Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012164.1 Kokia drynarioides strain JFW-HI SEQ_127165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3228
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31


Found at i:1380 original size:40 final size:40

Alignment explanation


    Indices: 1325--1406  Score: 164
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1315 TAGGAAAGTG

                                                    
       1325 ATAGTTTATGCCTCCCGACAGTTGAAGCCGCATGAGAGGA
          1 ATAGTTTATGCCTCCCGACAGTTGAAGCCGCATGAGAGGA

                                                    
       1365 ATAGTTTATGCCTCCCGACAGTTGAAGCCGCATGAGAGGA
          1 ATAGTTTATGCCTCCCGACAGTTGAAGCCGCATGAGAGGA

              
       1405 AT
          1 AT

       1407 TATCCAACTC


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   42  1.00

ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23


Consensus pattern (40 bp):   
ATAGTTTATGCCTCCCGACAGTTGAAGCCGCATGAGAGGA
Done.