 129 0.29
212 2 0.00
213 4 0.01
214 3 0.01
215 133 0.30
216 19 0.04
217 116 0.26
218 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (208 bp):
GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCTAAGT
TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGAACAATGAGACAAACTCA
CCAAAATAAGTTTTAACTCAAAGACAAAAATTGTTTACAAAATGACAAACTATTTGGACCAATTA
TGCGATTTCTCGG
Found at i:9727 original size:216 final size:216
Alignment explanation
Indices: 9339--12931 Score: 4174
Period size: 216 Copynumber: 16.7 Consensus size: 216
9329 AGAAAAAAAT
* * * * **
9339 AAGTTCGAAAGTTCGTCCAAGAACCAAT-TGACAAA-ATATTTTCACGTAAATAAGTTTTTAACT
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACA-ATTCTCACCAAAATAAGTTTTTAA-T
* * * * * *
9402 T-AAAGACCAAAAGTTGTTTACAAAATGAGAAACAATTTGGACAAAATGATGCAATTTAC-CAAG
63 TCAAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT-CTCGAG
* * * * * *
9465 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTATAAGGAATCGAACTT
127 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTT
* *
9530 ACAAAAGAACTCGTAAAAGTTGGAC
192 ATAAAAGAACTCGTAAAAGTTTGAC
* * *
9555 AAGTTCAGAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATATGTTTTTAATTC
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
* * * * *
9619 AAAGAAAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATAATGCGATTTCCCGGGAA
65 AAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCA
* ** * * *
9683 TGGAATGATAAAAAAATTTCTCGAAAGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTAT
129 TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTAT
*
9748 AAAAGAACTCGTAAAA-TTTTAC
194 AAAAGAACTCGTAAAAGTTTGAC
* **
9770 CAGTTC-GAATGTTCCTCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
1 AAGTTCGGAA-GTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
* * * *
9834 AAATACAAAAAGTTGTTTA-AAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTT
65 AAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCAT
* * *
9898 TGAATTTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATT
130 GGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATA
* * * *
9963 CATGAACTTGTAAAACTTTGAC
195 AAAGAACTCGTAAAAGTTTGAC
* * ** *
9985 AAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAA-TATTTTAACTC
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGT-TTTTAATTC
* * * *
10049 AAAGACAAAAACTTGTTTACAAAATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCAT
65 AAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCAT
* * * * *
10114 GCAATGTTC-AACAAATTCCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-TTGAAGTTA
130 GGAATGTTCGAA-AAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCT-AAGTTA
* *
10177 TAAAAGAACACGTAAAAGTTTGAG
193 TAAAAGAACTCGTAAAAGTTTGAC
** *
10201 AAGTTCAAAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATATA-TTTTTAATT
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACAATTCTCACCAAAATA-AGTTTTTAATT
*
10264 CAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAG-
64 CAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGC
** * * *
10327 ACTGGAACAATAC-AAAAATTTCTCGAAGGAATGGATCGTTTTCAATACTTTAAGGAACCTAAGT
128 A-TGGAA-TGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGT
*
10391 TATAAAAGAACTCGTAAAA-TTTTAC
191 TATAAAAGAACTCGTAAAAGTTTGAC
* * ** *
10416 CAGTTCGGATGTTCCTCCAAGAACCATGAGACAAACACTTCTCACCAAAATAAGTTTTTAATTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
** * * * * *
10481 AATTCAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTT
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* **
10546 GAATTTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATTC
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
* * *
10611 ATGAACTTGTAAAACTTTGAC
196 AAGAACTCGTAAAAGTTTGAC
* * ** * *
10632 AAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* * * * *
10697 AAGACAAAAACTTGTTTACAAAATGATAAACTATTTGGACCAATTGAAGCGATTTCCCGAGCATG
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* * * * * *
10762 CAATGTTCGACAAATTCCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-TTGAAGTTATA
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCT-AAGTTATA
*
10826 AAA-AACTCGTAAAAGTTTGAG
195 AAAGAACTCGTAAAAGTTTGAC
** * * *
10847 AAGTTCAAAATTTCGGCCAAGGACCAAT-AGAAAAACAATTCTCACCAAAATAAGTTTTTAATTC
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
* * * * *
10911 AAAGGCAAAAAG-TGTTTTACAAAATGACAAACTATTTGGATCAAATGATGCTATTTCCCGAGAA
65 AAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCA
* * * * * *
10975 TAGAATGAT-AAAAAATTTTCTCGAAGGAATGCATCGTTTTCAATACTTTAAGGAACCTAAGTTA
129 TGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTA
* *
11039 TAAAAGAACTCTTAAAA-TTTTAC
193 TAAAAGAACTCGTAAAAGTTTGAC
* * ** *
11062 CAGTTCGGATGTTCCTCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAATTTTTAATTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* * * * * * *
11127 AATACAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATGATGTGATTTCTCGAGCTTT
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* * * **
11192 GAATTTTCGAAAAATTGCTCGAAGGAATGGATGGTTTTGAGTACTTTAAGGAACCTAAGTTATTC
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
* * *
11257 ATGAACTTGTAAAACTTTGAC
196 AAGAACTCGTAAAAGTTTGAC
* * ** * *
11278 AAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* ** * *
11343 AAGACAAAAACTTGTTTACAAAATGATTAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATG
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* * * * *
11408 CAATGTTCGAAAAATTCCTCGAAGGAATGGATCGTCTTGAATACTATAAGGAA-TTGAAGTTATA
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCT-AAGTTATA
*
11472 AAAGAACTCGTAAAAGTTTGAG
195 AAAGAACTCGTAAAAGTTTGAC
** *
11494 AAGTTCAAAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATATA-TTTTTAATT
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACAATTCTCACCAAAATA-AGTTTTTAATT
*
11557 CAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAG-
64 CAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGC
** * * *
11620 ACTGGAACAATAC-AAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGT
128 A-TGGAA-TGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGT
*
11684 TATAAAAGAACTCGTAAAA-TTTTAC
191 TATAAAAGAACTCGTAAAAGTTTGAC
* * ** * *
11709 CAGTTCGGATGTTCCTCCAAGAACCATGAGACAAACACTTCTTACCAAAATAAGTTTTTAATTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
** * * * * *
11774 AATTCAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTT
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* * * **
11839 GAATTTTCAAAAAATTGCTCGAAGGAATGGATTGTTTTGAATACTTTAAGGAACCTAAGTTATTC
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
* * *
11904 ATGAACTTGTAAAACTTTGAC
196 AAGAACTCGTAAAAGTTTGAC
* * ** *
11925 AAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAA-TATTTTAACTC
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGT-TTTTAATTC
* * * *
11989 AAAGACAAAAACTTGTTTACAAAATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCAT
65 AAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCAT
* * * * *
12054 GCAATGTTC-AACAAATTCCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-TTGAAGTTA
130 GGAATGTTCGAA-AAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCT-AAGTTA
* *
12117 TAAAAGAACACGTAAAAGTTTGAG
193 TAAAAGAACTCGTAAAAGTTTGAC
** *
12141 AAGTTCAAAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATATA-TTTTTAATT
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACAATTCTCACCAAAATA-AGTTTTTAATT
*
12204 CAAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAG-
64 CAAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGC
** * * *
12267 ACTGGAACAATAC-AAAAATTTCTCGAAGGAATGGATCGTTTTCAATACTTTAAGGAACCTAAGT
128 A-TGGAA-TGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGT
*
12331 TATAAAAGAACTCGTAAAA-TTTTAC
191 TATAAAAGAACTCGTAAAAGTTTGAC
* * ** *
12356 CAGTTCGGATGTTCCTCCAAGAACCATGAGACAAACACTTCTCACCAAAATAAGTTTTTAATTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* * * * * *
12421 AATACAAAAAGTTGTTTAAAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTT
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* * **
12486 GAATTTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAGTACTTTAAGGAACCTAAGTTATTC
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
* ** *
12551 ATGAACTTTTAAAACTTTGAC
196 AAGAACTCGTAAAAGTTTGAC
* * ** * *
12572 AAGTTTGGAAGTTTGGCCAAGAACCATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCA
1 AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
* * * *
12637 AAGACAAAAACTTGTTTACAAAATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATG
66 AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
* * * * * ** *
12702 CAATGTTCGACAAATTCCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAATATAAATTATAA
131 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
*
12767 AAGAACTCGTAAAAGTTTGAG
196 AAGAACTCGTAAAAGTTTGAC
** *
12788 AAGTTCAAAAGTTCGGCCAAGGACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
1 AAGTTCGGAAGTTCGGCCAAGAACC-ATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTC
* * *
12852 AAAGACAAAAAG-TGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGGTTTCCCGAGAA
65 AAAGACAAAAAGTTG-TTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCA
12916 TGGAATGTTCGAAAAA
129 TGGAATGTTCGAAAAA
12932 ATTTTAATTC
Statistics
Matches: 2830, Mismatches: 482, Indels: 130
0.82 0.14 0.04
Matches are distributed among these distances:
214 135 0.05
215 1027 0.36
216 1641 0.58
217 27 0.01
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (216 bp):
AAGTTCGGAAGTTCGGCCAAGAACCATGAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCA
AAGACAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATG
GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACCTAAGTTATAA
AAGAACTCGTAAAAGTTTGAC
Found at i:13256 original size:356 final size:360
Alignment explanation
Indices: 12590--13287 Score: 854
Period size: 356 Copynumber: 1.9 Consensus size: 360
12580 AAGTTTGGCC
* *
12590 AAGAACCATGAGACAAACAATTCTCACGTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTA
1 AAGAACCAAGAGACAAACAATTCTCACCTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTA
* * * *
12655 CAAAATGATAAACTATTTGGACCAATTGAAGCGATTTCTCGAGCATGCAATGTTCGACAAATTCC
66 CAAAATGACAAACTAATTGGACCAAATGAAGCGATTTCTCGAGCATGCAATGTTCGAAAAATTCC
* * *
12720 TCAAAGGAATGGATCGTCTTGAATACTTTAAGGAATATAAATTATAAAAGAACTCGTAAAAGTTT
131 T---AGGAATGGA--GTCTTGAATACTTTAAGGAACATAAACTATAAAAGAACTAGTAAAAGTTT
* * * *
12785 GAGAAGTTCAAAAGTTCGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAAT
191 CACAAGTTCAAAAGTTCGGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAAC
* * * * * *
12850 TCAAAGACAAAAAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGGTTTCCCGAGA
256 TCAAAGACAAAAAGTGTTTTACAAAACGACAAACAATTTGGACAAAATGATGCGATTTACCAAGA
12915 ATGGAATGTTC-GAAAAAATTTTAATTCGGATGTTCGTCA
321 ATGGAATGTTCAGAAAAAATTTTAATTCGGATGTTCGTCA
* * * *
12954 AAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAATAGTTGTTTA
1 AAGAACCAAGAGACAAACAATTCTCACCTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTA
* * * * * *
13019 CAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTG-AATTTTTGAAAAATTG
66 CAAAATGACAAACTAATTGGACCAAATGAAGCGATTTCTCGAGC-ATGCAATGTTCGAAAAATTC
* * *
13083 CT-TGAA-GG-GTCTT-ACATACTTTAAGGAACCTAAGCTATAAAAGAACTAGTAAAAGTTTCAC
130 CTAGGAATGGAGTCTTGA-ATACTTTAAGGAACATAAACTATAAAAGAACTAGTAAAAGTTTCAC
** ** * * **
13144 AAGTTCGGAAGTTCGTTCAAGAACCAATTGATAAA-ATATTCTCACGTAAATAAGTTTTTAACTC
194 AAGTTCAAAAGTTCGGCCAAGAACCAATAGACAAACA-ATTCTCACCAAAATAAGTTTTTAACTC
* * * **
13208 AAAGACCAAAAATTG-TTTACAAAACGAGAAACAATTTGGGCAAAATGATGCGATTTACCAAGCG
258 AAAGA-CAAAAAGTGTTTTACAAAACGACAAACAATTTGGACAAAATGATGCGATTTACCAAGAA
13272 TGGAATGTTCAGAAAA
322 TGGAATGTTCAGAAAA
13288 TTGCTCGAAG
Statistics
Matches: 284, Mismatches: 45, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
355 2 0.01
356 150 0.53
357 13 0.05
359 2 0.01
360 3 0.01
364 112 0.39
365 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (360 bp):
AAGAACCAAGAGACAAACAATTCTCACCTAAATAAGATTTTAACTCAAAGACAAAAACTTGTTTA
CAAAATGACAAACTAATTGGACCAAATGAAGCGATTTCTCGAGCATGCAATGTTCGAAAAATTCC
TAGGAATGGAGTCTTGAATACTTTAAGGAACATAAACTATAAAAGAACTAGTAAAAGTTTCACAA
GTTCAAAAGTTCGGCCAAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAACTCAAA
GACAAAAAGTGTTTTACAAAACGACAAACAATTTGGACAAAATGATGCGATTTACCAAGAATGGA
ATGTTCAGAAAAAATTTTAATTCGGATGTTCGTCA
Found at i:13419 original size:216 final size:217
Alignment explanation
Indices: 12954--13883 Score: 951
Period size: 216 Copynumber: 4.4 Consensus size: 217
12944 ATGTTCGTCA
* * *
12954 AAGAACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGA-CAAATAGTTGTTT
1 AAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAA-AATTGTTT
* * * * * **
13018 ACAAAATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTGAAT-TTTTGAAAAATT
65 ACAAAATGACAAACTAATTGGACAAAATGATGCGATTTCTCAAGCATGGAATGTTCAGAAAAATT
* * *
13082 GCTTGAA-G---GG----TCTT-ACATACTTTAAGGAACCTAAGC-TATAAAAGAACTAGTAAAA
130 GCTCGAAGGAATGGATCATCTTGA-ATACTTTAAGGAACCGAA-CTTATAAAAGAACTCGTAAAA
* * **
13137 GTTTCACAAGTTCGGAAGTTCGTTC
193 GTTTAACAAGTTCAGAAGTTCGGCC
* * ** *
13162 AAGAACCAATTGATAAA-ATATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAAATTGTTT
1 AAGAACCAATAGACAAACA-ATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTT
* * * *
13226 ACAAAACGAGAAAC-AATTTGGGCAAAATGATGCGATTTAC-CAAGCGTGGAATGTTCAG-AAAA
65 ACAAAATGACAAACTAA-TTGGACAAAATGATGCGATTT-CTCAAGCATGGAATGTTCAGAAAAA
*
13288 TTGCTCGAAGGAATGGATCATCTTGAATACTATAAGGAACCGAACTTATAAAAGAACTCGTAAAA
128 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACTCGTAAAA
* *
13353 GTTTGATAAGTTCAGAAGTTCGGCC
193 GTTTAACAAGTTCAGAAGTTCGGCC
* * *
13378 AAGGACCAATAGACAAACAATTCTCACCAAAATATGTTTTTAATTCAAAGA-CAAAAAGTG-TTA
1 AAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTA
* * * * * *
13441 CAAAATGACAAACTATTTGTACCAAATGATGCGATTTC-CTGAGAATGGAATGATCA-AACAAAT
66 CAAAATGACAAACTAATTGGACAAAATGATGCGATTTCTC-AAGCATGGAATGTTCAGAA-AAAT
* * * * * * *
13504 T-TTCGAACGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA-
129 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACTCGTAAAAG
* * * * *
13567 TTTTACCAGTTCGGATGTTCGTCC
194 TTTAACAAGTTCAGAAGTTCGGCC
* * * *
13591 AAGAACC-ATGAGACAAAC-ATTGTCACCAAAATAAGTTTTTAATTCAAATACAAAAAAGTAGTT
1 AAGAACCAAT-AGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAA-TTGTT
* ** * **
13654 TAAAAAATGACAAACTAATTGGACAAAATGATATGATTTCTCAACCATGGACCGTTC-GAAAAAT
64 TACAAAATGACAAACTAATTGGACAAAATGATGCGATTTCTCAAGCATGGAATGTTCAGAAAAAT
* *
13718 TGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
129 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACTCGTAAAAG
* *
13783 TTTAACAAGTTCAGATGTTCGGAC
194 TTTAACAAGTTCAGAAGTTCGGCC
* * **
13807 AAGGACCAATAGTCAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAGAAGGTAT-TT
1 AAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACCA-AAAAT-TGTT
13870 TACAAAATGACAAA
64 TACAAAATGACAAA
13884 TTAAAT
Statistics
Matches: 594, Mismatches: 96, Indels: 56
0.80 0.13 0.08
Matches are distributed among these distances:
207 3 0.01
208 103 0.17
209 9 0.02
212 33 0.06
213 39 0.07
214 105 0.18
215 116 0.20
216 150 0.25
217 36 0.06
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (217 bp):
AAGAACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTA
CAAAATGACAAACTAATTGGACAAAATGATGCGATTTCTCAAGCATGGAATGTTCAGAAAAATTG
CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAACTTATAAAAGAACTCGTAAAAGTT
TAACAAGTTCAGAAGTTCGGCC
Found at i:13758 original size:429 final size:422
Alignment explanation
Indices: 12958--13883 Score: 1145
Period size: 429 Copynumber: 2.2 Consensus size: 422
12948 TCGTCAAAGA
* * *
12958 ACCAAGAGACAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACAAATAGTTGTTTACAAA
1 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTG-TTACAAA
** * ** **
13023 ATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGCTTTGAATTTTTGAAAAATTGCTTGA
65 ATGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGAATGGAATGATCAAAAAATT-CTTGA
13088 AGGGTCTTACATACTTTAAGGAACCTAAGCTATAAAAGAACTAGTAAAAGTTTCACAAGTTCGGA
129 AGGGTCTTACATACTTTAAGGAACCTAAGCTATAAAAGAACTAGTAAAAGTTTCACAAGTTCGGA
* * * ** *
13153 AGTTCGTTCAAGAACCAATTGATAAAATATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAA
194 AGTTCGTCCAAGAACCAATTGAGAAAACATTCTCACCAAAATAAGTTTTTAACTCAAAGACAAAA
* * * * * * * *
13218 AATTGTTTACAAAACGAGAAACAATTTGGGCAAAATGATGCGATTTACCAAGCGTGGAATGTTCA
259 AATAGTTTAAAAAACGACAAACAATTTGGACAAAATGATACGATTTACCAACCATGGAACGTTCA
*
13283 GAAAATTGCTCGAAGGAATGGATCATCTTGAATACTATAAGGAACCGAACTTATAAAAGAACTCG
324 GAAAATTGCTCAAAGGAATGGATCATCTTGAATACTATAAGGAACCGAACTTATAAAAGAACTCG
* * *
13348 TAAAAGTTTGATAAGTTCAGAAGTTCGGCCAAGG
389 TAAAAGTTTAACAAGTTCAGAAGTTCGGACAAGG
*
13382 ACCAATAGACAAACAATTCTCACCAAAATATGTTTTTAATTCAAAGACAAAAAG-TGTTACAAAA
1 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTACAAAA
*
13446 TGACAAACT-ATTTGTACCAAATGATGCGATTTC-CTGAGAATGGAATGATCAAACAAATT-TTC
66 TGACAAACTAATTGGT-CCAAATGATGCGATTTCTC-GAGAATGGAATGATCAAA-AAATTCTT-
* * * *
13508 GAACGAATGCATCGTTTTGA-ATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAA-TTTT
127 GAA-G---G----GTCTT-ACATACTTTAAGGAACCTAAGCTATAAAAGAACTAGTAAAAGTTTC
* * * *
13571 ACCAGTTCGGATGTTCGTCCAAGAACC-A-TGAGACAAACATTGTCACCAAAATAAGTTTTTAAT
183 ACAAGTTCGGAAGTTCGTCCAAGAACCAATTGAGA-AAACATTCTCACCAAAATAAGTTTTTAAC
* * *
13634 TCAAATACAAAAAAGTAGTTTAAAAAATGACAAACTAA-TTGGACAAAATGATATGATTT-CTCA
247 TCAAAGACAAAAAA-TAGTTTAAAAAACGACAAAC-AATTTGGACAAAATGATACGATTTAC-CA
* *
13697 ACCATGGACCGTTC-GAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAA
309 ACCATGGAACGTTCAG-AAAATTGCTCAAAGGAATGGATCATCTTGAATACTATAAGGAACCGAA
* *
13761 GTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCAGATGTTCGGACAAGG
373 CTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCAGAAGTTCGGACAAGG
* * * *
13811 ACCAATAGTCAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAGAAGGTATTTTACAAA
1 ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGT-TGTTACAAA
13876 ATGACAAA
65 ATGACAAA
13884 TTAAAT
Statistics
Matches: 432, Mismatches: 50, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
421 8 0.02
422 48 0.11
423 8 0.02
424 50 0.12
426 1 0.00
427 4 0.01
428 39 0.09
429 214 0.50
430 43 0.10
431 17 0.04
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (422 bp):
ACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTACAAAA
TGACAAACTAATTGGTCCAAATGATGCGATTTCTCGAGAATGGAATGATCAAAAAATTCTTGAAG
GGTCTTACATACTTTAAGGAACCTAAGCTATAAAAGAACTAGTAAAAGTTTCACAAGTTCGGAAG
TTCGTCCAAGAACCAATTGAGAAAACATTCTCACCAAAATAAGTTTTTAACTCAAAGACAAAAAA
TAGTTTAAAAAACGACAAACAATTTGGACAAAATGATACGATTTACCAACCATGGAACGTTCAGA
AAATTGCTCAAAGGAATGGATCATCTTGAATACTATAAGGAACCGAACTTATAAAAGAACTCGTA
AAAGTTTAACAAGTTCAGAAGTTCGGACAAGG
Done.