Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001216.1 Kokia drynarioides strain JFW-HI SEQ_112567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2225
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36


Found at i:281 original size:46 final size:46

Alignment explanation


    Indices: 209--311  Score: 170
    Period size: 46  Copynumber: 2.2  Consensus size: 46

        199 CAACAAAATA

                *                            *            
        209 TCATCCTTATCACTATACGTGTCAGCTTCAAAAGGAAGAAGAGATG
          1 TCATACTTATCACTATACGTGTCAGCTTCAAAAAGAAGAAGAGATG

                                                *         
        255 TCATACTTATCACTATACGTGTCAGCTTCAAAAAGATGAAGAGATG
          1 TCATACTTATCACTATACGTGTCAGCTTCAAAAAGAAGAAGAGATG

                *      
        301 TCATGCTTATC
          1 TCATACTTATC

        312 CCGGCACTGT


Statistics
Matches: 53,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  46   53  1.00

ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29


Consensus pattern (46 bp):   
TCATACTTATCACTATACGTGTCAGCTTCAAAAAGAAGAAGAGATG

Found at i:1972 original size:46 final size:46

Alignment explanation


    Indices: 1915--2017  Score: 170
    Period size: 46  Copynumber: 2.2  Consensus size: 46

       1905 ACAGTGCCGG

                                              *           
       1915 GATAAGCATGACATCTCTTCATCTTTTTGAAGCTGACACGTATAGT
          1 GATAAGCATGACATCTCTTCATCTTTTTGAAGCTAACACGTATAGT

                  *             *                         
       1961 GATAAGTATGACATCTCTTCTTCTTTTTGAAGCTAACACGTATAGT
          1 GATAAGCATGACATCTCTTCATCTTTTTGAAGCTAACACGTATAGT

                  *    
       2007 GATAAGGATGA
          1 GATAAGCATGA

       2018 TATTTTGTTG


Statistics
Matches: 53,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  46   53  1.00

ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Consensus pattern (46 bp):   
GATAAGCATGACATCTCTTCATCTTTTTGAAGCTAACACGTATAGT
Done.