Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001218.1 Kokia drynarioides strain JFW-HI SEQ_112571, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35


Found at i:1057 original size:2 final size:2

Alignment explanation


    Indices: 1050--1074  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1040 ATCTATTTTA

                                                 
       1050 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       1075 CTTAAAATAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:1106 original size:19 final size:20

Alignment explanation


    Indices: 1078--1120  Score: 61
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       1068 ATATATACTT

                          *     
       1078 AAAATAATA-TAAATTATTA
          1 AAAATAATATTAAAATATTA

                 *              
       1097 AAAATTATATTAAAATATTA
          1 AAAATAATATTAAAATATTA

                
       1117 AAAA
          1 AAAA

       1121 AAATTAGCCC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  19    8  0.38
  20   13  0.62

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (20 bp):   
AAAATAATATTAAAATATTA

Done.