Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001215.1 Kokia drynarioides strain JFW-HI SEQ_112566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4712
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33


Found at i:847 original size:50 final size:50

Alignment explanation


    Indices: 793--887  Score: 122
    Period size: 50  Copynumber: 1.9  Consensus size: 50

        783 TAATTTAAGC

                       *           *                            
        793 ATGTTCAATAATTTTAA-AAAAATGTTATGACCA-AAGAATTTGAAAACACT
          1 ATGTTCAAT-ACTTTAAGAAAAAAGTTATGA-CAGAAGAATTTGAAAACACT

                     *                    *              
        843 ATGTTCAATGCTTTAAGAAAAAAGTTATGATAGAAGAATTTGAAA
          1 ATGTTCAATACTTTAAGAAAAAAGTTATGACAGAAGAATTTGAAA

        888 TGACAAATAT


Statistics
Matches: 39,  Mismatches: 4, Indels: 4
        0.83            0.09        0.09

Matches are distributed among these distances:
  49    6  0.15
  50   33  0.85

ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32


Consensus pattern (50 bp):   
ATGTTCAATACTTTAAGAAAAAAGTTATGACAGAAGAATTTGAAAACACT
Done.