Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012147.1 Kokia drynarioides strain JFW-HI SEQ_127146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100269

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
189--302
56
2.0
56
89
3
176
14
11
28
45
1.79
4081--4123
18
2.4
18
100
0
86
37
30
9
23
1.86
14493--14520
6
4.7
6
100
0
56
53
0
0
46
1.00
19297--19346
21
2.4
21
86
0
73
34
42
8
16
1.77
21139--21566
39
11.0
39
81
3
416
28
17
18
35
1.94
21207--21563
194
1.8
194
86
2
511
28
16
18
36
1.93
21682--21864
72
2.5
72
80
0
213
24
29
16
29
1.97
22470--22496
14
1.9
14
100
0
54
77
0
0
22
0.76
22695--22786
32
2.9
32
93
0
157
35
25
14
25
1.93
24396--24475
15
4.8
16
74
18
56
25
1
2
71
1.06
24402--24488
39
2.3
38
78
15
90
25
2
2
70
1.11
27139--27181
19
2.3
19
84
11
54
39
0
0
60
0.97
27139--27186
13
3.8
13
76
20
57
39
0
0
60
0.97
34979--35012
17
1.9
18
88
5
52
50
0
0
50
1.00
35658--35691
17
1.9
18
88
5
52
50
0
0
50
1.00
38325--38391
25
2.8
23
78
17
66
68
5
0
25
1.12
46882--46926
7
6.6
7
84
5
56
28
2
2
66
1.15
46868--46927
27
2.1
29
81
6
70
28
6
3
61
1.37
49673--49699
7
3.9
7
100
0
54
14
11
74
0
1.08
50200--50258
31
1.9
31
100
0
118
18
25
20
35
1.95
50568--50612
19
2.4
19
82
17
58
44
4
4
46
1.43
59411--59585
96
1.8
96
84
7
239
39
14
17
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59853--59941
30
3.1
28
72
15
74
44
7
20
26
1.78
59910--60164
58
4.3
58
75
11
200
32
5
27
34
1.80
59910--60164
59
4.3
58
76
12
211
32
5
27
34
1.80
59963--60167
29
6.9
29
71
7
128
32
4
28
34
1.78
60048--60158
30
3.8
28
76
8
89
33
5
27
34
1.80
61988--62045
27
2.1
29
87
6
84
53
12
0
34
1.38
62348--62954
205
3.0
205
85
3
780
23
22
18
35
1.95
62360--62989
200
3.1
199
85
2
740
23
22
18
35
1.95
62852--63058
115
1.8
114
90
5
337
24
22
17
35
1.95
78365--78425
28
2.1
29
84
3
79
26
6
29
37
1.81
78527--78728
29
6.8
29
79
7
201
33
3
28
34
1.76
78527--78728
30
6.8
29
79
11
205
33
3
28
34
1.76
78528--78728
59
3.4
58
82
7
235
33
3
27
34
1.76
83917--84068
82
1.9
82
90
0
241
30
25
17
26
1.97
84309--84348
20
2.0
20
100
0
80
30
15
10
45
1.78
88003--88044
19
2.2
19
87
8
59
26
4
0
69
1.08
90379--90593
107
2.0
107
99
0
421
45
17
9
27
1.79
95064--95356
24
12.2
24
82
0
253
35
17
27
19
1.95
95075--95361
48
6.0
48
83
0
313
34
17
28
19
1.95
95423--95483
27
2.2
28
97
2
115
40
4
16
37
1.70
96075--96123
21
2.3
21
85
0
62
30
20
20
28
1.98

Tables:   1

The End!