genome.fa.s12177.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012177.1 Kokia drynarioides strain JFW-HI SEQ_127178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158829

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11701--11741	21	2.0	21	90	0	64	14	53	7	24	1.66
15220--15287	22	3.2	21	80	10	77	10	8	13	67	1.41
15230--15290	19	3.1	19	80	13	77	13	6	9	70	1.33
15333--15462	12	11.2	12	71	6	106	11	2	14	71	1.24
15333--15462	24	5.6	24	80	7	126	11	2	14	71	1.24
15319--15400	36	2.3	36	82	0	101	9	3	14	71	1.25
15408--15478	23	3.2	22	78	15	83	14	1	15	69	1.27
18064--18256	96	2.0	96	90	0	305	32	17	29	20	1.95
19897--19941	23	2.0	23	91	8	74	64	13	2	20	1.38
21307--21374	17	3.9	17	81	9	75	60	1	0	38	1.06
29288--29330	15	2.7	16	89	7	61	67	0	0	32	0.91
29514--29551	19	2.1	19	85	5	51	55	10	2	31	1.48
44195--44232	18	2.0	20	85	10	53	31	0	5	63	1.17
44844--44876	17	1.9	18	88	11	52	48	0	6	45	1.27
66211--66255	23	2.0	23	90	0	72	24	22	8	44	1.81
68715--68781	21	3.4	18	67	21	53	49	4	11	34	1.60
68724--68791	21	3.2	21	66	15	59	47	4	11	36	1.60
68824--68927	39	2.7	39	81	0	136	41	9	2	46	1.51
70101--70142	13	3.3	13	90	3	59	26	4	14	54	1.59
70789--70821	15	2.3	15	89	5	50	21	6	18	54	1.64
73292--73358	22	3.1	21	83	8	89	37	0	1	61	1.05
73295--73365	25	3.0	24	80	13	69	38	0	1	60	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73523--73554	5	6.4	5	92	0	55	78	3	18	0	0.89
74989--75013	2	12.5	2	100	0	50	52	0	0	48	1.00
77469--77506	18	2.1	18	90	9	60	26	10	13	50	1.73
77551--77595	23	2.0	23	86	0	63	35	17	11	35	1.86
80901--80925	2	12.5	2	100	0	50	48	0	0	52	1.00
85420--85451	6	5.3	6	92	0	55	15	0	18	65	1.27
85910--85951	14	3.4	12	81	15	50	52	0	0	47	1.00
86101--86142	13	2.9	14	80	13	50	54	0	0	45	0.99
86105--86141	16	2.3	16	86	13	58	59	0	0	40	0.97
86132--86172	21	2.0	20	90	4	64	51	4	0	43	1.23
88052--88087	18	2.1	18	89	5	56	41	0	25	33	1.55
90007--90069	30	2.1	30	85	11	85	28	7	25	38	1.84
90007--90072	29	2.2	30	86	7	91	28	7	27	36	1.84
90055--90318	30	8.9	30	80	6	261	35	0	24	39	1.59
90085--90318	59	3.9	59	78	9	226	35	0	24	39	1.59
91340--91372	12	2.8	12	95	0	57	48	0	0	51	1.00
92115--92209	6	16.8	6	67	20	53	54	4	0	41	1.20
92114--92209	17	5.8	16	73	15	79	55	4	0	40	1.19
92115--92197	40	2.1	39	82	10	98	54	4	0	40	1.22
92565--92602	18	2.1	18	90	5	58	42	5	0	52	1.24
101459--101912	241	1.9	240	91	4	752	32	15	16	36	1.89
118213--118238	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120157--120215	29	2.0	29	90	6	93	35	23	18	22	1.96
125267--125306	12	3.3	12	96	0	71	0	60	0	40	0.97
127520--127732	112	1.9	112	88	1	320	30	13	15	40	1.85
127883--127960	32	2.4	34	83	12	92	41	7	6	44	1.58
133069--133112	23	1.9	23	81	9	54	20	9	2	68	1.28
133595--133648	20	2.7	20	79	0	63	22	25	40	11	1.87
140155--140200	17	2.7	18	80	16	53	36	0	0	63	0.95
141719--142516	414	1.9	413	89	2	1228	32	18	12	36	1.89
144448--144492	20	2.2	21	92	4	74	60	6	2	31	1.35
146117--146141	12	2.1	12	100	0	50	52	16	24	8	1.70
148969--149012	22	2.0	21	86	8	61	40	22	2	34	1.67
150268--150301	10	3.3	10	87	4	50	2	11	0	85	0.71
149350--151892	641	3.9	654	88	7	3503	29	11	17	40	1.85
151561--151588	5	5.6	5	100	0	56	0	17	0	82	0.68
153442--153803	179	2.0	179	97	0	688	27	7	23	41	1.81
153898--153952	27	2.0	27	100	0	110	25	7	25	41	1.81

Tables:   1

The End!