genome.fa.s12141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012141.1 Kokia drynarioides strain JFW-HI SEQ_127140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  461594

Tables:   1   2   

This is table  1  of  2  ( 127 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437--505	15	4.6	15	78	10	70	14	11	28	44	1.80
538--580	17	2.5	17	100	0	86	48	4	0	46	1.22
538--610	17	4.4	16	88	8	78	50	5	0	43	1.25
570--623	17	3.3	17	84	7	67	53	9	0	37	1.33
2617--2655	2	20.0	2	89	5	62	51	0	48	0	1.00
2948--2981	16	2.3	14	90	10	50	47	0	2	50	1.16
3674--3717	6	7.3	6	100	0	88	15	0	68	15	1.22
6962--7466	278	1.8	279	97	0	958	35	14	19	30	1.92
8040--8082	21	2.0	21	86	0	59	72	13	6	6	1.27
8219--8257	15	2.7	16	77	22	50	76	0	0	23	0.78
8217--8262	21	2.2	21	88	0	65	73	0	0	26	0.83
38664--38725	30	2.1	30	84	0	79	37	12	9	40	1.77
41488--41995	252	2.0	251	96	0	944	25	15	23	36	1.93
46906--47249	172	2.0	172	100	0	688	30	12	19	37	1.89
49876--49901	12	2.2	12	100	0	52	46	0	7	46	1.31
54990--55023	16	2.1	17	88	5	52	35	2	5	55	1.39
69104--69168	26	2.7	24	75	13	71	53	3	0	43	1.16
73730--73762	2	16.5	2	100	0	66	51	0	0	48	1.00
78580--78656	39	2.0	39	89	2	120	29	6	7	55	1.53
80580--80608	15	2.0	15	93	6	51	41	0	3	55	1.17
87622--87647	6	4.3	6	100	0	52	65	15	19	0	1.27
93223--93256	2	17.0	2	93	0	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96273--96374	44	2.2	45	88	11	147	55	1	3	38	1.29
96529--96607	31	2.5	31	79	4	97	53	3	6	36	1.45
96923--96968	20	2.3	20	82	13	60	28	0	4	67	1.10
103965--103994	2	15.0	2	100	0	60	50	0	0	50	1.00
121212--121246	17	2.0	18	88	5	54	17	14	2	65	1.38
122654--122777	23	5.4	23	87	7	155	45	20	21	12	1.84
123633--123676	18	2.6	17	86	10	63	4	31	2	61	1.28
125669--125868	59	3.4	57	79	8	181	39	6	25	29	1.81
125822--125981	30	5.5	28	78	13	148	34	1	25	38	1.64
125837--125981	59	2.4	58	85	6	184	34	1	25	38	1.65
127651--127734	6	14.7	6	81	9	104	54	2	0	42	1.13
127651--127734	17	4.9	17	86	2	98	54	2	0	42	1.13
127651--127734	23	3.7	23	82	6	109	54	2	0	42	1.13
127647--127735	11	8.4	11	74	18	55	57	2	0	40	1.11
128064--129076	206	4.9	206	83	3	1209	23	22	18	35	1.95
129147--129278	39	3.4	39	76	0	129	25	18	28	27	1.98
129147--129321	78	2.2	78	79	4	174	25	18	28	27	1.98
129690--129913	50	4.5	50	68	13	138	13	22	21	42	1.87
129594--129810	100	2.2	99	79	5	222	14	27	20	37	1.91
129605--130080	150	3.2	150	84	2	616	14	24	19	40	1.89
136388--136548	59	2.7	57	79	8	171	41	6	20	31	1.78
136507--136715	29	7.1	28	76	10	195	34	2	26	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136507--136715	59	3.6	57	80	8	224	34	2	26	35	1.72
137869--137908	3	13.0	3	84	5	53	37	0	2	60	1.11
137869--137917	15	3.2	15	88	2	53	36	2	4	57	1.30
138599--138627	14	2.0	15	93	6	51	20	6	20	51	1.70
138653--138708	6	9.7	6	78	7	62	57	3	0	39	1.16
138640--138709	29	2.4	28	86	9	95	57	2	1	38	1.23
138653--138708	17	3.2	17	84	2	76	57	3	0	39	1.16
143516--143551	17	2.0	19	89	10	58	58	5	0	36	1.22
144688--144741	16	3.6	15	76	20	51	62	1	0	35	1.06
144719--144759	21	2.0	21	85	9	57	60	0	0	39	0.96
148210--148309	36	2.8	36	80	8	114	44	6	17	33	1.73
149016--149049	16	2.2	16	89	5	52	55	2	0	41	1.15
160495--160522	2	14.0	2	100	0	56	50	0	0	50	1.00
166573--166617	23	2.0	21	91	8	72	55	0	4	40	1.20
166567--166626	20	2.9	22	81	13	74	60	0	3	36	1.14
166610--166666	23	2.5	23	85	0	78	56	0	0	43	0.99
166717--166776	19	3.2	18	81	9	59	30	3	1	65	1.19
166742--166776	17	1.9	19	88	11	56	25	0	2	71	1.00
166771--166816	25	2.0	23	87	12	67	50	2	0	47	1.13
167746--167791	23	2.0	23	95	0	83	39	6	8	45	1.61
171656--171694	20	2.0	20	85	14	55	25	7	5	61	1.44
181630--181699	32	2.3	30	83	16	90	62	2	0	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185719--185787	30	2.2	31	87	5	95	24	13	8	53	1.67
185735--185805	29	2.4	30	83	6	83	30	12	8	47	1.71
186055--186132	27	2.8	28	79	13	90	55	7	7	29	1.56
205823--205848	13	2.0	13	100	0	52	15	0	0	84	0.62
218489--218548	31	1.9	32	82	3	77	48	5	1	45	1.34
220384--220443	26	2.4	23	77	20	59	21	11	0	66	1.23
228666--228690	2	12.5	2	100	0	50	0	52	0	48	1.00
263952--264006	18	3.1	18	80	12	60	32	1	0	65	1.03
265302--265368	33	2.0	33	97	0	125	37	25	5	31	1.80
267356--267418	29	2.0	33	82	11	80	33	6	17	42	1.74
267571--267627	29	1.9	30	89	3	89	56	10	1	31	1.44
285168--285225	28	2.1	28	93	0	98	18	25	6	48	1.73
287730--287786	24	2.4	24	85	5	71	14	26	36	22	1.92
300716--300751	17	2.1	17	100	0	72	58	5	11	25	1.54
304365--304511	58	2.5	56	82	7	152	25	10	10	53	1.68
304711--304788	32	2.4	33	89	2	113	52	12	10	24	1.70
305519--305583	31	2.1	32	88	2	96	36	3	1	58	1.23
307409--307847	59	7.4	58	76	9	153	38	3	25	32	1.72
307576--307668	29	3.2	29	68	7	80	36	2	29	32	1.69
307596--307700	29	3.6	29	67	5	77	40	2	24	31	1.70
307580--307792	58	3.6	58	83	3	214	38	2	26	33	1.69
307619--307727	29	3.8	28	69	6	92	33	2	28	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307683--307862	29	6.2	29	70	12	118	36	2	25	35	1.69
307752--307883	30	4.5	29	74	11	110	36	1	25	37	1.65
307742--307882	58	2.4	58	81	4	158	39	1	24	35	1.64
308580--308619	12	3.4	12	86	3	55	27	2	5	65	1.27
309345--309405	17	3.6	16	78	8	59	49	0	4	45	1.23
310062--310133	20	3.7	18	73	14	63	63	2	2	30	1.22
319228--319288	22	2.8	22	85	7	72	70	3	11	14	1.28
319254--319283	15	1.9	16	93	6	53	70	0	13	16	1.18
320089--320131	19	2.3	19	84	8	52	55	6	0	37	1.27
339422--339478	28	2.0	28	100	0	114	17	14	14	54	1.71
341351--341411	31	2.0	31	86	0	86	34	11	14	39	1.82
341812--341860	20	2.3	20	82	6	62	51	2	10	36	1.48
344282--344778	249	2.0	247	95	1	888	43	11	11	33	1.78
347277--347329	9	6.8	9	71	28	50	52	0	0	47	1.00
347278--347319	20	2.0	22	90	9	70	52	0	0	47	1.00
347282--347353	29	2.4	30	90	6	112	54	0	2	43	1.15
350283--350356	30	2.5	29	80	10	78	39	2	4	54	1.34
355684--355720	18	2.1	18	90	5	58	70	0	0	29	0.88
356131--356160	7	4.3	7	95	0	51	46	3	0	50	1.18
382273--382315	3	14.3	3	100	0	86	67	0	0	32	0.91
389727--389757	2	15.5	2	93	0	53	0	45	0	54	0.99
391350--391444	46	2.1	46	93	0	163	33	11	20	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400653--400889	84	2.8	86	79	7	252	50	6	14	28	1.67
404387--404421	6	5.8	6	100	0	70	17	0	51	31	1.45
408804--408847	5	8.8	5	100	0	88	40	18	0	40	1.50
408856--409405	234	2.3	239	82	7	639	37	8	7	46	1.64
409534--409572	2	20.0	2	84	5	53	46	2	0	51	1.14
412111--412140	14	2.1	14	93	0	51	90	0	10	0	0.47
436502--436553	2	26.0	2	100	0	104	50	0	0	50	1.00
439792--439840	17	2.8	17	84	6	53	71	0	8	20	1.11
444521--444549	2	14.5	2	100	0	58	48	0	0	51	1.00
448869--449007	31	4.5	31	76	9	133	23	15	12	48	1.79

Tables:   1   2