Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012156.1 Kokia drynarioides strain JFW-HI SEQ_127157, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14921
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32

Warning! 53 characters in sequence are not A, C, G, or T


Found at i:1610 original size:19 final size:19

Alignment explanation


    Indices: 1586--1623  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1576 TGATGATACT

                       *       
       1586 ATATGACCCAATAATCTAA
          1 ATATGACCCAAGAATCTAA

                               
       1605 ATATGACCCAAGAATCTAA
          1 ATATGACCCAAGAATCTAA

       1624 CTTCTCGAAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.47, C:0.21, G:0.08, T:0.24


Consensus pattern (19 bp):   
ATATGACCCAAGAATCTAA
Done.