genome.fa.s12143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012143.1 Kokia drynarioides strain JFW-HI SEQ_127142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183158

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2493--2621	63	2.0	64	93	1	224	55	10	9	24	1.64
3423--3452	11	2.9	10	90	9	51	13	10	26	50	1.73
10636--10682	23	2.0	23	95	0	85	38	14	17	29	1.89
15478--15502	6	4.2	6	100	0	50	32	0	16	52	1.44
20615--20669	24	2.3	24	100	0	110	20	27	7	45	1.77
26495--26519	6	4.2	6	100	0	50	0	20	32	48	1.50
38107--38135	8	3.8	8	95	4	51	0	6	0	93	0.36
42265--42412	69	2.2	68	91	3	235	40	14	6	38	1.72
44443--44483	21	2.0	21	85	9	57	31	4	21	41	1.74
44657--44712	21	2.6	21	82	2	58	41	23	0	35	1.55
45105--45140	18	2.0	18	88	0	54	61	0	0	38	0.96
47304--47348	7	6.4	7	100	0	90	0	44	0	55	0.99
54039--54304	134	2.0	133	90	2	417	29	10	18	41	1.84
58344--58369	13	2.0	13	100	0	52	92	0	7	0	0.39
58909--58952	18	2.4	18	81	7	54	29	4	4	61	1.36
64553--64589	18	2.1	18	89	0	56	48	0	27	24	1.51
68204--68254	20	2.6	21	76	14	56	52	0	1	45	1.12
68437--68611	95	1.9	93	89	2	269	44	9	5	40	1.59
68812--68888	40	2.0	37	87	7	109	55	3	0	40	1.18
73511--73552	15	2.5	17	81	14	52	38	0	0	61	0.96
73510--73550	16	2.5	17	76	11	50	36	0	0	63	0.95
75692--75733	15	2.6	16	88	7	59	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76670--76720	25	2.0	25	88	7	75	64	1	1	31	1.15
76658--76719	8	7.6	8	75	8	54	64	1	1	32	1.13
77668--77734	31	2.2	31	81	10	75	40	11	11	35	1.79
78122--78330	105	2.0	105	99	0	409	23	23	11	41	1.87
80007--80205	99	2.0	99	100	0	398	34	19	24	22	1.96
82438--82554	49	2.5	47	79	10	114	61	2	1	34	1.20
82972--83022	9	5.6	9	73	13	50	31	1	1	64	1.15
84604--84671	23	3.0	23	71	16	61	57	0	4	38	1.19
85606--85656	12	4.1	12	85	12	59	56	0	1	41	1.10
85620--85657	2	20.0	2	89	10	62	52	0	0	47	1.00
87293--87330	17	2.2	17	90	4	58	50	0	0	50	1.00
87291--87335	18	2.6	17	83	10	56	53	0	2	44	1.13
88157--88365	110	1.9	110	92	0	355	33	16	19	31	1.94
88396--88450	21	2.6	21	82	0	74	34	18	18	29	1.94
89133--89475	53	6.5	53	87	0	409	34	20	17	28	1.95
89133--89475	158	2.2	159	84	1	438	34	20	17	28	1.95
90100--90249	75	2.0	75	98	0	291	43	14	15	26	1.85
91927--92082	30	5.3	29	78	9	138	34	26	2	36	1.70
91927--92124	59	3.4	58	78	8	193	36	23	2	37	1.68
91927--92188	29	8.9	30	77	7	180	35	23	2	38	1.69
91933--92178	59	4.2	58	77	8	171	36	23	2	37	1.66
97220--97247	14	2.0	14	100	0	56	14	14	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101537--101601	27	2.4	27	100	0	130	44	3	10	41	1.55
101814--101942	69	1.9	69	83	0	168	42	13	7	35	1.74
108652--108763	42	2.7	42	81	6	129	45	21	8	25	1.79
110383--110407	4	6.2	4	100	0	50	24	24	0	52	1.48
121440--121469	3	10.0	3	100	0	60	33	0	33	33	1.58
123237--123268	15	2.1	15	100	0	64	40	6	0	53	1.26
132668--132710	2	21.5	2	100	0	86	48	0	0	51	1.00
140521--140633	57	2.0	57	96	0	208	24	28	24	22	1.99
142367--142395	11	2.6	11	100	0	58	0	0	6	93	0.36
142366--142403	19	2.0	19	85	10	51	2	2	7	86	0.74
143935--144360	213	2.0	212	97	0	807	29	18	12	39	1.88
147247--147316	32	2.2	32	100	0	140	52	5	17	24	1.65
151794--151836	22	2.0	22	100	0	86	37	6	23	32	1.82
154328--154353	2	13.0	2	100	0	52	0	0	50	50	1.00
161083--161174	44	2.1	44	100	0	184	39	32	13	15	1.85
180691--180817	43	3.0	43	84	7	161	28	24	18	28	1.98

Tables:   1

The End!