Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012188.1 Kokia drynarioides strain JFW-HI SEQ_127189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123627
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Warning! 51 characters in sequence are not A, C, G, or T
Found at i:2967 original size:19 final size:17
Alignment explanation
Indices: 2944--2992 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
2934 TTTAATATTT
2944 TAAATATAAATAAATTA
1 TAAATATAAATAAATTA
* *
2961 TGAAAATTTAAATTAATTA
1 T--AAATATAAATAAATTA
2980 TAAATA-AAATAAA
1 TAAATATAAATAAA
2993 AATAGAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
16 6 0.23
17 5 0.19
19 15 0.58
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
TAAATATAAATAAATTA
Found at i:5039 original size:41 final size:40
Alignment explanation
Indices: 4982--5060 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 40
4972 TAAACGTTCA
4982 CAAAAGATAAGTGTAGCTAAAATATCCAAAATATCGAGTCG
1 CAAAAGATAAGTGTAGCTAAAATATCCAAAATAT-GAGTCG
** * *
5023 CAAAAGATGGGTGTAGCTAAAATATTCGAAATATGAGT
1 CAAAAGATAAGTGTAGCTAAAATATCCAAAATATGAGT
5061 ATCTGAGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 4 0.12
41 30 0.88
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAAAGATAAGTGTAGCTAAAATATCCAAAATATGAGTCG
Found at i:7230 original size:17 final size:18
Alignment explanation
Indices: 7208--7241 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7198 GAGAAAGAGG
7208 ATGG-AAAGAAAAAAAGA
1 ATGGAAAAGAAAAAAAGA
*
7225 ATGGAAAAGAAAGAAAG
1 ATGGAAAAGAAAAAAAG
7242 GAAAAAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (18 bp):
ATGGAAAAGAAAAAAAGA
Found at i:7240 original size:26 final size:27
Alignment explanation
Indices: 7211--7274 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 27
7201 AAAGAGGATG
7211 GAAAGAAAAAAAGAATGGA-AAAGAAA
1 GAAAGAAAAAAAGAATGGAGAAAGAAA
* *
7237 GAAAG-GAAAAAGAATGTAGAAAGAAA
1 GAAAGAAAAAAAGAATGGAGAAAGAAA
7263 -AAAGAATAAAAA
1 GAAAGAA-AAAAA
7275 ATAAATGGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 15 0.47
26 12 0.38
27 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (27 bp):
GAAAGAAAAAAAGAATGGAGAAAGAAA
Found at i:10565 original size:33 final size:33
Alignment explanation
Indices: 10523--10588 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
10513 CATCTTGCAA
10523 AGGATGGTCATATCTTTACCTCATCCTCTTTCT
1 AGGATGGTCATATCTTTACCTCATCCTCTTTCT
10556 AGGATGGTCATATCTTTACCTCATCCTCTTTCT
1 AGGATGGTCATATCTTTACCTCATCCTCTTTCT
10589 TTCTTTCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (33 bp):
AGGATGGTCATATCTTTACCTCATCCTCTTTCT
Found at i:10591 original size:4 final size:4
Alignment explanation
Indices: 10582--10606 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
10572 TACCTCATCC
10582 TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
10607 TTAATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:17378 original size:19 final size:21
Alignment explanation
Indices: 17333--17379 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
17323 GAAAAATAGT
*
17333 TTATTTTATGTTGATTGTAAG
1 TTATTTTATGTTGATTGTAAA
*
17354 TTATTTTCTGTTGA-T-TAAA
1 TTATTTTATGTTGATTGTAAA
17373 TTATTTT
1 TTATTTT
17380 TTATGAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 10 0.42
20 1 0.04
21 13 0.54
ACGTcount: A:0.23, C:0.02, G:0.13, T:0.62
Consensus pattern (21 bp):
TTATTTTATGTTGATTGTAAA
Found at i:21041 original size:39 final size:38
Alignment explanation
Indices: 20959--21041 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 38
20949 TAACTTTCGA
* *
20959 ATAATATTTTTATTAAATAATAATAAATTAATATTTAT
1 ATAATATTTTCATTAAATAATAATAAATTAATATTAAT
* * * *
20997 TTAATATTTTCCTTAAAATAATAAT-ATTTTATATGTAAT
1 ATAATATTTTCATT-AAATAATAATAAATTAATAT-TAAT
21036 ATAATA
1 ATAATA
21042 ATATATATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
38 18 0.50
39 18 0.50
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (38 bp):
ATAATATTTTCATTAAATAATAATAAATTAATATTAAT
Found at i:26269 original size:39 final size:39
Alignment explanation
Indices: 26215--26291 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
26205 TCTCCATGAG
*
26215 TATGGGTGTGCATCGAGACAAGTTGTGAACTTTAACAAT
1 TATGGGTGTGCATCGAGACAAGCTGTGAACTTTAACAAT
*
26254 TATGGGTGTGCATCGAGGCAAGCTGTGAACTTTAACAA
1 TATGGGTGTGCATCGAGACAAGCTGTGAACTTTAACAA
26292 ATCAACTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (39 bp):
TATGGGTGTGCATCGAGACAAGCTGTGAACTTTAACAAT
Found at i:30704 original size:24 final size:24
Alignment explanation
Indices: 30677--30741 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
30667 TGACTCAAAT
* *
30677 AAATAAATAGATTTTAATTAAAAC
1 AAATAAACAGAGTTTAATTAAAAC
*
30701 AAATAAACAGAGTTTAATTGAAAC
1 AAATAAACAGAGTTTAATTAAAAC
* *
30725 AATTAAACAAAGTTTAA
1 AAATAAACAGAGTTTAA
30742 CTGAAAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (24 bp):
AAATAAACAGAGTTTAATTAAAAC
Found at i:30746 original size:24 final size:24
Alignment explanation
Indices: 30697--30752 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
30687 ATTTTAATTA
* * *
30697 AAACAAATAAACAGAGTTTAATTG
1 AAACAATTAAACAAAGTTTAACTG
30721 AAACAATTAAACAAAGTTTAACTG
1 AAACAATTAAACAAAGTTTAACTG
30745 AAA-AATTA
1 AAACAATTA
30753 TTTCTCAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.25
Consensus pattern (24 bp):
AAACAATTAAACAAAGTTTAACTG
Found at i:42904 original size:25 final size:25
Alignment explanation
Indices: 42857--42905 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
42847 ATAAAAAAAG
*
42857 TCATTTTAGTTTTCTATTTAATTTT
1 TCATTTTAGTTTTCTATTAAATTTT
*
42882 TCATTTTATTTATTC-ATTAAATTT
1 TCATTTTAGTT-TTCTATTAAATTT
42906 ATATTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.65
Consensus pattern (25 bp):
TCATTTTAGTTTTCTATTAAATTTT
Found at i:47075 original size:17 final size:17
Alignment explanation
Indices: 47055--47113 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
47045 TCTATACGAT
*
47055 TAAATAATTCAATAAAA
1 TAAATAATTCAATAATA
*
47072 TAAATAATACAA-AATA
1 TAAATAATTCAATAATA
47088 TGAAATTTAATTCAATAATA
1 T-AAA--TAATTCAATAATA
47108 TAAATA
1 TAAATA
47114 GTAGATATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
16 4 0.11
17 16 0.46
19 10 0.29
20 5 0.14
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (17 bp):
TAAATAATTCAATAATA
Found at i:47098 original size:19 final size:19
Alignment explanation
Indices: 47059--47112 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
47049 TACGATTAAA
* *
47059 TAATTCAATAAAATAAA--
1 TAATACAATAATATAAATT
47076 TAATACAA-AATATGAAATT
1 TAATACAATAATAT-AAATT
*
47095 TAATTCAATAATATAAAT
1 TAATACAATAATATAAAT
47113 AGTAGATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.13
17 10 0.33
19 11 0.37
20 5 0.17
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (19 bp):
TAATACAATAATATAAATT
Found at i:54651 original size:21 final size:21
Alignment explanation
Indices: 54610--54651 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
54600 ATTATAATTA
* *
54610 AAATCCCCAAATTTCCTCCCT
1 AAATCCCCAAATATCCACCCT
54631 AAATCCCCTAAA-ATCCACCCT
1 AAATCCCC-AAATATCCACCCT
54652 TTCTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.33, C:0.43, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATCCCCAAATATCCACCCT
Found at i:57653 original size:39 final size:39
Alignment explanation
Indices: 57589--57697 Score: 105
Period size: 39 Copynumber: 2.8 Consensus size: 39
57579 TACTGAATGC
* * *
57589 TATACTGAACTAG-AATGACATTATAAACATTACAGTGA
1 TATACTAAACTGGCAATGACACTATAAACATTACAGTGA
* * * * *
57627 TATACTGAA-TCGGTAATGACACTATAAACACTGCAGTGT
1 TATACTAAACT-GGCAATGACACTATAAACATTACAGTGA
* *
57666 TATACTAAACTGGCAGTGACACTGTAAACATT
1 TATACTAAACTGGCAATGACACTATAAACATT
57698 GCAATATAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
37 1 0.02
38 10 0.17
39 46 0.79
40 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (39 bp):
TATACTAAACTGGCAATGACACTATAAACATTACAGTGA
Found at i:57714 original size:39 final size:39
Alignment explanation
Indices: 57643--57741 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
57633 GAATCGGTAA
* * * * * *
57643 TGACACTATAAACACTGCAGTGTTATACTAAACTGGCAG
1 TGACACTGTAAACACTGCAATATAATACTAAACCGACAG
* * *
57682 TGACACTGTAAACATTGCAATATAATATTAAACCGACGG
1 TGACACTGTAAACACTGCAATATAATACTAAACCGACAG
*
57721 TGACACTGTAAACACCGCAAT
1 TGACACTGTAAACACTGCAAT
57742 GCTATACTGA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (39 bp):
TGACACTGTAAACACTGCAATATAATACTAAACCGACAG
Found at i:58394 original size:24 final size:24
Alignment explanation
Indices: 58358--58407 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
58348 CAAGTTTAGC
* *
58358 ACGTTTACTCTCGCCAGCCAATGT
1 ACGTGTACACTCGCCAGCCAATGT
* *
58382 ACGTGTACACTCGTCAGCTAATGT
1 ACGTGTACACTCGCCAGCCAATGT
58406 AC
1 AC
58408 ATTTATGCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (24 bp):
ACGTGTACACTCGCCAGCCAATGT
Found at i:58418 original size:24 final size:24
Alignment explanation
Indices: 58391--58524 Score: 133
Period size: 24 Copynumber: 5.5 Consensus size: 24
58381 TACGTGTACA
* *
58391 CTCGTCAGCTAATGTACATTTATG
1 CTCGTCAGCCACTGTACATTTATG
* * *
58415 CTCGTCAACCACTATACGTTTATG
1 CTCGTCAGCCACTGTACATTTATG
* * * *
58439 CTCGTCAGCCTCTATGCGTTTTATG
1 CTCGTCAGCCACTGTAC-ATTTATG
* *
58464 CTCGTCAACCACTGTACGTTTATG
1 CTCGTCAGCCACTGTACATTTATG
* *
58488 CTCGTCAGCCACTATATATTTATG
1 CTCGTCAGCCACTGTACATTTATG
*
58512 CTCATCAGCCACT
1 CTCGTCAGCCACT
58525 CAAATAAAAA
Statistics
Matches: 90, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
24 71 0.79
25 19 0.21
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (24 bp):
CTCGTCAGCCACTGTACATTTATG
Found at i:58471 original size:49 final size:49
Alignment explanation
Indices: 58409--58502 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
58399 CTAATGTACA
*
58409 TTTATGCTCGTCAACCACTATACGTTTATGCTCGTCAGCCTCTATGCGT
1 TTTATGCTCGTCAACCACTATACGTTTATGCTCGTCAGCCACTATGCGT
*
58458 TTTATGCTCGTCAACCACTGTACGTTTATGCTCGTCAGCCACTAT
1 TTTATGCTCGTCAACCACTATACGTTTATGCTCGTCAGCCACTAT
58503 ATATTTATGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (49 bp):
TTTATGCTCGTCAACCACTATACGTTTATGCTCGTCAGCCACTATGCGT
Found at i:62480 original size:158 final size:158
Alignment explanation
Indices: 62182--62494 Score: 441
Period size: 158 Copynumber: 2.0 Consensus size: 158
62172 GTACACAGGC
* * * * *
62182 TATATGAGTGCTGGTCTTAGATGTCCTACCGATGGTTGAGATCCGTCATTTATTGCAGATTCTTC
1 TATATGAGTGCTGGTCTTAGATGTCCTACAGATGGCTAAGATCCGTCATTGATTGCAGATTCTCC
* *
62247 ACAGCTTGTGTGAGCAGCATCGTGTAGCTTAACATCTCGACCCACAACTCGTGTGAACAGACCCA
66 ACAGCTCGTGTGAGCAGCATCATGTAGCTTAACATCTCGACCCACAACTCGTGTGAACAGACCCA
*
62312 TATCATAGCTCATGTGAGCATTACAGAT
131 TATCACAGCTCATGTGAGCATTACAGAT
* * *
62340 TATATGGGTGCTGGTCTTAGATGTCCTATAGATGGCTAAGATCCGGT-ATTGATTGCGGATTCTC
1 TATATGAGTGCTGGTCTTAGATGTCCTACAGATGGCTAAGATCC-GTCATTGATTGCAGATTCTC
* * * ** *
62404 CACAGCTCGTGTGAGCAGCATCATGTAGCTTTACATCTTGACCCACAGCTCGTGTGAGTAGGCCC
65 CACAGCTCGTGTGAGCAGCATCATGTAGCTTAACATCTCGACCCACAACTCGTGTGAACAGACCC
62469 ACT-TCACAGCTCATGTGAGCATTACA
130 A-TATCACAGCTCATGTGAGCATTACA
62495 TGCACATTTA
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
158 133 0.98
159 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (158 bp):
TATATGAGTGCTGGTCTTAGATGTCCTACAGATGGCTAAGATCCGTCATTGATTGCAGATTCTCC
ACAGCTCGTGTGAGCAGCATCATGTAGCTTAACATCTCGACCCACAACTCGTGTGAACAGACCCA
TATCACAGCTCATGTGAGCATTACAGAT
Found at i:63288 original size:21 final size:21
Alignment explanation
Indices: 63246--63301 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
63236 GAAGTATGGG
* *
63246 TTGTATCGGTAGTACCCATAC
1 TTGTATCAGTAGAACCCATAC
63267 TTGTATCAGTAGAACTCC-TAC
1 TTGTATCAGTAGAAC-CCATAC
* *
63288 TTCTAGCAGTAGAA
1 TTGTATCAGTAGAA
63302 ATCTGCAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (21 bp):
TTGTATCAGTAGAACCCATAC
Found at i:75545 original size:20 final size:20
Alignment explanation
Indices: 75509--75547 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75499 ATTTTAATTT
*
75509 ATTTTAATTTTTGTCCAATA
1 ATTTTAATATTTGTCCAATA
75529 ATTTTAAATATTT-TCCAAT
1 ATTTT-AATATTTGTCCAAT
75548 TTGGTCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTTAATATTTGTCCAATA
Found at i:79788 original size:6 final size:6
Alignment explanation
Indices: 79777--79809 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
79767 ACTCAAAGAA
79777 AAAAAG AAAAAG AAAAAG -AAAA- AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
79810 AGTCAAGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 8 0.32
6 17 0.68
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:79804 original size:16 final size:15
Alignment explanation
Indices: 79771--79810 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
79761 CTTGAAACTC
*
79771 AAAG-AAAAAAAGAA
1 AAAGAAAAAAAAAAA
79785 AAAGAAAAAGAAAAAA
1 AAAGAAAAA-AAAAAA
79801 AAAGAAAAAA
1 AAAGAAAAAA
79811 GTCAAGATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 14 0.61
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAAAA
Found at i:80704 original size:12 final size:11
Alignment explanation
Indices: 80687--80746 Score: 59
Period size: 11 Copynumber: 5.4 Consensus size: 11
80677 AGAAAATGAG
80687 AAAAATGAGAAA
1 AAAAAT-AGAAA
*
80699 AAAAATAAAAA
1 AAAAATAGAAA
* *
80710 AAAAAGAAAAA
1 AAAAATAGAAA
*
80721 AAAAATAGAAGG
1 AAAAATAGAA-A
80733 AAAAA-AGAAA
1 AAAAATAGAAA
80743 AAAA
1 AAAA
80747 GAGAGGTCGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
10 4 0.10
11 26 0.63
12 11 0.27
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (11 bp):
AAAAATAGAAA
Found at i:80723 original size:11 final size:11
Alignment explanation
Indices: 80668--80746 Score: 68
Period size: 12 Copynumber: 6.6 Consensus size: 11
80658 AATTTCACCA
80668 AAAAAAAAAAG
1 AAAAAAAAAAG
80679 AAAATGAGAAAAATG
1 AAAA--A-AAAAA-G
* *
80694 AGAAAAAAAAT
1 AAAAAAAAAAG
80705 AAAAAAAAAAG
1 AAAAAAAAAAG
80716 AAAAAAAAAATAG
1 -AAAAAAAAA-AG
**
80729 AAGGAAAAAAG
1 AAAAAAAAAAG
80740 AAAAAAA
1 AAAAAAA
80747 GAGAGGTCGA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
11 20 0.37
12 21 0.39
13 4 0.07
14 5 0.09
15 4 0.07
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:80736 original size:37 final size:35
Alignment explanation
Indices: 80667--80748 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 35
80657 GAATTTCACC
80667 AAAAAAAAAAAGAAAATGAGAAAAATGAGAAAAAAA
1 AAAAAAAAAAAGAAAA-GAGAAAAATGAGAAAAAAA
**
80703 ATAAAAAAAAAAGAAAA-A-AAAAAT-AGAAGGAAA
1 A-AAAAAAAAAAGAAAAGAGAAAAATGAGAAAAAAA
*
80736 AAAGAAAAAAAGA
1 AAAAAAAAAAAGA
80749 GAGGTCGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 11 0.26
33 8 0.19
34 6 0.14
35 1 0.02
36 1 0.02
37 15 0.36
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (35 bp):
AAAAAAAAAAAGAAAAGAGAAAAATGAGAAAAAAA
Found at i:82180 original size:189 final size:191
Alignment explanation
Indices: 81686--82521 Score: 785
Period size: 189 Copynumber: 4.4 Consensus size: 191
81676 GTGGATAAAG
* * * *
81686 AAACTTCAAATCCCATCTTTCTGGT-GAGGTACTGAGAAGT-GGTTAAAATAGGTAACAGATCTC
1 AAACTTCAAATCCCATCTTCCT-GTAGAGGTACAGAGAAGTGGGTTAAAAAAGGTAGCAGATCTC
* * *
81749 AACATCCTTGAGGTTACAATGGAGTGGAGTGAAGCACC-AGAATCTTATACCTCTAAGTTACAGT
65 AACATCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAGAATCCTATACCCCTAAGTTACAGT
* * * * *
81813 AGGTCGGAGGAAAATAATGAAGCAGAGTTTAACGTT-TCT-AAGGTTAGAGTAGAGTGGAGTA
130 GGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTTCTCTGAA-GTTACAGTAGAGTGGAGTA
81874 GAGTGAGACTTCAAATCCCATCTTCCTGGTA-AGGTACAGAGAAGTGGGTTAAAACAA---AGCA
1 -A---A-ACTTCAAATCCCATCTTCCT-GTAGAGGTACAGAGAAGTGGGTTAAAA-AAGGTAGCA
* * ** * * * *
81935 AATCTCAACGTCTTTGAGGTTATAGTGGAGTGGAGTGAAGCACCAA-AATCCTATACCCTTGAGT
59 GATCTCAACATCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAGAATCCTATACCCCTAAGT
** * * * *
81999 TGTAGTGGGCCGGATGAAAATAATGAAGCACAGCTCAACGTTCT-TGAAGCTACACT-GAAGTGG
124 TACAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGTTCTCTGAAGTTACAGTAG-AGTGG
82062 AGTA
188 AGTA
* * * *
82066 AAACTTCGAATCTCATCTTCCTGAAGAGGTACAAAGAAGTGGGTTAAAAAAGGTAGCAGATCTCA
1 AAACTTCAAATCCCATCTTCCTGTAGAGGTACAGAGAAGTGGGTTAAAAAAGGTAGCAGATCTCA
* * ** * * * * *
82131 ATATCCCTAAGGTTGTAATGGAGTGGAGTGAACCA-TAAGAATCCTATACCCCTAACTTGCAGTC
66 ACATCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAGAATCCTATACCCCTAAGTTACAGTG
* * * * *
82195 GATCGAAAGAAAATAATGAAGCAGAGCTCAACG-TCTCTGAGGTTACAGTAGAGTGGAGTG
131 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTTCTCTGAAGTTACAGTAGAGTGGAGTA
* * * * * * * * *
82255 AGACTTCAAATCCCATCTTACTGTTGAGGTATAGAGAAGTGAGATAAAACATGTAGTAGATCTCA
1 AAACTTCAAATCCCATCTTCCTGTAGAGGTACAGAGAAGTGGGTTAAAAAAGGTAGCAGATCTCA
* * * *
82320 ACATCCCTGAGGATACAGTGGAGTGGAGTGAAGCA-CTAGAATCCTATACCCCTGAGTTACAGTG
66 ACATCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAGAATCCTATACCCCTAAGTTACAGTG
* * * * * * * *
82384 GGTCAGATGAAAATAATGAAGCAGAGCTCAATG-TCTTTGAGGTTATAGTGGAGTGAAGTG
131 GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTTCTCTGAAGTTACAGTAGAGTGGAGTA
* ** * *
82444 AGACTTCAAATCCCATCTTCAAGGTA-AGGTACAGAGAAGTGGGTCAAAACAA---AGCGGATCT
1 AAACTTCAAATCCCATCTTC-CTGTAGAGGTACAGAGAAGTGGGTTAAAA-AAGGTAGCAGATCT
*
82505 CAACGTCCCTGAGGTTA
64 CAACATCCCTGAGGTTA
82522 AAGTAGAGTG
Statistics
Matches: 527, Mismatches: 100, Indels: 42
0.79 0.15 0.06
Matches are distributed among these distances:
186 4 0.01
187 62 0.12
188 6 0.01
189 295 0.56
190 4 0.01
191 2 0.00
192 106 0.20
193 39 0.07
194 8 0.02
195 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (191 bp):
AAACTTCAAATCCCATCTTCCTGTAGAGGTACAGAGAAGTGGGTTAAAAAAGGTAGCAGATCTCA
ACATCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAGAATCCTATACCCCTAAGTTACAGTG
GGTCGGATGAAAATAATGAAGCAGAGCTCAACGTTCTCTGAAGTTACAGTAGAGTGGAGTA
Found at i:82476 original size:378 final size:377
Alignment explanation
Indices: 81686--82492 Score: 929
Period size: 378 Copynumber: 2.1 Consensus size: 377
81676 GTGGATAAAG
* * * *
81686 AAACTTCAAATCCCATCTTTCTGGTGAGGTACTGAGAAGT-GGTTAAAATAGGTAACAGATCTCA
1 AAACTTCAAATCCCATC-TTCAGGTAAGGTACAGAGAAGTGGGTTAAAAAAGGTAACAGATCTCA
* * * * * * *
81750 ACATCCTTGAGGTTACAATGGAGTGGAGTGAAGCACCAGAATCTTATACCTCTAAGTTACAGTAG
65 ACATCCCTAAGGTTACAATGGAGTGGAGTGAACCACAAGAATCCTATACCCCTAACTTACAGTAG
* * * * * * *
81815 GTCGGAGGAAAATAATGAAGCAGAGTTTAACGTTTCTAAGGTTAGAGTAGAGTGGAGTAGAGTGA
130 ATCGAAAGAAAATAATGAAGCAGAGCTCAACGTCTCTAAGGTTACAGTAGAGT-G-G-AGAGTGA
* * * *
81880 GACTTCAAATCCCATCTTCCTGGTAAGGTACAGAGAAGTGGGTTAAAACAAAGCAAATCTCAACG
192 GACTTCAAATCCCATCTTACTGGTAAGGTACAGAGAAGTGAGATAAAACAAAGCAAATCTCAACA
** * * * **
81945 TCTTTGAGGTTATAGTGGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTTGTAGTGGGCC
257 TCCCTGAGGATACAGTGGAGTGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTACAGTGGGCC
* *
82010 GGATGAAAATAATGAAGCACAGCTCAACGTTCTTGAAGCTACACTGAAGTGGAGTA
322 AGATGAAAATAATGAAGCACAGCTCAACGTTCTTGAAGCTACACTGAAGTGAAGTA
* * ** * * *
82066 AAACTTCGAATCTCATCTTCCTGAAGAGGTACAAAGAAGTGGGTTAAAAAAGGTAGCAGATCTCA
1 AAACTTCAAATCCCATCTTCAGGTA-AGGTACAGAGAAGTGGGTTAAAAAAGGTAACAGATCTCA
* ** * * *
82131 ATATCCCTAAGGTTGTAATGGAGTGGAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCG
65 ACATCCCTAAGGTTACAATGGAGTGGAGTGAACCACAAGAATCCTATACCCCTAACTTACAGTAG
*
82196 ATCGAAAGAAAATAATGAAGCAGAGCTCAACGTCTCTGAGGTTACAGTAGAGT-G-GAGTGAGAC
130 ATCGAAAGAAAATAATGAAGCAGAGCTCAACGTCTCTAAGGTTACAGTAGAGTGGAGAGTGAGAC
* * * * * *
82259 TTCAAATCCCATCTTACTGTTGAGGTATAGAGAAGTGAGATAAAACATGTAGTAGATCTCAACAT
195 TTCAAATCCCATCTTACTGGTAAGGTACAGAGAAGTGAGATAAAACA--AAGCAAATCTCAACAT
* * *
82324 CCCTGAGGATACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTACAGTGGGTCA
258 CCCTGAGGATACAGTGGAGTGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTACAGTGGGCCA
* * * * * * * *
82389 GATGAAAATAATGAAGCAGAGCTCAATG-TCTTTGAGGTTATAGTGGAGTGAAGTG
323 GATGAAAATAATGAAGCACAGCTCAACGTTC-TTGAAGCTACACTGAAGTGAAGTA
* *
82444 AGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGGGTCAAAA
1 AAACTTCAAATCCCATCTTC-AGGTAAGGTACAGAGAAGTGGGTTAAAA
82493 CAAAGCGGAT
Statistics
Matches: 352, Mismatches: 69, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
376 50 0.14
377 2 0.01
378 148 0.42
379 6 0.02
380 27 0.08
381 119 0.34
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (377 bp):
AAACTTCAAATCCCATCTTCAGGTAAGGTACAGAGAAGTGGGTTAAAAAAGGTAACAGATCTCAA
CATCCCTAAGGTTACAATGGAGTGGAGTGAACCACAAGAATCCTATACCCCTAACTTACAGTAGA
TCGAAAGAAAATAATGAAGCAGAGCTCAACGTCTCTAAGGTTACAGTAGAGTGGAGAGTGAGACT
TCAAATCCCATCTTACTGGTAAGGTACAGAGAAGTGAGATAAAACAAAGCAAATCTCAACATCCC
TGAGGATACAGTGGAGTGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTACAGTGGGCCAGAT
GAAAATAATGAAGCACAGCTCAACGTTCTTGAAGCTACACTGAAGTGAAGTA
Found at i:82519 original size:93 final size:93
Alignment explanation
Indices: 82421--82630 Score: 366
Period size: 93 Copynumber: 2.3 Consensus size: 93
82411 TCAATGTCTT
*
82421 TGAGGTTATAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGG
1 TGAGGTTAAAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGG
82486 GTCAAAACAAAGCGGATCTCAACGTCCC
66 GTCAAAACAAAGCGGATCTCAACGTCCC
* *
82514 TGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTGAGGTACAGAGAAGTGG
1 TGAGGTTAAAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGG
*
82579 GTCAAAACAAAGCGGATCTCAATGTCCC
66 GTCAAAACAAAGCGGATCTCAACGTCCC
* *
82607 TGAGGTTAAAATGGAGTGGAGTGA
1 TGAGGTTAAAGTGGAGTGAAGTGA
82631 AGCACTAAAA
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 110 1.00
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.22
Consensus pattern (93 bp):
TGAGGTTAAAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGG
GTCAAAACAAAGCGGATCTCAACGTCCC
Found at i:82662 original size:469 final size:469
Alignment explanation
Indices: 82091--82961 Score: 1115
Period size: 469 Copynumber: 1.9 Consensus size: 469
82081 TCTTCCTGAA
* **
82091 GAGGTACAAAGAAGTGGGTTAAAAAAGGTAGCAGATCTCAATATCCCTAAGGTTGTAATGGAGTG
1 GAGGTACAAAGAAGTGGGTCAAAAAA-G-AGCAGATCTCAATATCCCTAAGGTTAAAATGGAGTG
*
82156 GAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGATC-GAAAGAAAATAATGAAGCAGA
64 GAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGATCGGAAA-AAAATAATAAAGCAGA
* * * * **
82220 GCTCAACGTCTCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCCCATCTTACTGTTGAGGT
128 ACTCAACATCCCTAAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCCCATCTTACTAATGAGGT
* * ** *
82285 ATAGAGAAGTGAGATAAAACATGTAGTAGATCTCAACATCCCTGAGGATACAGTGGAGTGGAGTG
193 ACAGAGAAGTGAGATAAAACAGGTAACAAATCTCAACATCCCTGAGGATACAGTGGAGTGGAGTG
*
82350 AAGCA-CTAGAATCCTATACCCCTGAGTTACAGTGGGTC-AGATGAAAATAATGAAGCAGAGCTC
258 AAGCATC-AGAATCCTATACCCCTGAGTTACAGTGGGTCGA-ATGAAAATAATAAAGCAGAGCTC
* * * *
82413 AATGTCTTTGAGGTTATAGTGGAGTGAAGTGAGACTTCAAATCCCATCTT-CAAGGTAAGGTACA
321 AATGTCCTTGAGGTTACAGCGGAGTGAAGTAAGACTTCAAATCCCATCTTGC-AGGTAAGGTACA
82477 GAGAAGTGGGTCAAAACAAAGCGGATCTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACT
385 GAGAAGTGGGTCAAAACAAAGCGGATCTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACT
82542 TCAAATCCCATCTTCAAGGT
450 TCAAATCCCATCTTCAAGGT
* * * *
82562 GAGGTACAGAGAAGTGGGTCAAAACAA-AGCGGATCTCAATGTCCCTGAGGTTAAAATGGAGTGG
1 GAGGTACAAAGAAGTGGGTCAAAA-AAGAGCAGATCTCAATATCCCTAAGGTTAAAATGGAGTGG
* ** * * * * *
82626 AGTGAAGCACTAA-AATCCTATACCGTTTAGTTGCAGTGGGTCGGATAAAAATAATAAAGCAGAA
65 AGTGAACCA-TAAGAATCCTATACCCCTAACTTGCAGTCGATCGGAAAAAAATAATAAAGCAGAA
* * * * *
82690 CTCAATATCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCTCATCTTCCTAATGAGGTA
129 CTCAACATCCCTAAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCCCATCTTACTAATGAGGTA
* * * * * ** *
82755 CATATAAGTGGGTTAAAATAGGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAGTGGAGTGA
194 CAGAGAAGTGAGATAAAACAGGTAACAAATCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGA
* ** * *
82820 AGCATCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGAATGAAAATAATAAAGTAGAGCTTAAT
259 AGCATCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAATAAAGCAGAGCTCAAT
* * * * * *
82885 GTCCTTGAGGTTACAGCGGAGTGGAGTAAGATTTCAAATCCTATCTTGCTGGTGAGGTACAGATA
324 GTCCTTGAGGTTACAGCGGAGTGAAGTAAGACTTCAAATCCCATCTTGCAGGTAAGGTACAGAGA
*
82950 AGTGGGTTAAAA
389 AGTGGGTCAAAA
82962 TAGGTAACAG
Statistics
Matches: 337, Mismatches: 57, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
469 304 0.90
470 9 0.03
471 22 0.07
472 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.25
Consensus pattern (469 bp):
GAGGTACAAAGAAGTGGGTCAAAAAAGAGCAGATCTCAATATCCCTAAGGTTAAAATGGAGTGGA
GTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGATCGGAAAAAAATAATAAAGCAGAACT
CAACATCCCTAAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCCCATCTTACTAATGAGGTACA
GAGAAGTGAGATAAAACAGGTAACAAATCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGAAG
CATCAGAATCCTATACCCCTGAGTTACAGTGGGTCGAATGAAAATAATAAAGCAGAGCTCAATGT
CCTTGAGGTTACAGCGGAGTGAAGTAAGACTTCAAATCCCATCTTGCAGGTAAGGTACAGAGAAG
TGGGTCAAAACAAAGCGGATCTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAAT
CCCATCTTCAAGGT
Found at i:82727 original size:280 final size:281
Alignment explanation
Indices: 82221--82743 Score: 710
Period size: 280 Copynumber: 1.9 Consensus size: 281
82211 TGAAGCAGAG
* * * * *
82221 CTCAACGTCTCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAATCCCATCTTACTGTTGAGGTA
1 CTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTACAGGTGAGGTA
* * * * *
82286 TAGAGAAGTGAGATAAAACATGTAGTAGATCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGA
66 CAGAGAAGTGAGATAAAACA-GAAGCAGATCTCAACATCCCTGAGGATAAAATGGAGTGGAGTGA
* * * *
82351 AGCACTAGAATCCTATACCCCTGAGTTACAGTGGGTCAGATGAAAATAATGAAGCAGAGCTCAAT
130 AGCACTAAAATCCTATACCCCTGAGTTACAGTGGGTCAGATAAAAATAATAAAGCAGAACTCAAT
* ** * *
82416 GTCTTTGAGGTTATAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGA
195 ATCCCTAAGGTTACAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGA
82481 AGTGGGTCAAAACAAAGCGGAT
260 AGTGGGTCAAAACAAAGCGGAT
82503 CTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTT-CAAGGTGAGGT
1 CTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTAC-AGGTGAGGT
* * ** *
82567 ACAGAGAAGTG-GGTCAAAACA-AAGCGGATCTCAATGTCCCTGAGGTTAAAATGGAGTGGAGTG
65 ACAGAGAAGTGAGAT-AAAACAGAAGCAGATCTCAACATCCCTGAGGATAAAATGGAGTGGAGTG
** * * *
82630 AAGCACTAAAATCCTATACCGTTTAGTTGCAGTGGGTCGGATAAAAATAATAAAGCAGAACTCAA
129 AAGCACTAAAATCCTATACCCCTGAGTTACAGTGGGTCAGATAAAAATAATAAAGCAGAACTCAA
** *
82695 TATCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCTCATCTTC
194 TATCCCTAAGGTTACAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTC
82744 CTAATGAGGT
Statistics
Matches: 207, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
280 131 0.63
281 3 0.01
282 73 0.35
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (281 bp):
CTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTACAGGTGAGGTA
CAGAGAAGTGAGATAAAACAGAAGCAGATCTCAACATCCCTGAGGATAAAATGGAGTGGAGTGAA
GCACTAAAATCCTATACCCCTGAGTTACAGTGGGTCAGATAAAAATAATAAAGCAGAACTCAATA
TCCCTAAGGTTACAGTGGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAA
GTGGGTCAAAACAAAGCGGAT
Found at i:82754 original size:187 final size:185
Alignment explanation
Indices: 82503--86075 Score: 3100
Period size: 187 Copynumber: 19.0 Consensus size: 185
82493 CAAAGCGGAT
* * * **
82503 CTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
* * * *
82568 CAGAGAAGTGGGTCAAAACAAAGCGGATCTCAATGTCCCTGAGGTTAAAATGGAGTGGAGTGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * * * *
82633 CACTAAAATCCTATACCGTTTAGTTGCAGTGGGTCGGATAAAAATAATAAAGCAGAA
130 CACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
** * * **
82690 CTCAATATCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCTCATCTTCCTAATGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTA
* * * * * *
82755 CATATAAGTGGGTTAAAATAGGTAA-CAAATCTCAATGTCCCTGAGGTTACAGTGGAGTGGAGTG
65 CAGAGAAGTGGGTCAAAACA---AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
* * * *
82819 AAGCATCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGAATGAAAATAATAAAGTAGAG
127 AAGCACCAGAATCCTATACCC-TGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * * * *
82879 CTTAATGTCCTTGAGGTTACAGCGGAGTGGAGTAAGATTTCAAATCCTATCTTGCTGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTA
* * * * * * * *
82944 CAGATAAGTGGGTTAAAATAGGTAA-CAGATCTCAACGTTCCTAAGTTTATAGTGGAGTGAAGTG
65 CAGAGAAGTGGGTCAAAACA---AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
* * * * * * * *
83008 AAGTATCAGAATCCTCTACCATTGAGTTACAGTGGGTTGGATGAAAATAATAAACTAGAG
127 AAGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * * * *
83068 CTTAACATCCCTGAGGTTACAGTGGAGTTGAGTTAGACTTAAAATCTCATCTTTCTGGCGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTA
* * * * ** *** *
83133 CAGAAAAATAGGTCTAAACAAAGTGGATCTCAACGTCCCTGAGGTTACAACAGAGTGGAATGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * *
83198 TACCAGAATCTTATACCCCTGATTTGTAGTGGGTTGGATGAAAATAATGTAGCT-GAG
130 CACCAGAATCCTATA-CCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAG-TAGAG
* * * * * *
83255 GTCAACATCCCTGAGGTTACGGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGATGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
* * * *
83320 CAAAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGTGG
65 CAGAGAAGTGGGTCAAAACA--AAGCAGATCTCAACGTCCCTGAGGTTAC-----AGTGGAGTGG
* * * * *
83385 AGTGAAGTACCAGAAT-CTATACCCCTGAGTTGCAGTGGATAGAATGAAAATAAAGAAGTAGAG
123 AGTGAAGCACCAGAATCCTATA-CCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
** * * * * **
83448 CTCAACGTCATTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATGTCATATTCCTAGTAAGGCG
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
* ** * * *
83513 CGGAGAAGTGAATCAAAACAAAGCAGATCTCAACGTCACTAAGGTTACAGTGGATTGGAGTGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * ** * *
83578 AACCAAAATCCCATACAGTTGAGTT-CTAATAGGTCGGATGAAAATAATGAAGTAGAG
130 CACCAGAATCCTATAC-CCTGAGTTGC-AGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * *
83635 CTCAAAGTCCCTAAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCTCATCTTCTTGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTA
* * * * *
83700 CAAAGAAGTGGGTTAAAACAAGTAGTAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTGA
65 CAGAGAAGTGGGTCAAAACAA--AGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGA
* * * ** * * *
83765 AGTACTAGATTTTTATACCTCTAAGTTGCAGTGGATCAGATGAAAATAATGAAGTAGAG
128 AGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
*
83824 CTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCGATC-T--TGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTA
* * * * *
83886 CAGAGAAGTGGGTCAAAACAAAGCGGATCTCAATGTCCTTGAGGTTACAATAGAGTGGAGTGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * ** *
83951 TACTAGAATTCTATACCTTGAGTTGCAGTGGGTTAGATGAAAATAATGAAGTAGTG
130 CACCAGAATCCTATACCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* ** * * * * * *
84007 CTCAACATCCCTGAGGTTACAGTAAAGTGGAGTCAGACCTCACATCCTATCCTCCTAGTCAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTA
* * * * * *
84072 TAGCGAAGTGGGTCAAAACAAAACAGATCTCAACGTCTCTGAGGTTATAGTAGAGTGGAGTGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
** * * *
84137 TGCCAGAATCTTATACCCCTGAGGTT-CTGTGGGTCGGATGAAAATAATGAAGAAGAG
130 CACCAGAATCCTATA-CCCTGA-GTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * *
84194 CACAACATCTCTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTA
* * * ** * * *
84259 CAAAG-AGTGGGTTAAAACAGGTAA-CAGATCTCAAAGTCATTGATGTTACAGTAGAGTGTAGTG
65 CAGAGAAGTGGGTCAAAACA---AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
*** *
84322 AAGCACCAGAATCCTATACTCCTGAGTCATAGTGGGTCGGATGAAAATAATAAAGTAGAG
127 AAGCACCAGAATCCTATAC-CCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * *
84382 CTCAACGTGCATGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCCGATGAGATA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
* * * * * * * * * *
84447 CAGAGAAGTGAGTTAAAACAAATCGGATCTCAACAT-TCTAGAAGTTATAGTAGAGGGGAGTGAA
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCT-GAGGTTACAGTGGAGTGGAGTGAA
* **
84511 GTACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCAAATGAAAATAA-GAAGTAGAG
129 GCACCAGAATCCTATACCC-TGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * *
84568 CTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATGTTCCTAGTGAGGTG
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
* ** * * ** * *
84633 TAGAGAAGTAAGTCAAAACAAAGCAAATTTCAACGTTACTAAGGTTACAGTGGATTGGAGTGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * *
84698 -ACCCAAAATTCTATACAACTGAGTTGTAGTGGGTTGGATGAAAATAATGAAGCAGAG
130 CA-CCAGAATCCTATAC-CCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * *
84755 CTTAAAGTCCCTAAGGTTACAGTGGAGTTGAGTGAAACTTCAAATTCCATCTTCCTGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAA-TCCATCTTCCTGGTGAGGTA
* * *
84820 C--AG-AGTGGG-CTAAAACAGGTAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTG
65 CAGAGAAGTGGGTC-AAAACA--AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
** * ** * * ** *
84881 AAGCATTAGATTTTTATACCTCTGAGTTGTAGTGGTTTAGATGAAAATAATGAAGCAGAG
127 AAGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
** * * * * * *
84941 CTCATTGTCCCTAAGGTTAGAAGTGAAGTGGAGTGAGACTTGAAATCCCATTTTCTTGGTGAGGT
1 CTCAACGTCCCTGAGGTTA-CAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGT
* * ** *
85006 ATAGAGAAGTGGGTCAAAACAATA-CGGATCTCAACGTCTTTGAGGTTACAGTGGAGTAGAGTGA
64 ACAGAGAAGTGGGTCAAAACAA-AGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGA
* * * * * * *
85070 AGCATCAGGATCCTATACCCCTAAGTTGCAGTGGATCAGATGAAAATAATCCAA-CAGAG
128 AGCACCAGAATCCTATA-CCCTGAGTTGCAGTGGGTCGGATGAAAATAAT-GAAGTAGAG
* * * *
85129 CTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCCTATCTTCCTGGTAAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTA
* * * * *
85194 CAGAGAAGT-GGACTAAAACAGGTAGCAGATCTCAATGTCCTTGTA-GTTACAGTGGAGTAGAGT
65 CAGAGAAGTGGGTC-AAAACA--AAGCAGATCTCAACGTCCCTG-AGGTTACAGTGGAGTGGAGT
* * * * * * *
85257 GAAGCACTAGATTTCTATACCTCTAAGTTGTAGTGGGTCAGATGAAAATAATGAAGTTGAG
126 GAAGCACCAGAATCCTATACC-CTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * *
85318 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAGACTTCAATTCCCATCTTCCTGGTGAAGT-
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
** * * ** * *
85382 CGAGAGAAGTGGGTCAAAACAAAGTGGATCTTAATGTCTTTGAGGTTACAATAGAGTGGAGTGAA
65 C-AGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAA
* * * ** *
85447 GCGCCAGAATTCTATACCCTGAGTTACAGTGGGTTAGATGAAAATAATGAAGTAGTG
129 GCACCAGAATCCTATACCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* ** * * * * *
85504 CTCAACGTCCCTGTGGTTACAGTAAAGTGGAGTCAGACTTCACATCCTATCCTCCAT-GTCAAGT
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCC-TGGTGAGGT
* * * * **
85568 ATAGAGAAGTGGGTTAAAACAAAGCGGATCTCATCGTCCCTGAGGTTACAACGGAGTGGAGTGAA
64 ACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAA
* * * *
85633 GCGCCAGAATCCTATATCCCTGAGGTT-CTGTGGGTCGGTTGAAAATAATGAAGCAGAG
129 GCACCAGAATCCTATA-CCCTGA-GTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * ** * *
85691 CACAACGTTCCTAATGTTACAGTGGAGTAAAGTGAGACTTCAAATCCAATCTTTCTGGTGACGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTA
* * * * * ** *
85756 CAGAGGAGTGGGTTAAAACAAGTAACAGATC-CTAGA-GTTCTTGAGGTTACAGTGGAGTATAAT
65 CAGAGAAGTGGGTCAAAACAA--AGCAGATCTC-A-ACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * * *
85819 GAAGCACC-GAAATCCTATACCCCTGAGTTGTAGTAGGTCGTATGAAAATAATAAAGTAGAG
126 GAAGCACCAG-AATCCTATA-CCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
* ** ** *
85880 TTCAATATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTATGAGATA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTA
* * * * * * * *
85945 CAAAGAAGTGAGTTAAAACAAAGCGGATCTCAATGTCTCTGAGGTTACAGTGGAGGGGACTGAAG
65 CAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * *
86010 TACCAGAATCCTATACCCCTGAGTTGTAAG-GGGTCGAATGAAAAAAAAGAAGTAGAG
130 CACCAGAATCCTATA-CCCTGAGTTG-CAGTGGGTCGGATGAAAATAATGAAGTAGAG
*
86067 TTCAACGTC
1 CTCAACGTC
86076 ACAAAGGTTA
Statistics
Matches: 2758, Mismatches: 536, Indels: 184
0.79 0.15 0.05
Matches are distributed among these distances:
183 78 0.03
184 64 0.02
185 5 0.00
186 558 0.20
187 849 0.31
188 262 0.09
189 767 0.28
190 24 0.01
191 26 0.01
192 1 0.00
193 102 0.04
194 22 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (185 bp):
CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCATCTTCCTGGTGAGGTAC
AGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGC
ACCAGAATCCTATACCCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGTAGAG
Found at i:83134 original size:658 final size:658
Alignment explanation
Indices: 81875--83179 Score: 1598
Period size: 658 Copynumber: 2.0 Consensus size: 658
81865 AGTGGAGTAG
** *
81875 AGTGAGACTTCAAATCCCATCTTCCTGGTAAGGTACAGAGAAGTGGGTTAAAACAAAGCAAATCT
1 AGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGGGTCAAAACAAAGCAAATCT
** * * *
81940 CAACGTCTTTGAGGTTATAGTGGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTTGTAGT
66 CAACGTCCCTGAGGTTAAAATGGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTTGCAGT
* * * * * *
82005 GGGCCGGATGAAAATAATGAAGCACAGCTCAACGTTCTTGAAGCTACACTGAAGTGGAGTAAAAC
131 GGGCCGGATAAAAATAATAAAGCACAACTCAACATCCCTGAAGCTACACTGAAGTGGAGTAAAAC
* * *
82070 TTCGAATCTCATCTTCCTGAAGAGGTACAAAGAAGTGGGTTAAAAAAGGTAGCAGATCTCAATAT
196 TTCAAATCTCATCTTCCTGAAGAGGTACAAAGAAGTGGGTTAAAAAAGGTAACAAATCTCAATAT
**
82135 CCCTAAGGTTGTAATGGAGTGGAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGATCG
261 CCCTAAGGTTACAATGGAGTGGAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGATCG
* * *
82200 AAAGAAAATAATGAAGCAGAGCTCAACGTCTCTGAGGTTACAGTAGAGTGGAGTGAGACTTCAAA
326 AAAGAAAATAATAAAGCAGAGCTCAACGTCTCTGAGGTTACAGCAGAGTGGAGTAAGACTTCAAA
* * * ** *
82265 TCCCATCTTACTGTTGAGGTATAGAGAAGTGAGATAAAACATGTAGTAGATCTCAACATCCCTGA
391 TCCCATCTTACTGGTGAGGTACAGAGAAGTGAGATAAAACAGGTAACAGATCTCAACATCCCTAA
* *
82330 GGATACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTACAGTGGGTCAGATGAA
456 GGATACAGTGGAGTGAAGTGAAGCACTAGAATCCTATACCACTGAGTTACAGTGGGTCAGATGAA
* ** ** * *
82395 AATAATGAAGCAGAGCTCAATGTCTTTGAGGTTATAGTGGAGTGAAGTGAGACTTCAAATCCCAT
521 AATAATGAAACAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGAAGTGAGACTTAAAATCCCAT
* * * *
82460 CTTCAAGGTAAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCTCAACGTCCCTGAGGTTAAAG
586 CTTCAAGGCAAGGTACAGAAAAATAGGTCAAAACAAAGCGGATCTCAACGTCCCTGAGGTTAAAG
82525 TAGAGTGA
651 TAGAGTGA
* **
82533 AGTGAGACTTCAAATCCCATCTTCAAGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCGGATCT
1 AGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGGGTCAAAACAAAGCAAATCT
* * * *
82598 CAATGTCCCTGAGGTTAAAATGGAGTGGAGTGAAGCACTAAAATCCTATACCGTTTAGTTGCAGT
66 CAACGTCCCTGAGGTTAAAATGGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTTGCAGT
* * * * * * * * *
82663 GGGTCGGATAAAAATAATAAAGCAGAACTCAATATCCCT-AAGGTTACAGTGGAGTGGTGTGAGA
131 GGGCCGGATAAAAATAATAAAGCACAACTCAACATCCCTGAA-GCTACACTGAAGTGGAGTAAAA
* * *
82727 CTTCAAATCTCATCTTCCT-AATGAGGTACATATAAGTGGGTTAAAATAGGTAACAAATCTCAAT
195 CTTCAAATCTCATCTTCCTGAA-GAGGTACAAAGAAGTGGGTTAAAAAAGGTAACAAATCTCAAT
* * * * * * * * * * *
82791 GTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCATCAGAATCCTATACCCTTGAGTTGTAGTGGGT
259 ATCCCTAAGGTTACAATGGAGTGGAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGAT
* * * * * *
82856 CGAATGAAAATAATAAAGTAGAGCTTAATGTC-CTTGAGGTTACAGCGGAGTGGAGTAAGATTTC
324 CGAAAGAAAATAATAAAGCAGAGCTCAACGTCTC-TGAGGTTACAGCAGAGTGGAGTAAGACTTC
* * * * * * * *
82920 AAATCCTATCTTGCTGGTGAGGTACAGATAAGTGGGTTAAAATAGGTAACAGATCTCAACGTTCC
388 AAATCCCATCTTACTGGTGAGGTACAGAGAAGTGAGATAAAACAGGTAACAGATCTCAACATCCC
** * * * * **
82985 TAAGTTTATAGTGGAGTGAAGTGAAGTA-TCAGAATCCTCTACCATTGAGTTACAGTGGGTTGGA
453 TAAGGATACAGTGGAGTGAAGTGAAGCACT-AGAATCCTATACCACTGAGTTACAGTGGGTCAGA
* *
83049 TGAAAATAAT-AAACTAGAGCTTAACATCCCTGAGGTTACAGTGGAGTTG-AGTTAGACTTAAAA
517 TGAAAATAATGAAAC-AGAGCTCAACATCCCTGAGGTTACAGTGGAG-TGAAGTGAGACTTAAAA
* * * * *
83112 TCTCATCTTTC-TGGCGAGGTACAGAAAAATAGGTCTAAACAAAGTGGATCTCAACGTCCCTGAG
580 TCCCATC-TTCAAGGCAAGGTACAGAAAAATAGGTCAAAACAAAGCGGATCTCAACGTCCCTGAG
83176 GTTA
644 GTTA
83180 CAACAGAGTG
Statistics
Matches: 540, Mismatches: 100, Indels: 14
0.83 0.15 0.02
Matches are distributed among these distances:
657 9 0.02
658 526 0.97
659 5 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (658 bp):
AGTGAGACTTCAAATCCCATCTTCAAGGTAAGGTACAGAGAAGTGGGTCAAAACAAAGCAAATCT
CAACGTCCCTGAGGTTAAAATGGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTTGCAGT
GGGCCGGATAAAAATAATAAAGCACAACTCAACATCCCTGAAGCTACACTGAAGTGGAGTAAAAC
TTCAAATCTCATCTTCCTGAAGAGGTACAAAGAAGTGGGTTAAAAAAGGTAACAAATCTCAATAT
CCCTAAGGTTACAATGGAGTGGAGTGAACCATAAGAATCCTATACCCCTAACTTGCAGTCGATCG
AAAGAAAATAATAAAGCAGAGCTCAACGTCTCTGAGGTTACAGCAGAGTGGAGTAAGACTTCAAA
TCCCATCTTACTGGTGAGGTACAGAGAAGTGAGATAAAACAGGTAACAGATCTCAACATCCCTAA
GGATACAGTGGAGTGAAGTGAAGCACTAGAATCCTATACCACTGAGTTACAGTGGGTCAGATGAA
AATAATGAAACAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGAAGTGAGACTTAAAATCCCAT
CTTCAAGGCAAGGTACAGAAAAATAGGTCAAAACAAAGCGGATCTCAACGTCCCTGAGGTTAAAG
TAGAGTGA
Found at i:85975 original size:376 final size:374
Alignment explanation
Indices: 82503--86075 Score: 3117
Period size: 376 Copynumber: 9.5 Consensus size: 374
82493 CAAAGCGGAT
* * * * **
82503 CTCAACGTCCCTGAGGTTAAAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCAAGGTGAGGTA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * *
82568 CAGAGAAGTGGGTCAAAACAAAGCGGATCTCAATGTCCCTGAGGTTAAAATGGAGTGGAGTGAAG
66 CAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * * * **
82633 CACTAAAATCCTATACCGT-TTAGTTGCAGTGGGTCGGATAAAAATAATAAAGCAGAACTCAATA
131 TACCAGAATCCTATACC-TCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACG
* * ** * *
82697 TCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCTCATCTTCCTAATGAGGTACATATAA
195 T-CCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTACAGAGAA
* * * * * * * *
82762 GTGGGTTAAAATAGGTAACAAATCTCAATGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCATCA
258 GTGGGTCAAAACAAGTAACAGATCTCAACGTTCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
* * *
82827 GAATCCTATACCCTTGAGTTGTAGTGGGTCGAATGAAAATAATAAAGTAGAG
323 GAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
* ** * * * * * *
82879 CTTAATGTCCTTGAGGTTACAGCGGAGTGGAGTAAGATTTCAAATCCTATCTTGCTGGTGAGGTA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * * * *
82944 CAGATAAGTGGGTTAAAATAGGTAA-CAGATCTCAACGTTCCTAAGTTTATAGTGGAGTGAAGTG
66 CAGAGAAGTGGGTTAAAACA---AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
* * * * * *
83008 AAGTATCAGAATCCTCTACCAT-TGAGTTACAGTGGGTTGGATGAAAATAAT-AAACTAGAGCTT
128 AAGTACCAGAATCCTATACC-TCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGC-AGAGCTC
* * * * * *
83071 AACATCCCTGAGGTTACAGTGGAGTTGAGTTAGACTTAAAATCTCATCTTTCTGGCGAGGTACAG
191 AACGT-CCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC-CATCTTCCTGGTGAGGTACAG
* * * * * * * *** *
83136 AAAAATAGGTCTAAACAAAGT---GGATCTCAACGTCCCTGAGGTTACAACAGAGTGGAATGAAG
254 AGAAGTGGGTCAAAAC-AAGTAACAGATCTCAACGTTCTTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * *
83198 TACCAGAATCTTATACCCCTGATTTGTAGTGGGTTGGATGAAAATAATGTAGCT-GAG
318 CACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAG-TAGAG
* * * * *
83255 GTCAACATCCCTGAGGTTACGGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGATGAGGTA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * *
83320 CAAAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACGTCTCTGAGGTTACAGTGGAGTGGAGTGG
66 CAGAGAAGTGGGTTAAAACA--AAGCAGATCTCAACGTCCCTGAGGTTAC-----AGTGGAGTGG
* * * * * *
83385 AGTGAAGTACCAGAAT-CTATACCCCTGAGTTGCAGTGGATAGAATGAAAATAAAGAAGTAGAGC
124 AGTGAAGTACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGC
* * * * * **
83449 TCAACGTCATTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATGTCATATTCCTAGTAAGGCGC
189 TCAACGTC-CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTAC
* ** * * * *
83514 GGAGAAGTGAATCAAAACAA--AGCAGATCTCAACG-TCACTAAGGTTACAGTGGATTGGAGTGA
252 AGAGAAGTGGGTCAAAACAAGTAACAGATCTCAACGTTC-TTGAGGTTACAGTGGAGTGGAGTGA
* * * *** * * *
83576 AGAACCAAAATCCCATACAGTTGAGTTCTAATAGGTCGGATGAAAATAATGAAGTAGAG
316 AGCACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * *
83635 CTCAA-AGTCCCTAAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCTCATCTTCTTGGTGAGGT
1 CTCAACA-TCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
* * * *
83699 ACAAAGAAGTGGGTTAAAACAAGTAGTAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTG
65 ACAGAGAAGTGGGTTAAAACAA--AGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
* * ** * * * *
83764 AAGTACTAGATTTTTATACCTCTAAGTTGCAGTGGATCAGATGAAAATAATGAAGTAGAGCTCAA
128 AAGTACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAA
83829 CGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCGATC-T--TGGTGAGGTACAGAG
193 CGTCC-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAG
* * * * * * *
83891 AAGTGGGTCAAAACAA--AGCGGATCTCAATGTCCTTGAGGTTACAATAGAGTGGAGTGAAGTAC
256 AAGTGGGTCAAAACAAGTAACAGATCTCAACGTTCTTGAGGTTACAGTGGAGTGGAGTGAAGCAC
* * * * ** *
83954 TAGAATTCTATA-CCTTGAGTTGCAGTGGGTTAGATGAAAATAATGAAGTAGTG
321 CAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
** * * * * * * *
84007 CTCAACATCCCTGAGGTTACAGTAAAGTGGAGTCAGACCTCACATCCTATCCTCCTAGTCAGGTA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * * * *
84072 TAGCGAAGTGGGTCAAAACAAAACAGATCTCAACGTCTCTGAGGTTATAGTAGAGTGGAGTGAAG
66 CAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * * *
84137 TGCCAGAATCTTATACCCCTGAGGTT-CTGTGGGTCGGATGAAAATAATGAAGAAGAGCACAACA
131 TACCAGAATCCTATACCTCTGA-GTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACG
* * *
84201 TCTCTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCCAATCTTCCTGGTGAGGTACAAAG-A
195 TC-CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAGAA
* * * * * *
84265 GTGGGTTAAAACAGGTAACAGATCTCAAAG-TCATTGATGTTACAGTAGAGTGTAGTGAAGCACC
258 GTGGGTCAAAACAAGTAACAGATCTCAACGTTC-TTGAGGTTACAGTGGAGTGGAGTGAAGCACC
* ** *
84329 AGAATCCTATACTCCTGAGTCATAGTGGGTCGGATGAAAATAATAAAGTAGAG
322 AGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * * *
84382 CTCAACGTGCATGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCCGATGAGATA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * * * * * *
84447 CAGAGAAGTGAGTTAAAACAAATCGGATCTCAACAT-TCTAGAAGTTATAGTAGAGGGGAGTGAA
66 CAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCT-GAGGTTACAGTGGAGTGGAGTGAA
** *
84511 GTACCAGAATCCTATACC-CTTGAGTTGCAGTGGGTCAAATGAAAATAA-GAAGTAGAGCTCAAC
130 GTACCAGAATCCTATACCTC-TGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAAC
* * **
84574 GTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATGTTCCTAGTGAGGTGTAGAGA
194 GTCC-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGAGA
** * * * * *
84639 AGTAAGTCAAAACAA--AGCAAATTTCAACGTTAC-TAAGGTTACAGTGGATTGGAGTGAAG-AC
257 AGTGGGTCAAAACAAGTAACAGATCTCAACGTT-CTTGAGGTTACAGTGGAGTGGAGTGAAGCA-
* * ** * *
84700 CCAAAATTCTATACAACTGAGTTGTAGTGGGTTGGATGAAAATAATGAAGCAGAG
320 CCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * * * *
84755 CTTAA-AGTCCCTAAGGTTACAGTGGAGTTGAGTGAAACTTCAAATTCCATCTTCCTGGTGAGGT
1 CTCAACA-TCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
* * * *
84819 AC--AG-AGTGGGCTAAAACAGGTAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAGTAGAGTG
65 ACAGAGAAGTGGGTTAAAACA--AAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTG
* ** * ** * * ** *
84881 AAGCATTAGATTTTTATACCTCTGAGTTGTAGTGGTTTAGATGAAAATAATGAAGCAGAGCTCAT
128 AAGTACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAA
* * * * * * * *
84946 TGTCCCTAAGGTTAGAAGTGAAGTGGAGTGAGACTTGAAATCCCATTTTCTTGGTGAGGTATAGA
193 CGT-CCTGAGGTTA-CAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTACAGA
* *
85011 GAAGTGGGTCAAAACAA-T-ACGGATCTCAACG-TCTTTGAGGTTACAGTGGAGTAGAGTGAAGC
255 GAAGTGGGTCAAAACAAGTAACAGATCTCAACGTTC-TTGAGGTTACAGTGGAGTGGAGTGAAGC
* * * * * * * *
85073 ATCAGGATCCTATACCCCTAAGTTGCAGTGGATCAGATGAAAATAATCCAA-CAGAG
319 ACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAAT-GAAGTAGAG
* * * * * *
85129 CTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCCTATCTTCCTGGTAAGGTA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
** * * * *
85194 CAGAGAAGTGGACTAAAACAGGTAGCAGATCTCAATGTCCTTGTA-GTTACAGTGGAGTAGAGTG
66 CAGAGAAGTGGGTTAAAACA--AAGCAGATCTCAACGTCCCTG-AGGTTACAGTGGAGTGGAGTG
* * * * * * * **
85258 AAGCACTAGATTTCTATACCTCTAAGTTGTAGTGGGTCAGATGAAAATAATGAAGTTGAGCTCAA
128 AAGTACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAA
* * *
85323 CGTCCTTGAGGTTACAGTAGAGTGGAGTGAGACTTCAATTCCCATCTTCCTGGTGAAGT-CGAGA
193 CGTCC-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATCTTCCTGGTGAGGTAC-AGA
* * * * *
85387 GAAGTGGGTCAAAACAAAGT---GGATCTTAATG-TCTTTGAGGTTACAATAGAGTGGAGTGAAG
255 GAAGTGGGTCAAAAC-AAGTAACAGATCTCAACGTTC-TTGAGGTTACAGTGGAGTGGAGTGAAG
* * ** ** *
85448 CGCCAGAATTCTATA-CCCTGAGTTACAGTGGGTTAGATGAAAATAATGAAGTAGTG
318 CACCAGAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * ** * * * * * *
85504 CTCAACGTCCCTGTGGTTACAGTAAAGTGGAGTCAGACTTCACATCCTATCCTCCAT-GTCAAGT
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TGGTGAGGT
* * * **
85568 ATAGAGAAGTGGGTTAAAACAAAGCGGATCTCATCGTCCCTGAGGTTACAACGGAGTGGAGTGAA
65 ACAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAA
** * * *
85633 GCGCCAGAATCCTATATCC-CTGAGGTT-CTGTGGGTCGGTTGAAAATAATGAAGCAGAGCACAA
130 GTACCAGAATCCTATA-CCTCTGA-GTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAA
* * ** * *
85696 CGTTCCTAATGTTACAGTGGAGTAAAGTGAGACTTCAAATCCAATCTTTCTGGTGACGTACAGAG
193 CG-TCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC-ATCTTCCTGGTGAGGTACAGAG
* * ** *
85761 GAGTGGGTTAAAACAAGTAACAGATC-CTAGA-GTTCTTGAGGTTACAGTGGAGTATAATGAAGC
256 AAGTGGGTCAAAACAAGTAACAGATCTC-A-ACGTTCTTGAGGTTACAGTGGAGTGGAGTGAAGC
* * *
85824 ACC-GAAATCCTATACCCCTGAGTTGTAGTAGGTCGTATGAAAATAATAAAGTAGAG
319 ACCAG-AATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
* * ** *
85880 TTCAATATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTTATGAGATA
1 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * * * *
85945 CAAAGAAGTGAGTTAAAACAAAGCGGATCTCAATGTCTCTGAGGTTACAGTGGAGGGGACTGAAG
66 CAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
* * * * * * *
86010 TACCAGAATCCTATACCCCTGAGTTGTAAG-GGGTCGAATGAAAAAAAAGAAGTAGAGTTCAACG
131 TACCAGAATCCTATACCTCTGAGTTG-CAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACG
86074 TC
195 TC
86076 ACAAAGGTTA
Statistics
Matches: 2577, Mismatches: 531, Indels: 179
0.78 0.16 0.05
Matches are distributed among these distances:
370 136 0.05
371 7 0.00
372 188 0.07
373 378 0.15
374 322 0.12
375 361 0.14
376 613 0.24
377 127 0.05
378 143 0.06
379 11 0.00
380 265 0.10
381 26 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (374 bp):
CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
CAGAGAAGTGGGTTAAAACAAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG
TACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAGCTCAACGT
CCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCATCTTCCTGGTGAGGTACAGAGAAGTG
GGTCAAAACAAGTAACAGATCTCAACGTTCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAA
TCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGTAGAG
Found at i:86581 original size:187 final size:187
Alignment explanation
Indices: 86080--88010 Score: 1657
Period size: 189 Copynumber: 10.3 Consensus size: 187
86070 AACGTCACAA
* * * * * ** * *
86080 AGGTTATAGTGGATTGTAGTGAAGAACTAAAATCCTATACCGTTAAGTTGTAGTGGGTTGGATAA
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
* * *
86145 AAATAATGAAAG-AGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAATTTCAAATCCC
66 AAATAATG-AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
* * * * * * * *
86209 ATCTTCCTAGTGAGGTACAGAGAAGTAGCTTAAAACAAGTAGTATATCTTAACGTCCTTG
130 ATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAA--AGCAGATCTCAACGTCCTTG
* * * ** * *
86269 AGGTTACAATGGAGTAGAGTGAAGCACTAGATTCCTATACCTTTAAGTTGCAGTGGGTTGGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
* * * *
86334 AAATAATGAAGAAGAGCTCAACGTCCTTGAGGTTACATTGGAGTGGTGTGAGACTTCAAATCCCA
66 AAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
*
86399 TCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAATGTCCTTG
131 TCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCTTG
* * * * * * * * * * *
86456 GGGTTGCAATAGAGTGGATTAAAGCACTAGAATTCTCTACCCCTGAATTGTAGTAGGTTAGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
* * * * * ** * *
86521 AAATCATGAAGCAGTGCTCAACGTCCTTGAGGTCACAATAAAGTGGAGTGAGAATTCAAATCCTA
66 AAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
** * * * * *
86586 TCTTCCTTGCCG-GGTATAGAGAAGTGGGTCAAAACAAAGCGGATCTCAACATCCCTA
131 TCTT-CTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCTTG
* ** * *
86643 AAGTTACAACGGGGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGGTTCT-GTGGGTTGGATG
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGA-GTTGTAGTGGGTTGGATG
* * * * * *
86707 AAAATAATAAAGCAGCGCACAACGTCCCTGAGGTTATAGTGGAGTGGTGTGAGACTTCAAATCCA
65 AAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
* * * * *
86772 ATCTTCCTGGTGAGGTACAGAGGAA-TGCGTTAAAACAAGTAGCAGATCTCAAAGTCCTTA
130 ATCTTCTTGGTGAGGTACAGA-GAAGTGGGTCAAAACAA--AGCAGATCTCAACGTCCTTG
* * * * *
86832 AGGTTACAGTGGAGTGTAGTGAAGCACTAGAATCCTTTACCCCTGAGTTGTAATGGGTCGGGTGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
* * * * *
86897 AAATAATAAAGTAGAGCTCAACGTCGTCCCTGAGGTTA-ATGTGGAGTGGAGTAAGGCTTTAAAT
66 AAATAATGAAGCAGAGCTCAA---CGTCCCTGAGGTTACA-GTGGAGTGGAGTGAGACTTCAAAT
* * * * * * * * * *
86961 CCCTTCTTCCTAGTGAGATAAAGAAAAGTGAGCCAAAACAAAGCGGATCTCAACGT-CTCTA
127 CCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCT-TG
* * * * * *
87022 AGGTTATAGTGGAGTTGAGTGAAGCACTAGAATTCTATACCTCTGAGTTGTAATGGGTCGGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
* * * * **
87087 AAATAATTAAGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTAAGACTTTAAATCTTA
66 AAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
* * * * *
87152 TCTTGCTT-GTGAGGTATAGAGAAGTGGGTTAAAACATGTAGTAGATCTCAA-GATCCCTG
131 TCTT-CTTGGTGAGGTACAGAGAAGTGGGTCAAAACA--AAGCAGATCTCAACG-TCCTTG
* * * * ****
87211 AGGTTACAGTGGAGTGGAGTGAAGCACTAAAATCCTATAACCCTGTGTT-TCAATGGCCCAGATG
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGT-AGTGGGTTGGATG
* * * * *
87275 AAAATAATAAAAG-ACAGCTCAACGTCCTTGAGATTACAGTGGAGTGGACTGAGACTTCAAATCC
65 AAAATAAT-GAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC
* * * *
87339 CATATTCCTT-GTGAGGTACAGAGAAGTGGGTCAAAACAATA-C-GTATCTGAATGCCCTTG
129 CATCTT-CTTGGTGAGGTACAGAGAAGTGGGTCAAAACAA-AGCAG-ATCTCAACGTCCTTG
* * ** * * * *
87398 ATGTTACAATAAAGTGGAGTGAAGCACCAGAATCCTATACCCCTGATTTGTAAT-GTTTCGGATG
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTT-GGATG
* * * * *
87462 AAAATAATGAA-CTGGAGATAAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCC
65 AAAATAATGAAGC-AGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCC
* * * * * * * *
87526 CATATTACTT-ATGAGGTACAGAGGAGTGGGTTAAAATAGGTAGCATATCTCAACGTCCATG
129 CATCTT-CTTGGTGAGGTACAGAGAAGTGGGTCAAAACA--AAGCAGATCTCAACGTCCTTG
* * * * ** * * *
87587 AGATTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACTCTTGAGTTACAGTAGGTCGAATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
* * * * *
87652 AAATAATGAAGTAGAGCTCAAGGTTCCTGAGGTTAAAGTGGAGTGGAGTGAGACTTCAAGTCCCA
66 AAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
* * * * * ** *
87717 TTTTGTTGGTGAGGTATAGAGAAGTGGGTTAGAACCAATAATAGATCTCAACGTCCCTG
131 TCTTCTTGGTGAGGTACAGAGAAGTGGGTCA-AAACAA-AGCAGATCTCAACGTCCTTG
* * ** * ** *
87776 AGGTTATAGTGGAGTGGAGTAAAGCACCGGAATCCTATA-CCCTTACGTTACAGTGGGTCGGATG
1 AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGA-GTTGTAGTGGGTTGGATG
* * * * * * * *
87840 AAAATAATGGAGTAGAGCTTAACGTCCCTCAGGTTAAAGTGAAGTGGAGTGAGACTTTACATCCC
65 AAAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
* * *** * * * *
87905 ATCTTCTTGGTGAGGTATAGAGAAGTGGGTCCAAACAAATTGGATCTCAATGACCCTA
130 ATCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCTTG
* * *
87963 AGGTTACAGTGGAATAGAGTGAAGCA-TCAGAATCTTATACCCCTGAGT
1 AGGTTACAGTGGAGTGGAGTGAAGCACT-AGAATCCTATACCCCTGAGT
88011 CGGAGTGGAG
Statistics
Matches: 1415, Mismatches: 286, Indels: 84
0.79 0.16 0.05
Matches are distributed among these distances:
186 8 0.01
187 535 0.38
188 42 0.03
189 663 0.47
190 101 0.07
191 3 0.00
192 63 0.04
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (187 bp):
AGGTTACAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAGTGGGTTGGATGA
AAATAATGAAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
TCTTCTTGGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCTTG
Found at i:87503 original size:376 final size:374
Alignment explanation
Indices: 86144--88010 Score: 1562
Period size: 376 Copynumber: 5.0 Consensus size: 374
86134 GGGTTGGATA
* * *
86144 AAAATAATGAAAGAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAATTTCAAATCCC
1 AAAATAAT-AAAGAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
* * * * * *
86209 ATCTTCCTAGTGAGGTACAGAGAAGTAGCTTAAAACAAGTA-GTATATCTTAACGTCCTTGAGGT
65 ATCTTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAA-TACG--TATCTCAACGCCCTTGAGGT
* * ** * * *
86273 TACAATGGAGTAGAGTGAAGCACTAGATTCCTATACCTTTAAGTTGCAGTGGGTT-GGATGAAAA
127 TACAATGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAAT-GGTTCGGATGAAAA
* * * *
86337 TAATGAAGAAGAGCTCAACGTCCTTGAGGTTACATTGGAGTGGTGTGAGACTTCAAATCCCATCT
191 TAATGAACAAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATCT
* * * * * *
86402 TCTTGGTGAGGTACAGAGAAGTGGGTCAAAACA-AAGCAGATCTCAATG-TCCTTGGGGTTGCAA
256 TCTT-GTGAGGTACAGAGAAGTGGGTTAAAACAGTAGCAGATCTCAATGATCCCTGAGGTTACAG
* * * * * * * * **
86465 TAGAGTGGATTAAAGCACTAGAATTCTCTACCCCTGAATTGTAGTAGGTTAGATG
320 TGGAGTGGAGTGAAGCACTAGAATCCTATAACCCTGAGTTGTAATAGGCCAGATG
* * * * * * ** * *
86520 AAAATCATGAAGCAGTGCTCAACGTCCTTGAGGTCACAATAAAGTGGAGTGAGAATTCAAATCCT
1 AAAATAATAAAG-AGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
* * * * * *
86585 ATCTTCCTTGCCG-GGTATAGAGAAGTGGGTCAAAACAA-AGCGGATCTCAACATCCC-TAAAGT
65 ATCTTCCTTG-TGAGGTACAGAGAAGTGGGTCAAAACAATA-CGTATCTCAAC-GCCCTTGAGGT
* * * *
86647 TACAACGGGGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGGTTCT-GTGGGTT-GGATGAAA
127 TACAATGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGA-GTTGTAAT-GGTTCGGATGAAA
* * * * * *
86710 ATAATAAAGC-AGCGCACAACGTCCCTGAGGTTATAGTGGAGTGGTGTGAGACTTCAAATCCAAT
190 ATAATGAA-CAAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCAT
* * * * *
86774 CTTCCTGGTGAGGTACAGAGGAA-TGCGTTAAAACAAGTAGCAGATCTCAAAG-TCCTTAAGGTT
254 CTT-CTTGTGAGGTACAGA-GAAGTGGGTTAAAAC-AGTAGCAGATCTCAATGATCCCTGAGGTT
* * * * * * *
86837 ACAGTGGAGTGTAGTGAAGCACTAGAATCCTTTACCCCTGAGTTGTAATGGGTCGGGTG
316 ACAGTGGAGTGGAGTGAAGCACTAGAATCCTATAACCCTGAGTTGTAATAGGCCAGATG
* * *
86896 AAAATAATAAAGTAGAGCTCAACGTCGTCCCTGAGGTTA-ATGTGGAGTGGAGTAAGGCTTTAAA
1 AAAATAATAAAG-AGAGCTCAA---CGTCCCTGAGGTTACA-GTGGAGTGGAGTGAGACTTCAAA
* * * * * * * * * *
86960 TCCCTTCTTCCTAGTGAGATAAAGAAAAGTGAGCCAAAACAA-AGCGGATCTCAACG-TCTCTAA
61 TCCCATCTTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAATA-CGTATCTCAACGCCCT-TGA
* * * * * *
87023 GGTTATAGTGGAGTTGAGTGAAGCACTAGAATTCTATACCTCTGAGTTGTAATGGGTCGGATGAA
124 GGTTACAATGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAATGGTTCGGATGAA
* * * * **
87088 AATAATTAAGC-AGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTAAGACTTTAAATCTTA
189 AATAATGAA-CAAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCA
* *
87152 TCTTGCTTGTGAGGTATAGAGAAGTGGGTTAAAACATGTAGTAGATCTCAA-GATCCCTGAGGTT
253 TCTT-CTTGTGAGGTACAGAGAAGTGGGTTAAAACA-GTAGCAGATCTCAATGATCCCTGAGGTT
* *
87216 ACAGTGGAGTGGAGTGAAGCACTAAAATCCTATAACCCTGTGTT-TCAAT-GGCCCAGATG
316 ACAGTGGAGTGGAGTGAAGCACTAGAATCCTATAACCCTGAGTTGT-AATAGG-CCAGATG
* * * *
87275 AAAATAATAAAAGACAGCTCAACGTCCTTGAGATTACAGTGGAGTGGACTGAGACTTCAAATCCC
1 AAAATAAT-AAAGAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
* * * *
87340 ATATTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAATACGTATCTGAATGCCCTTGATGTTAC
65 ATCTTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAATACGTATCTCAACGCCCTTGAGGTTAC
** * * *
87405 AATAAAGTGGAGTGAAGCACCAGAATCCTATACCCCTGATTTGTAATGTTTCGGATGAAAATAAT
130 AATGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAATGGTTCGGATGAAAATAAT
** * * *
87470 GAACTGGAGATAAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATATTACT
195 GAACAAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATCTT-CT
* * * * * * *
87535 TATGAGGTACAGAGGAGTGGGTTAAAATAGGTAGCATATCTCAACG-TCCATGAGATTACAGTGG
259 TGTGAGGTACAGAGAAGTGGGTTAAAACA-GTAGCAGATCTCAATGATCCCTGAGGTTACAGTGG
* * ** * *
87599 AGTGGAGTGAAGCACCAGAATCCTAT-ACTCTTGAGTTACAGTAGGTC-GAATG
323 AGTGGAGTGAAGCACTAGAATCCTATAAC-CCTGAGTTGTAATAGGCCAG-ATG
* * * * *
87651 AAAATAATGAAGTAGAGCTCAAGGTTCCTGAGGTTAAAGTGGAGTGGAGTGAGACTTCAAGTCCC
1 AAAATAATAAAG-AGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC
** * * * *
87716 AT-TTTGTTGGTGAGGTATAGAGAAGTGGGTTAGAACCAATA-ATAGATCTCAACGTCCC-TGAG
65 ATCTTCCTT-GTGAGGTACAGAGAAGTGGGTCA-AAACAATACGT--ATCTCAACG-CCCTTGAG
* * * ** * ** * *
87778 GTTATAGTGGAGTGGAGTAAAGCACCGGAATCCTATA-CCCTTACGTTACAGTGGGTCGGATGAA
125 GTTACAATGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGA-GTTGTAATGGTTCGGATGAA
* ** * * * * * * *
87842 AATAATGGAGTAGAGCTTAACGTCCCTCAGGTTAAAGTGAAGTGGAGTGAGACTTTACATCCCAT
189 AATAATGAACAAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCAT
* ** * * *
87907 CTTCTTGGTGAGGTATAGAGAAGTGGGTCCAAACAAATTG--GATCTCAATGA-CCCTAAGGTTA
254 CTTCTT-GTGAGGTACAGAGAAGTGGGTTAAAAC-AGTAGCAGATCTCAATGATCCCTGAGGTTA
* * * *
87969 CAGTGGAATAGAGTGAAGCA-TCAGAATCTTATACCCCTGAGT
317 CAGTGGAGTGGAGTGAAGCACT-AGAATCCTATAACCCTGAGT
88011 CGGAGTGGAG
Statistics
Matches: 1201, Mismatches: 243, Indels: 94
0.78 0.16 0.06
Matches are distributed among these distances:
374 141 0.12
375 25 0.02
376 566 0.47
377 25 0.02
378 151 0.13
379 289 0.24
380 4 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (374 bp):
AAAATAATAAAGAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA
TCTTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAATACGTATCTCAACGCCCTTGAGGTTACA
ATGGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGTAATGGTTCGGATGAAAATAATG
AACAAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATCTTCTTG
TGAGGTACAGAGAAGTGGGTTAAAACAGTAGCAGATCTCAATGATCCCTGAGGTTACAGTGGAGT
GGAGTGAAGCACTAGAATCCTATAACCCTGAGTTGTAATAGGCCAGATG
Found at i:88057 original size:39 final size:39
Alignment explanation
Indices: 87979--88057 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
87969 CAGTGGAATA
* * **
87979 GAGTGAAGCATCAGAATCTTATACCCCTGAGTCGGAGTG
1 GAGTAAAGCACCAGAATCTTATACCCCTGAGTCACAGTG
* * *
88018 GAGTAAAGCACCAGAATCTTATACTCTTGAGTTACAGTG
1 GAGTAAAGCACCAGAATCTTATACCCCTGAGTCACAGTG
88057 G
1 G
88058 GTCGGATGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (39 bp):
GAGTAAAGCACCAGAATCTTATACCCCTGAGTCACAGTG
Found at i:88195 original size:226 final size:226
Alignment explanation
Indices: 87786--88236 Score: 724
Period size: 226 Copynumber: 2.0 Consensus size: 226
87776 AGGTTATAGT
*
87786 GGAGTGGAGTAAAGCACCGGAATCCTATACCCTTACGTTACAGTGGGTCGGATGAAAATAATGGA
1 GGAGTGGAGTAAAGCACCAGAATCCTATACCCTTACGTTACAGTGGGTCGGATGAAAATAATGGA
* * *
87851 GTAGAGCTTAACGTCCCTCAGGTTAAAGTGAAGTGGAGTGAGACTTTACATCCCATCTTCTTGGT
66 GTAGAGCTTAACGTCCCTCAGGTTAAAGTGAAGTGGAGTGAGACTTTAAATCCCATATTCCTGGT
*
87916 GAGGTATAGAGAAGTGGGTCCAAACAAATTGGATCTCAATGACCCTAAGGTTACAGTGGAATAGA
131 GAGGTATAGAGAAGTGGGTCCAAACAAAATGGATCTCAATGACCCTAAGGTTACAGTGGAATAGA
*
87981 GTGAAGCATCAGAATCTTATACCCCTGAGTC
196 GTGAAGCACCAGAATCTTATACCCCTGAGTC
* * *
88012 GGAGTGGAGTAAAGCACCAGAATCTTATACTCTTGA-GTTACAGTGGGTCGGATGAAAATATTGG
1 GGAGTGGAGTAAAGCACCAGAATCCTATACCCTT-ACGTTACAGTGGGTCGGATGAAAATAATGG
* *
88076 AGTAGAGCTTAACGTCCCTCAGGTTAAAGTGGAGTGGAGTGAGACTTTAAATCTCATATTCCTGG
65 AGTAGAGCTTAACGTCCCTCAGGTTAAAGTGAAGTGGAGTGAGACTTTAAATCCCATATTCCTGG
* * * * * *
88141 TGAGGTATAGAGAAGTGGGTCTAAATAAAATGGATCTTAATTACCCTGAGGTTACAGTGGAATGG
130 TGAGGTATAGAGAAGTGGGTCCAAACAAAATGGATCTCAATGACCCTAAGGTTACAGTGGAATAG
*
88206 AGTGAAGCACCAGAATTTTATACCCCTGAGT
195 AGTGAAGCACCAGAATCTTATACCCCTGAGT
88237 TGCAGTTGGT
Statistics
Matches: 206, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
226 205 1.00
227 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (226 bp):
GGAGTGGAGTAAAGCACCAGAATCCTATACCCTTACGTTACAGTGGGTCGGATGAAAATAATGGA
GTAGAGCTTAACGTCCCTCAGGTTAAAGTGAAGTGGAGTGAGACTTTAAATCCCATATTCCTGGT
GAGGTATAGAGAAGTGGGTCCAAACAAAATGGATCTCAATGACCCTAAGGTTACAGTGGAATAGA
GTGAAGCACCAGAATCTTATACCCCTGAGTC
Found at i:88429 original size:189 final size:189
Alignment explanation
Indices: 88012--97047 Score: 7105
Period size: 189 Copynumber: 48.2 Consensus size: 189
88002 CCCCTGAGTC
* * * * * *
88012 GGAGTGGAGTAAAGCACCAGAATCTTATACTCTTGAGTTACAGTGGGTCGGATGAAAATATTGGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * *
88077 GTAGAGCTTAACGTCCCTCAGGTTAAAGTGGAGTGGAGTGAGACTTTAAATCTCATATTCCTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* ** * *
88142 GAGGTATAGAGAAGTGGGTCT-AAATA-AAATG--GATCTTAA-TTACCCTGAGGTTACAGT
131 GAGGTACAGAGAAGTGGGT-TAAAATAGGTA-GCAGATCTCAACGT-CCCTGAGGTTACAGT
* ** * * *
88199 GGAATGGAGTGAAGCACCAGAATTTTATACCCCTGAGTTGCAGTTGGTCAGATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * ** *
88264 GCATAGCTTAATGTCCCTGAAGTTACAATGGAGTGGAGTGAAACTTGGAATCCCATCTTCCTGAT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
** * * * *
88329 GAGGTACAGAGAAAAGGGTTAAAATAGGTAGCAAATCTCAATGTCTCTGAGGTTATAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* *
88388 GGAGTGGAGTGAAGCATCC-GAATCCTATACCCTTGAGTTGCAGTAGGTCGGATG-AAGTAATGA
1 GGAGTGGAGTGAAGCA-CCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * *
88451 AGTAGAGCTCAACGTCCTTAAGGTTATAGTGGAGTGGAGTAAGACTTCAAATCCCATC-TCCTTG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TG
* * * *
88515 GTGAGGTACAGGGAAGT-GGTCAAAGA-A--AAGCAGATCTCAACGT-CCTAGAGGTTAAAGT
129 GTGAGGTACAGAGAAGTGGGTTAAA-ATAGGTAGCAGATCTCAACGTCCCT-GAGGTTACAGT
* * * *
88573 GGAGTGGAGTGAAGCACTAGAATCCTATACCCCTT-AGTTGCAGTCGATCGGATGAAAATAATAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * *
88637 AGCACG-GCTCAACGTCCCTGAGGTTACACTGCAGTGGAGAGAGACTTCATATCCCATCTTCCTA
65 AGCA-GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT-
* * * * * *
88701 AG-GAGGTAAAAATAAGCGGGTTAAAATAGGTAGCAGATCTTAACGT-CCTGAAGGTTACAGT
128 GGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTG-AGGTTACAGT
* * * * * **
88762 GGAGTGGAGTGAAGCATCAGAATCCTATACTCTTGTGTTGTAATGGGTCAAATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * *
88827 GTAGAGCTTAACGTCCCTAAGGTTACAGTGGGGTGGAATGAGACTGT-AAATCCCATCTTTCTGG
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT-TCAAATCCCATCTTCCTGG
** * ** * * * * *
88891 TGAGGTACAGAGAAGT-GACTAAAA-AAGTAATAGATCTTAACGTTCTTAAGGTTATAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * *
88949 GGAGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATG-AAGTAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * *
89013 -CTAGAGCTTAACGTCCCTAATGTTACAGTAGAGTGGAGTGAGACTTCCAATCCCATC-TCCTTG
66 GC-AGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TG
* * * * * * *
89076 GTGAGGTACAAAGAAGT-GGTCAAAGTA--AAGCAGGTCTCAACGTCCTTGAGGTTAAAGT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * *
89134 GGAGTGAAGTGAAGCACCAGAATCCTATACCCCTT-AGTTACAGTCGGTTGGATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * * * * * **
89198 AGTAGGGGTCAACATCCTTGAGGTTACAGTGGAGTGGAGGGAGACTTCAAATCTCATCTTCGTAA
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * * *
89263 TGAGGTACAGATATGTGGGCTAAAATAGATAGCAAATCTTAACGTCCGTAAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * ** * *
89323 AGAGTGGAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTGGGTCAAATTAAACTAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * *
89388 GTAGAGCTTAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATTCCATCTTGCTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * *
89453 GAGGTACAGAGAAGTGGGTTAAAATAGGTAACAGATCTCAACGTTCCT-ACGATTACAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGA-GGTTACAGT
* * * * * * * * *
89512 GGAGTGGATTAAAGCATCAGAATCCTATACCCCTAAGTTACAGCGGGTTGGGTGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * * *
89577 CCAGAGCTCAACGTCTCTGAGGTTACAATAGAGTGGAGTTAGACTTCAAATTCAATCTTCTTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * **
89642 GAGGTATAAAGAAGTGGGTCAAAATA--AAGCAGATCTCAACGTCCCTAAGGTTATAAC
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * ** *
89699 GAAGTGGAATGAAGCACTAGAATGCTATACCGTTGAGTCGTTGTAGGTCGGATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * *
89764 GCTGAGCTTAACGTCCCTGAGGTTACAATAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * *
89829 GAGGTATAGAGAAGTGGGTTAAAACAGGTGGCAGATGTCAATGT-CCTGGAGGTTACAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCT-GAGGTTACAGT
* * * *
89888 GGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTCT-AAGTGGGTCGAATGAAAATAAAGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGT-TGCAGTGGGTCGGATGAAAATAATGA
* * * * * * * *
89952 AGTAGAGCTAAACGTCCTTAAGGTTAGAGTAGAGTAGAGTGAGACTTCAAATCCCATCTTCCAGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * ** * * * *
90017 TAAGGTATAGAGAATTGAG-TAAAA-A--AAAAATATCTCAACCTTACC-AAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAA-CGTCCCTGAGGTTACAGT
* * * * * ** * * **
90073 AGATTGGAGTGAAGAACCATAATCTTATATTGC-TGAGTTGAAGTGGATCGGAAAAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * *
90137 AGCAAAGCTCAATGTCCCTAAGGTTACAGTGGAGTGGAGTGAAACTTTAAATCCCATCTTCCTGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * *
90202 TGAAGTACAGAGAAGTAGGTTAAAACAGGTAGTAGATCCCAACGTCCCTAAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * * ** **
90262 GGAGTAGAGTAAAGAACTAGAATCCTATACGGC-TAAGTTACAGTGGGTCAAATGAAAATAACCA
1 GGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * ** **
90326 AGCAGAGCTCAATGTCCCTGAAGTTATAGTGGAGTGGAGTGAGACTTCAAATATCATCTTTTTGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * ** * *
90391 TGAGGTATAGAGAAGTGGGTCAAAACA-AAATG--GATCTCAACGTCTCTGAGGTTACAAT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTA-GCAGATCTCAACGTCCCTGAGGTTACAGT
* * * ** * * ** *
90449 AGAGTGGAGTGAAGCACTAAAATTTTATACCCTTGAGTTGTAGTGCGTTAGATGTAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * ** ** * * * *
90514 GCATAGCTGAACGTATCTTTGGTTACAGTAGAGTGGAGTGAGAGTTCAAATCCTATCTTCCTAGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * ***
90579 AAGGTACAGAGAAGTGGGTCAAAACA--AAGCGGATCTCAACGTTTTTGAGGTTACA-T
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * ** * * **
90635 AGAGTAGAGTGAAGCACCAGAATCCTA-AGCCCCTAAGTTATAGTGGGTTGGATAAAAATAATCT
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * *
90699 AGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCCCATATTCCTGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* *
90764 TGAGGTACAGAGAAGTGGGCTAAAATAGGTAGCAGATCTCAACGTCCTTGAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * *
90824 GGAGTAGAGTGAAGCACTA-AATTTCTATA-CCTCTAAGTTGTAGTGGGTCAGATGAAAATAATG
1 GGAGTGGAGTGAAGCACCAGAA-TCCTATACCCT-TGAGTTGCAGTGGGTCGGATGAAAATAATG
* ** * * * *
90887 AAGCTGAGCTCAACGTCCCCAAGGTTACAATGGAGTGGAGTGAGACTTCAAATTCCATATTCTTG
64 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * * ** * ** * *
90952 GTGAGGTACAAAGAAGAGGGTCAAAACA-AAATG--GATCTCAATGTCTTTGACGTTACAAT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTA-GCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * *
91011 AGAGTGGAGTGAAGCACCAGAATTCC-ATA-CCTTGATTTGTAGTGGGGCAGATAAAAATAAAGA
1 GGAGTGGAGTGAAGCACCAGAA-TCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* ** * * * * *
91074 AGCAGTGCTCAACGTCCCTGAGGTTACAGTAAAGTGGAGTCAGACTTCACATCCTATCCTCCTAG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * *
91139 TCAGGTATAGAGAAGTGGGTCAAAACAAAGT-G--GATCTCAATGTCCCTGAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAA-TAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
**
91197 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGGTT--ATGTGGGTTAGATGAAAATAATG
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGCA-GTGGGTCGGATGAAAATAATG
* * * * * *
91260 AAGCAGAGCACAACATCCCTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCCAATCTTCTTG
64 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * * ** *
91325 GTGAGGTATAGAGGAGTGGGTTAAAACAGGTAGCAGATCTTAAATTCCTTGAGGTTACAGT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * *
91386 TGAGAGTAGTGAAGCACC-GAAATCTTATACCCTTGAGTTGTAGTGGGTCTGATGAAAATAATAA
1 GGAGTGGAGTGAAGCACCAG-AATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * * * * **
91450 AGTAGAGCTCAACATCCTTGAGGTTATAGTGGAGTGAAGTGAGACTTCAAATCTCATCTTTCTAA
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * * * * *
91515 TGAGATAGAGAGAAGTGAGTTAACATA--AAG-AGAATCTCAGCATCCTTAAGGTTATAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAG-ATCTCAACGTCCCTGAGGTTACAGT
* * * ** *
91573 GGAGTGGAGTGAAGTACCAGAATCCTATACCCCTGAGTTGTAAG-GGGTCAAATGAAAATAAAGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTG-CAGTGGGTCGGATGAAAATAATGA
* * * * * * *
91637 AGTATAGCTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCGTATTCCTAG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
** * * * * * * * ** *
91702 TGAGGTGTAGAGAACTGAGTCAAAACA--AAGTAGATCTCAACATCAGTAAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * **
91760 -TAGTTGCAGTGAAGAACTAAAATCCTATACCGC-TGAGTTATAGTGGGTCGGATGAAAATAATG
1 GGAG-TGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTGCAGTGGGTCGGATGAAAATAATG
* * * * *
91823 AAGCTA-ACCTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACTTCAAATCCGATCTTCCT
64 AAGC-AGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
* *
91887 AGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAATGTCCCTGAGGTTACAGT
128 GGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * ** *
91949 GGAGTAGAGTAAAGCACTAGATTCCTATA-CCTTTATGTTATAGTGGGTCGGATG-AAATAATAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGCAGTGGGTCGGATGAAAATAATGA
* * * * * * * *
92012 AGAAGAGCTGAACGACCCTGAGGTTACAGCGGAGTGGTGTGAGGCTTTAAATTCCATCTT-CTGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT-G
* * * * * *
92076 GTGAGGTACAGACATGTGGG-T-CAA-A---A-C---T-TTATAC--CCCTGA--ATAGAGT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCA-ACGTCCCTGAGGTTACAGT
* * * * * * * ** * * * * *
92123 AGAGTGAAGT--A-C-CAAAATTCTATA-CCCCTGAATTATAG-TG-GGTTAGATGA-AAATAAT
1 GGAGTGGAGTGAAGCACCAGAATC-CTATACCCTTGAGT-T-GCAGTGGGTCG--GATGAA-AAT
* * * * * * **
92180 GAA-GTAGTGCCCA-ACGTCCCTGAGGT-CAT-A-G-TAAAGCAGAGT-GA----GACTTCAAA-
60 -AATG-A-AG--CAGA-G-CTC-AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT
* * * * * * *
92233 CCCTATCTTCCTAGTCAGTTATAGAGAAGTGGGTCAAAATA--AAGCGGATCTCAACGTCCCTGA
117 CCC-ATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGA
*
92296 GGTTACAGCA
181 GGTTACAG-T
* * * ** *
92306 GG-GTTGAGTGAAGCACCAAAATCCAATA-CCTCTGAGGTT-TTGTGGGTCAGATGAAAATAATG
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCT-TGA-GTTGCAGTGGGTCGGATGAAAATAATG
* * * ** * * *
92368 AAGCAGAGCACAACG-CCTCTAAAGTTATTGTGAAGTAGAGTGAGACTTCAAATCCAATCTTCCT
64 AAGCAGAGCTCAACGTCC-CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
* * * * * * * * * *
92432 AGTGAGGTATAGAGGAGTGGGTTAAAACAAGTAACAGATCTCAAAGTCCTTAAGGTTATAGT
128 GGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
** * * * *
92494 GGAGTTTAGTGAAGTACCAGAATCCTATACCCTTGAGTTGTAGTGGGTTGGATGAAAATAATAAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* *
92559 GTAGAGCTCAACGTCGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCTT
66 GCAGAGCTCAA---CGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
* * * * * * * *
92624 GGTGAGATACAGAGAAGTGAGTTAAAACA--AAGCCGATCTCAACGTCTCTAAGGTTATAGT
128 GGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * ** *
92684 AGAGT-GATGTGAAGAACAAGAATCCTGTACCCCTGAGTTGTTGTGGGTCAGATGAAAATAATGA
1 GGAGTGGA-GTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * * * *
92748 AGCAGAGCTCAACGTCTCTAAGGTTATAGTGGAGTGGAGTAAGACTTTAAATCCCATCTTACTAG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * *
92813 TAAGGTATAGAGAATTGGGTTAAAATAGGTAACATATCTCAAC-TACCCTGAGATTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGT-CCCTGAGGTTACAGT
* ** *
92873 AGAGTGGAGTGAAGCACCAGAATCCTATACTCC-TGAGTTATAGTGGGTCGAATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * * * * * * * *
92937 AGTTAAAGCTCAAGGTTCTTGAGGTTAAAATGGAGTGGAGTGAGACTTCAAGTCCCATTTTACTA
65 AG-CAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * ** * * * *
93002 GTGAGGTACAGAGAAGTGGGTTAGAACAGGAAATAAATCTCAACGTCCCTAAGGTTATAAT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * * * *
93063 GGAGTAGAGTGAAGTACCAGAATCCTATACCTTTAATTTACAGTGGGTCGAAAGAAAATAATGGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * * * *
93128 GTAGAGCTTAAAGTCTC-GCAGGTTAAAGTGAAGTGGAGTGAGACTTTACATCCCATCTTCCTAG
66 GCAGAGCTCAACGTCCCTG-AGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* *** *
93192 TGAGGTACAGAGAAGTGGGTCTAAACA-A---AGTAGATCTCAATAACCCTAAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGT-TAAA-ATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * *
93250 GGAATGGAGTGAAGCACAAGAATCTTATGCCCTTGAGTTACAGTGGGTCAGATGAAAATAATAAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * * **
93315 GCATAACTCAATGTCCTTGAAGTTACAGTAGAGTGGAGTGAAACTTTGAATCCCATCTTCCTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * *
93380 GAGATATAGAGAAATGGGTTAAAATAGGTAGCAAATCTCAATGTCCCTAAGGTTATAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * *
93439 GGAGTGGAGTGAAACATCAGAATCCTATACCCTTGAGTTGCAGTAGGTCGGATG-AAGTAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * *
93503 GTAGAGCTCAATGTCCCTAAGGTTATAGTGGAGTGGAGTGAGACTTTAAATCCCATC-TCCTTGG
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TGG
* * * ** * * *
93567 TGAGGTACAGGGAAGT-GATCAAAGCA--AAGTAGATCTCAACGT-CCTAGAGGTTAAAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCT-GAGGTTACAGT
* * *
93624 GGAGTGAAGTGAAGCACCAGAATCCTATACCTCTT-AGTTGCTGTCGGTCGGATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * *
93688 AGCA-ATGCTCAACGTTCCTGAGGTTACACTGGAGTGGAGAGAGACTTCAAATCACATCTTCCTA
65 AGCAGA-GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * * *
93752 ATGAGGTACAGATAAGTTGGTTAAAATAGGTAGCAGATCTTAACGTCCCT-ATGGTTATAGT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGA-GGTTACAGT
* * * * * *
93813 GGAGTGGAGTGAAGAACCAGAATTCTATACTCTTAAGTTGTAGTGGGTCGAATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * *
93878 GTAGAGCTTAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTACTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * * * *
93943 GAGGTATAAAGAAGTGGGATAAAATATGT-GATAGATCTCAACGTTCTTAAGGTTATAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAG-CAGATCTCAACGTCCCTGAGGTTACAGT
* * * * *
94002 GGAGTGGAGTGAAGCATCAAAATCCTATACCCTTGAGTTGCAGTTGGTCGAATG--AATGAATAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAAT-AATGA
* * * *
94065 AGTAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCTAATCTCATC-TCCTTG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TG
* ** * *
94129 GTGAGGTACAGAGAAGT-GGTCAAAGCA--TAGCAGATCTCAACGTCCTTGAGGTTAAAGT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * ** * * * * *
94187 GGAGTGGAGTGAAGTACCAGAATCTTACACCCCTT-AGTTATAATCGATTGGATAAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
** * * * * * **
94251 AATAGGGCTTAACGTCCTTGAGGTTACAGTGGAGTGGAGCGAGACTTCAAATCCCATCTTCGTAA
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * *
94316 TGAGGTACAGATATGTGGGTTAAAATAGATAAG-AAATCTTAACGTCCCTAAGGTTATAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGT-AGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * ** * * * * *
94376 GAAGTGGAGTGAAGTACCAGAACCCTATACTTTTGAGTTGTAGTGGGTCGAATTAAATTAATAAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * ** *
94441 GTAGAGTTTAACGTCCTTGAGGTTACAGTGGAATGGAGTGAGACTTTAAATCCCATCTTGTTGAT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * *
94506 GAGGTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTTCCT-ACGGTTATAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGA-GGTTACAGT
* * * * * * *
94565 AGAGTGGAGTAAAGCATCAGAATCCTATACCCCTAAGTTACAGTGGGTCGGATGAAAATAATTAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* ** * * * * * *
94630 GCAGAACTTGACGTCCATGAGGTTACAATAGAGTGGAGTTAAACTTCAAATCCAATCTTCCTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * * * * *
94695 GAGGTACAAAGAAGTGGGTCAAACTAAAGT-G--GATTTCGACGCCCCTAAGGTTAGAAT
131 GAGGTACAGAGAAGTGGGTTAAAAT-AGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * ** * *
94752 GGAGTGGAATGAAGCACCAGAATCCTATACCCTTTAGTTGTTGTAGGTTGGATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * ** * * *
94817 ACTGAGCTTAATGTCTTTGAGGTTACAATAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * *
94882 GAGGTACAGAGATGTGGGTCAAAATAGGTAGCAGATTTCAACGTCCCTGAGGTTACAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * *** * *
94941 GGAGTGGAGTGAAGCACCAGAATTCTATACCGTTGAGTCT-CAAAAGGTCGAATGAAAATAAAGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGT-TGCAGTGGGTCGGATGAAAATAATGA
* * * * * * *
95005 AGTAGAGCTAAAAGTCCTTGAGGTTAGAATGGAGTAGAGTGAGACTTCAAATCCCATCTTCCTGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * * * * *
95070 TAAGGTACAGAGAACTGGGTCAAAACA--AAGAATATTTCAACGTCACTAAGGTTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * * * *
95128 GGATTGGAGTGAAGAACCAAAATCTTATATCGTTCAGTTGAAGTGGGTCGGATAAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * *
95193 GCAGAGCTCAACG-CCCTTGAGGTTAAAGTGGAGTGGAGTGAAACTTCAAATCTCATCTTCTTGG
66 GCAGAGCTCAACGTCCC-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * *
95257 TGAGGTACAGAGAAGTAGGTTAAAATAAGTAGTAGATCTCAACGTCCCTGAGGTTACTGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * * **
95317 GGAGTAGAGTGAAGTACTAGAATCCTATGCCC-TAAGTTACAGTGGGTCGGATAAAAATAACCAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* **
95381 GCAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTTTTGGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * ** *
95446 GAGGTACAGAGAAGTGAGTCAATACA-AAAT-G--GATCTCAACGTCCCTGAGGTTACAAT
131 GAGGTACAGAGAAGTGGGTTAA-A-ATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * ** * * * ** ** *
95503 AGAGTGGAGTGAAGCACCAAAATTTTATACCCCTAAGTTGTAGTGCATTAGTTGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * * ** * * **
95568 GCATAGCTCAACATCTCTTAGGTTACAATTGAGTGGAGTGAGAGTTCAAATCTTATATTACTAAT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * ** * * * *
95633 GAGGTACAAAAAAGTGGGACAAAACA--AAGCGGATCTCAACGTCCCTGAGGTTATAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * *
95690 TGAGTGTAGTGAAGCACCA-AATCATATACCCCTAAGTTGTAGT-GGTCGGATAAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * *
95753 GGAGAGATCAACGTCCTCT-AGGTTACAGTAGAGTGAAGTGAGAGTTCAAATCCCATCTTCCTGG
66 GCAGAGCTCAACGTCC-CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * *
95817 TGAGGTACAGAGGAGTGGGTTAAAACAGGTAGCAGATCTCAACGTCCTTGAGGTTACTGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * *
95877 GGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCAATGGGTTGAATGAAAATAAAGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * *
95942 GTAGAGCTCAACATCCTTGAGGTTATAGTGGAGTTGAGTGAGACTTCAAATCCCATCTTCCTAGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * *
96007 GAGGTACAGAGAAGTGAGTCAAAACA--AAGC-GTATCTCAACGTCACTAAGGTTATAGT
131 GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAG-ATCTCAACGTCCCTGAGGTTACAGT
* * * *
96064 GGATTGGAGTGAAGCA-CAGAAATTCTATACCAC-TGAGTTGTAGTGGGTTGGATGAAAATAATG
1 GGAGTGGAGTGAAGCACCAG-AATCCTATACC-CTTGAGTTGCAGTGGGTCGGATGAAAATAATG
* * * * * *
96127 AAGTAGAGCTTAACATCCTTGAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTA
64 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * * * * * * **
96192 GTGCGATTCATAGAAGTGGGTTAAAACAAGAAGCAGATCTCAATGTCTTTGAGGTTACAGT
129 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * * * * * *
96253 GGAGTAGAGTGAAGTACCAGAATCCTCTACCCCTAAGTTACAGTGGGTCGAATGAAAATAATCCA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAAT-GA
* * * * *
96318 A-CAGAGCTCAATGCCCCTGAGGTTATAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCTTGG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * *
96382 TGAGGTACAGAGAAGTGGGTCAAAACA--AAGC-GTATCTGAATGTCCTTGAGGTTACAAT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAG-ATCTCAACGTCCCTGAGGTTACAGT
** * * ** ** *
96440 AAAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTATAGTGTTTTGGATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATG-A
* * * * * * * *
96505 ATCA-AGATAAACGACCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTACTTG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * *
96569 TGAGGTATAGAGAAGTGGCTTAAAATAGGTAGTAGATCTCAACGTCCTTGAGATTACAGT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * *
96629 AGAGTGGAGTGAACCACCAGAATCCTATACTCC-TGAGTTACAGTGGGTCGAATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTTGAGTTGCAGTGGGTCGGATGAAAATAATGA
* * * * * * * * * * *
96693 AGTAGAGCTCAAGGTTCCTGAGGTTAAAATGGAGGGGAGTGAGACTTCAAGTCGCATTTTGCTAG
65 AGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* ** ** * * *
96758 TGAGGTACAGAGAAGTGGGTTAGAACCGGTAATAGATCTCAATGTCCCTGAGGTTATAAT
130 TGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* *
96818 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * * * *
96883 GTAGAGCTTAACATCCCTCAGGTTAAAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTCCTTGT
66 GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * *
96948 GAGGTACAGAGAAGTGGGTTTAAACA-AAGT-G--GATCTCAATGACCTTAAGGTTACAGT
131 GAGGTACAGAGAAGTGGG-TTAAA-ATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
* * * *
97005 GGAATGGAGTGAAGCACCAAAATCTTATACCCCTGAGTTGCAG
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAG
97048 AGTGAGACTT
Statistics
Matches: 7068, Mismatches: 1533, Indels: 496
0.78 0.17 0.05
Matches are distributed among these distances:
169 2 0.00
170 38 0.01
171 11 0.00
172 6 0.00
173 4 0.00
174 17 0.00
175 11 0.00
176 8 0.00
177 5 0.00
178 11 0.00
179 7 0.00
180 10 0.00
181 3 0.00
182 17 0.00
183 6 0.00
184 14 0.00
185 494 0.07
186 761 0.11
187 2112 0.30
188 523 0.07
189 2654 0.38
190 285 0.04
191 3 0.00
192 64 0.01
193 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (189 bp):
GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
GCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
GAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAACGTCCCTGAGGTTACAGT
Found at i:88849 original size:94 final size:93
Alignment explanation
Indices: 88739--89053 Score: 254
Period size: 93 Copynumber: 3.4 Consensus size: 93
88729 GGTAGCAGAT
88739 CTTAACGT-CCTGAAGGTTACAGTGGAGTGGAGTGAAGCATCAGAATCCTATACTCTTGTGTTGT
1 CTTAACGTCCCT-AAGGTTACAGTGGAGTGGAGTGAAGCATCAGAATCCTATACTCTTGTGTTGT
88803 AATGGGTCAAATGAAAATAATGAAGTAGAG
65 AATGGGTCAAATGAAAATAATGAA-TAGAG
* * * * * *
88833 CTTAACGTCCCTAAGGTTACAGTGGGGTGGAATG-AG-A-CTGTAAATCCCAT-CTTTCTGGTGA
1 CTTAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCATCAG--AATCCTATAC--TCTTGTGT
* * * * *
88894 GGTACA-GAG--AAGTGACTAAA-AAAGTAATAGAT
62 TGTA-ATGGGTCAAATGA--AAATAATG-AATAGAG
* * * * * * *
88926 CTTAACGTTCTTAAGGTTATAGTGGAGTGGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCA
1 CTTAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCATCAGAATCCTATACTCTTGTGTTGTA
* * *
88991 GTGGGTCAGATG-AAGTAATGAACTAGAG
66 ATGGGTCAAATGAAAATAATGAA-TAGAG
* *
89019 CTTAACGTCCCTAATGTTACAGTAGAGTGGAGTGA
1 CTTAACGTCCCTAAGGTTACAGTGGAGTGGAGTGA
89054 GACTTCCAAT
Statistics
Matches: 166, Mismatches: 37, Indels: 37
0.69 0.15 0.15
Matches are distributed among these distances:
91 2 0.01
92 11 0.07
93 89 0.54
94 53 0.32
95 9 0.05
96 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (93 bp):
CTTAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCATCAGAATCCTATACTCTTGTGTTGTA
ATGGGTCAAATGAAAATAATGAATAGAG
Found at i:89845 original size:376 final size:375
Alignment explanation
Indices: 88012--97043 Score: 7155
Period size: 376 Copynumber: 24.1 Consensus size: 375
88002 CCCCTGAGTC
* * * * *
88012 GGAGTGGAGTAAAGCACCAGAATCTTATACTCTTGAGTTACAGTGGGTCGGATGAAAATATTGGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * * *
88077 GTAGAGCTTAACGTCCCTCAGGTTAAAGTGGAGTGGAGTGAGACTTTAAATCTCATATTCCTGGT
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * *** * * * * * *
88142 GAGGTATAGAGAAGTGGGTCTAAATAAAATGGATCTTAA-TTACCCTGAGGTTACAGTGGAATGG
131 GAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGT-CCCTAAGGTTATAATGGAGTGG
** * * * *
88206 AGTGAAGCACCAGAATTTTATACCCCTGAGTTGCAGTTGGTCAGATGAAAATAATGAAGCAT-AG
195 AGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGC-TGAG
* * * * * ** *
88270 CTTAATGTCCCTGAAGTTACAATGGAGTGGAGTGAAACTTGGAATCCCATCTTCCTGATGAGGTA
259 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
** * * * * *
88335 CAGAGAAAAGGGTTAAAATAGGTAGCAAATCTCAATGTCTCTGAGGTTATAGT
324 CAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTC-CTGAGGTTACAGT
* * *
88388 GGAGTGGAGTGAAGCATCC-GAATCCTATACCCTTGAGTTGCAGTAGGTCGGATG-AAGTAATGA
1 GGAGTGGAGTGAAGCA-CCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * *
88451 AGTAGAGCTCAACGTCCTTAAGGTTATAGTGGAGTGGAGTAAGACTTCAAATCCCATC-TCCTTG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TG
*
88515 GTGAGGTACAGGGAAGT-GGTCAAAGA-AAAGCAGATCTCAACGT-CCTAGAGGTTA-AAGTGGA
129 GTGAGGTACAGAGAAGTGGGTCAAA-ATAAAGCAGATCTCAACGTCCCTA-AGGTTATAA-TGGA
* * * * *
88576 GTGGAGTGAAGCACTAGAATCCTATACCCCTT-AGTTGCAGTCGATCGGATGAAAATAATAAAGC
191 GTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGC
* * * * * *
88640 ACG-GCTCAACGTCCCTGAGGTTACACTGCAGTGGAGAGAGACTTCATATCCCATCTTCCTAAG-
255 -TGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT-GGT
* * * * * * *
88703 GAGGTAAAAATAAGCGGGTTAAAATAGGTAGCAGATCTTAACGTCCTGAAGGTTACAGT
318 GAGGTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCCTG-AGGTTACAGT
* * * ** * **
88762 GGAGTGGAGTGAAGCATCAGAATCCTATACTCTTGTGTTGTAATGGGTCAAATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * *
88827 GTAGAGCTTAACGTCCCTAAGGTTACAGTGGGGTGGAATGAGACTGT-AAATCCCATCTTTCTGG
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACT-TCAAATCCCATCTTCCTGG
** ** * * * *
88891 TGAGGTACAGAGAAGTGACT-AAAA-AAGTAATAGATCTTAACGTTCTTAAGGTTATAGTGGAGT
130 TGAGGTACAGAGAAGTGGGTCAAAATAA--AGCAGATCTCAACGTCCCTAAGGTTATAATGGAGT
* * * * *
88954 GGAGTGAAGCATCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATG-AAGTAATGAA-CTAG
193 GGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-G
* * * * *
89017 AGCTTAACGTCCCTAATGTTACAGTAGAGTGGAGTGAGACTTCCAATCCCATC-TCCTTGGTGAG
257 AGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TGGTGAG
* * * *
89081 GTACAAAGAAGT-GG-T-CAA-A-GTAAAGCAGGTCTCAACGTCCTTGAGGTTAAAGT
321 GTACAGAGAAGTGGGTTAAAACAGGT-AA-CAGATCTCAACGTCC-TGAGGTTACAGT
* * *
89134 GGAGTGAAGTGAAGCACCAGAATCCTATACCCCTT-AGTTACAGTCGGTTGGATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * * * * * **
89198 AGTAGGGGTCAACATCCTTGAGGTTACAGTGGAGTGGAGGGAGACTTCAAATCTCATCTTCGTAA
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * * *
89263 TGAGGTACAGATATGTGGG-CTAAAATAGATAGCAAATCTTAACGTCCGTAAGGTTACAGTAGAG
130 TGAGGTACAGAGAAGTGGGTC-AAAATA-A-AGCAGATCTCAACGTCCCTAAGGTTATAATGGAG
* ** * *
89327 TGGAGTGAAGCACCAGAATCCTATACTCTTGAGTTGTAGTGGGTCAAATTAAACTAATGAAG-TA
192 TGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-
* * * * *
89391 GAGCTTAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATTCCATCTTGCTGGTGAG
256 GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* *
89456 GTACAGAGAAGTGGGTTAAAATAGGTAACAGATCTCAACGTTCCT-ACGATTACAGT
321 GTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACG-TCCTGA-GGTTACAGT
* * * * * * * *
89512 GGAGTGGATTAAAGCATCAGAATCCTATACCCCTAAGTTACAGCGGGTTGGGTGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
** * * * * * * *
89577 CCAGAGCTCAACGTCTCTGAGGTTACAATAGAGTGGAGTTAGACTTCAAATTCAATCTTCTTGGT
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * *
89642 GAGGTATAAAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAACGAAGTGGA
131 GAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTGGA
* * * * * * *
89707 ATGAAGCACTAGAATGCTATACCGTTGAGTCGTTGTAGGTCGGATGAAAATAATGAAGCTGAGCT
196 GTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCTGAGCT
* * * * *
89772 TAACGTCCCTGAGGTTACAATAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTATA
261 CAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACA
** * *
89837 GAGAAGTGGGTTAAAACAGGTGGCAGATGTCAATGTCCTGGAGGTTACAGT
326 GAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCCT-GAGGTTACAGT
* * *
89888 GGAGTGGAGTGAAGCACCAAAATCCTATACCCTTGAGTCTA-AGTGGGTCGAATGAAAATAAAGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGT-TACAGTGGGTCGGATGAAAATAATGA
* * * * * * *
89952 AGTAGAGCTAAACGTCCTTAAGGTTAGAGTAGAGTAGAGTGAGACTTCAAATCCCATCTTCCAGG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * ** * * * * * * *
90017 TAAGGTATAGAGAATTGAGT-AAAA-AAAAAATATCTCAACCTTACC-AAGGTTACAGTAGATTG
130 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAA-CGTCCCTAAGGTTATAATGGAGTG
* * * ** * * ** **
90079 GAGTGAAGAACCATAATCTTATATTGC-TGAGTTGAAGTGGATCGGAAAAAAATAATGAAGCAAA
194 GAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCTGA
* * * * *
90143 GCTCAATGTCCCTAAGGTTACAGTGGAGTGGAGTGAAACTTTAAATCCCATCTTCCTGGTGAAGT
258 GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
* ** * *
90208 ACAGAGAAGTAGGTTAAAACAGGTAGTAGATCCCAACGTCCCTAAGGTTACAGT
323 ACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGT-CCTGAGGTTACAGT
* * * * * * ** **
90262 GGAGTAGAGTAAAGAACTAGAATCCTATACGGC-TAAGTTACAGTGGGTCAAATGAAAATAACCA
1 GGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * * ** **
90326 AGCAGAGCTCAATGTCCCTGAAGTTATAGTGGAGTGGAGTGAGACTTCAAATATCATCTTTTTGG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * *** * * * *
90391 TGAGGTATAGAGAAGTGGGTCAAAACAAAATGGATCTCAACGTCTCTGAGGTTACAATAGAGTGG
130 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTGG
* * ** * ** *
90456 AGTGAAGCACTAAAATTTTATACCCTTGAGTTGTAGTGCGTTAGATGTAAATAATGAAGCAT-AG
195 AGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGC-TGAG
* ** ** * * * * *
90520 CTGAACGTATCTTTGGTTACAGTAGAGTGGAGTGAGAGTTCAAATCCTATCTTCCTAGTAAGGTA
259 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * **
90585 CAGAGAAGTGGGTCAAAACA---AAGCGGATCTCAACGTTTTTGAGGTTACA-T
324 CAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACG-TCCTGAGGTTACAGT
* * * * * * * **
90635 AGAGTAGAGTGAAGCACCAGAATCCTA-AGCCCCTAAGTTATAGTGGGTTGGATAAAAATAATCT
1 GGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * *
90699 AGCAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCCCATATTCCTGG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * *
90764 TGAGGTACAGAGAAGTGGG-CTAAAATAGGTAGCAGATCTCAACGTCCTTGAGGTTACAGTGGAG
130 TGAGGTACAGAGAAGTGGGTC-AAAATA--AAGCAGATCTCAACGTCCCTAAGGTTATAATGGAG
* * * * *
90828 TAGAGTGAAGCACTA-AATTTCTATA-CCTCTAAGTTGTAGTGGGTCAGATGAAAATAATGAAGC
192 TGGAGTGAAGCACCAGAA-TCCTATACCCT-TGAGTTGTAGTGGGTCGGATGAAAATAATGAAGC
** * * * *
90891 TGAGCTCAACGTCCCCAAGGTTACAATGGAGTGGAGTGAGACTTCAAATTCCATATTCTTGGTGA
255 TGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGA
* * * * ** * * * *
90956 GGTACAAAGAAGAGGGTCAAAACA--AAATGGATCTCAATGTCTTTGACGTTACAAT
320 GGTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTC-CTGAGGTTACAGT
* * ** * * * *
91011 AGAGTGGAGTGAAGCACCAGAATTCC-ATA-CCTTGATTTGTAGTGGGGCAGATAAAAATAAAGA
1 GGAGTGGAGTGAAGCACCAGAA-TCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * ** * * * * *
91074 AGCAGTGCTCAACGTCCCTGAGGTTACAGTAAAGTGGAGTCAGACTTCACATCCTATCCTCCTAG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * ** * * * *
91139 TCAGGTATAGAGAAGTGGGTCAAAACAAAGTGGATCTCAATGTCCCTGAGGTTACAGTGGAGTGG
130 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTGG
* ** *
91204 AGTGAAGCACCAGAATCCTATACCCTTGAGGT-TATGTGGGTTAGATGAAAATAATGAAGCAGAG
195 AGTGAAGCACCAGAATCCTATACCCTTGAGTTGTA-GTGGGTCGGATGAAAATAATGAAGCTGAG
* * * * * *
91268 CACAACATCCCTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCCAATCTTCTTGGTGAGGTA
259 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * **
91333 TAGAGGAGTGGGTTAAAACAGGTAGCAGATCTTAAATTCCTTGAGGTTACAGT
324 CAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCC-TGAGGTTACAGT
* * * * ** * *
91386 TGAGAGTAGTGAAGCACC-GAAATCTTATACCCTTGAGTTGTAGTGGGTCTGATGAAAATAATAA
1 GGAGTGGAGTGAAGCACCAG-AATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * * * * **
91450 AGTAGAGCTCAACATCCTTGAGGTTATAGTGGAGTGAAGTGAGACTTCAAATCTCATCTTTCTAA
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * * * *
91515 TGAGATAGAGAGAAGTGAGTTAACATAAAG-AGAATCTCAGCATCCTTAAGGTTATAGTGGAGTG
130 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCAG-ATCTCAACGTCCCTAAGGTTATAATGGAGTG
* * ** * *
91579 GAGTGAAGTACCAGAATCCTATACCCCTGAGTTGTAAG-GGGTCAAATGAAAATAAAGAAG-TAT
194 GAGTGAAGCACCAGAATCCTATACCCTTGAGTTGT-AGTGGGTCGGATGAAAATAATGAAGCT-G
* * * * *
91642 AGCTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCGTATTCCTAGTGAGG
257 AGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG
** * * * * * * *
91707 TGTAGAGAACTGAGTCAAAACA---AAGTAGATCTCAACATCAGTAAGGTTACAGT
322 TACAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACGTC-CTGAGGTTACAGT
* * * * * *
91760 -TAGTTGCAGTGAAGAACTAAAATCCTATACCGC-TGAGTTATAGTGGGTCGGATGAAAATAATG
1 GGAG-TGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTACAGTGGGTCGGATGAAAATAATG
* * * * *
91823 AAGCTA-ACCTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACTTCAAATCCGATCTTCCT
64 AAG-TAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
* * * * * * *
91887 AGTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGCAGATCTCAATGTCCCTGAGGTTACAGTGGA
128 GGTGAGGTACAGAGAAGTGGGTCAAAATA--AAGCAGATCTCAACGTCCCTAAGGTTATAATGGA
* * * * * * * *
91952 GTAGAGTAAAGCACTAGATTCCTATA-CCTTTATGTTATAGTGGGTCGGATG-AAATAATAAAGA
191 GTGGAGTGAAGCACCAGAATCCTATACCCTTGA-GTTGTAGTGGGTCGGATGAAAATAATGAAGC
* * * * * * * *
92015 AGAGCTGAACGACCCTGAGGTTACAGCGGAGTGGTGTGAGGCTTTAAATTCCATCTT-CTGGGTG
255 TGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT-GGTG
* * * *
92079 AGGTACAGACATGTGGGTCAAAAC---T------T-T-ATAC-CCCT---G--A-A-T
319 AGGTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCA-ACGTCCTGAGGTTACAGT
* * * * * * * * **
92118 AGAGTAGAGTGAAGTACCAAAATTCTATACCCCTGAATTATAGTGGGTTAGATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * ** ** *
92183 GTAGTGCCCAACGTCCCTGAGGTCATAGTAAAGCAGAGTGAGACTTCAAA-CCCTATCTTCCTAG
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCC-ATCTTCCTGG
* * * * * *
92247 TCAGTTATAGAGAAGTGGGTCAAAATAAAGCGGATCTCAACGTCCCTGAGGTTACAGCA-GG-GT
130 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATA--ATGGAGT
* * * * * *
92310 TGAGTGAAGCACCAAAATCCAATA-CCTCTGAGGTT-TTGTGGGTCAGATGAAAATAATGAAGCA
193 GGAGTGAAGCACCAGAATCCTATACCCT-TGA-GTTGTAGTGGGTCGGATGAAAATAATGAAGCT
* * * ** * * * *
92373 GAGCACAACG-CCTCTAAAGTTATTGTGAAGTAGAGTGAGACTTCAAATCCAATCTTCCTAGTGA
256 GAGCTCAACGTCC-CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGA
* * * * * *
92437 GGTATAGAGGAGTGGGTTAAAACAAGTAACAGATCTCAAAGTCCTTAAGGTTATAGT
320 GGTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCC-TGAGGTTACAGT
** * ** * *
92494 GGAGTTTAGTGAAGTACCAGAATCCTATACCCTTGAGTTGTAGTGGGTTGGATGAAAATAATAAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
*
92559 GTAGAGCTCAACGTCGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCTT
66 GTAGAGCTCAA---CGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
* * * * * * * *
92624 GGTGAGATACAGAGAAGTGAGTTAAAACAAAGCCGATCTCAACGTCTCTAAGGTTATAGTAGAGT
128 GGTGAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGT
* * * * * * *
92689 -GATGTGAAGAACAAGAATCCTGTACCCCTGAGTTGTTGTGGGTCAGATGAAAATAATGAAGCAG
193 GGA-GTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCTG
* * * * * * * *
92753 AGCTCAACGTCTCTAAGGTTATAGTGGAGTGGAGTAAGACTTTAAATCCCATCTTACTAGTAAGG
257 AGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG
* * * * *
92818 TATAGAGAATTGGGTTAAAATAGGTAACATATCTCAAC-TACCCTGAGATTACAGT
322 TACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGT--CCTGAGGTTACAGT
* * *
92873 AGAGTGGAGTGAAGCACCAGAATCCTATACTCC-TGAGTTATAGTGGGTCGAATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * * * * * * * *
92937 AGTTAAAGCTCAAGGTTCTTGAGGTTAAAATGGAGTGGAGTGAGACTTCAAGTCCCATTTTACTA
65 AG-TAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * *
93002 GTGAGGTACAGAGAAGTGGGTTAGAACAGGAAA-TAAATCTCAACGTCCCTAAGGTTATAATGGA
129 GTGAGGTACAGAGAAGTGGGTCA-AA-A-TAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGA
* * * * * ** * * *
93066 GTAGAGTGAAGTACCAGAATCCTATACCTTTAATTTACAGTGGGTCGAAAGAAAATAATGGAG-T
191 GTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT
* * * * * * * *
93130 AGAGCTTAAAGTCTC-GCAGGTTAAAGTGAAGTGGAGTGAGACTTTACATCCCATCTTCCTAGTG
256 -GAGCTCAACGTCCCTG-AGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTG
* *** *
93194 AGGTACAGAGAAGTGGGTCT-AAACA---AAGTAGATCTCAATAACCCTAAGGTTACAGT
319 AGGTACAGAGAAGTGGGT-TAAAACAGGTAA-CAGATCTCAA-CGTCCTGAGGTTACAGT
* * * * * *
93250 GGAATGGAGTGAAGCACAAGAATCTTATGCCCTTGAGTTACAGTGGGTCAGATGAAAATAATAAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * * * * * **
93315 GCATAACTCAATGTCCTTGAAGTTACAGTAGAGTGGAGTGAAACTTTGAATCCCATCTTCCTGGT
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * * *
93380 GAGATATAGAGAAATGGGTTAAAATAGGTAGCAAATCTCAATGTCCCTAAGGTTATAGTGGAGTG
131 GAGGTACAGAGAAGTGGGTCAAAATA--AAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTG
* * * * *
93445 GAGTGAAACATCAGAATCCTATACCCTTGAGTTGCAGTAGGTCGGATG-AAGTAATGAAG-TAGA
194 GAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-GA
* * * *
93508 GCTCAATGTCCCTAAGGTTATAGTGGAGTGGAGTGAGACTTTAAATCCCATC-TCCTTGGTGAGG
258 GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TGGTGAGG
* * * * * *
93572 TACAGGGAAGT-GATCAAAGCA---AAGTAGATCTCAACGTCCTAGAGGTTAAAGT
322 TACAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACGTCCT-GAGGTTACAGT
* * * *
93624 GGAGTGAAGTGAAGCACCAGAATCCTATACCTCTT-AGTTGCTGTCGGTCGGATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * * * *
93688 AGCA-ATGCTCAACGTTCCTGAGGTTACACTGGAGTGGAGAGAGACTTCAAATCACATCTTCCTA
65 AGTAGA-GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * * * * * *
93752 ATGAGGTACAGATAAGTTGGTTAAAATAGGTAGCAGATCTTAACGTCCCTATGGTTATAGTGGAG
129 GTGAGGTACAGAGAAGTGGGTCAAAATA--AAGCAGATCTCAACGTCCCTAAGGTTATAATGGAG
* * * * *
93817 TGGAGTGAAGAACCAGAATTCTATACTCTTAAGTTGTAGTGGGTCGAATGAAAATAATGAAG-TA
192 TGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-
* * *
93881 GAGCTTAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTACTGGTGAG
256 GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * * * * * * *
93946 GTATAAAGAAGTGGGATAAAATATGTGATAGATCTCAACGTTCTTAAGGTTATAGT
321 GTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACG-TCCTGAGGTTACAGT
* * * * * *
94002 GGAGTGGAGTGAAGCATCAAAATCCTATACCCTTGAGTTGCAGTTGGTCGAATG--AATGAATAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAAT-AATGA
* * *
94065 AGTAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCTAATCTCATC-TCCTTG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TG
** * * *
94129 GTGAGGTACAGAGAAGT-GGTCAAAGCATAGCAGATCTCAACGTCCTTGAGGTTA-AAGTGGAGT
129 GTGAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAA-TGGAGT
* * * * * * * * * *
94192 GGAGTGAAGTACCAGAATCTTACACCCCTT-AGTTATAATCGATTGGATAAAAATAATGAA-ATA
193 GGAGTGAAGCACCAGAATCCTATA-CCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-
* * * * * **
94255 GGGCTTAACGTCCTTGAGGTTACAGTGGAGTGGAGCGAGACTTCAAATCCCATCTTCGTAATGAG
256 GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * * * * * *
94320 GTACAGATATGTGGGTTAAAATAGATAAGAAATCTTAACGTCCCTAAGGTTATAGT
321 GTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGT-CCTGAGGTTACAGT
* * * ** ** * * * *
94376 GAAGTGGAGTGAAGTACCAGAACCCTATACTTTTGAGTTGTAGTGGGTCGAATTAAATTAATAAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * * ** *
94441 GTAGAGTTTAACGTCCTTGAGGTTACAGTGGAATGGAGTGAGACTTTAAATCCCATCTTGTTGAT
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * *
94506 GAGGTACAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACGTTCCTACGGTTATAGTAGAGT
131 GAGGTACAGAGAAGTGGGTCAAAATA---AAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGT
* * * * ** * *
94570 GGAGTAAAGCATCAGAATCCTATACCCCTAAGTTACAGTGGGTCGGATGAAAATAATTAAGCAGA
193 GGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCTGA
* ** * * * * * *
94635 ACTTGACGTCCATGAGGTTACAATAGAGTGGAGTTAAACTTCAAATCCAATCTTCCTGGTGAGGT
258 GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
* * * * * * * *
94700 ACAAAGAAGTGGG-TCAAAC---TAA-AGTGGATTTCGACGCCCCTAAGGTTAGAAT
323 ACAGAGAAGTGGGTTAAAACAGGTAACA---GATCTCAACG-TCCTGAGGTTACAGT
* * *** * *
94752 GGAGTGGAATGAAGCACCAGAATCCTATACCCTTTAGTTGTTGTAGGTTGGATGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATG-A
* * * ** * * *
94817 ACT-GAGCTTAATGTCTTTGAGGTTACAATAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * *
94881 TGAGGTACAGAGATGTGGGTCAAAATAGGTAGCAGATTTCAACGTCCCTGAGGTTACAGTGGAGT
130 TGAGGTACAGAGAAGTGGGTCAAAATA--AAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGT
* * * *** * *
94946 GGAGTGAAGCACCAGAATTCTATACCGTTGAGTCT-CAAAAGGTCGAATGAAAATAAAGAAG-TA
193 GGAGTGAAGCACCAGAATCCTATACCCTTGAGT-TGTAGTGGGTCGGATGAAAATAATGAAGCT-
* * * * * * *
95009 GAGCTAAAAGTCCTTGAGGTTAGAATGGAGTAGAGTGAGACTTCAAATCCCATCTTCCTGGTAAG
256 GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * * *
95074 GTACAGAGAACTGGGTCAAAACA---AAGAATATTTCAACGTCACTAAGGTTACAGT
321 GTACAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACGTC-CTGAGGTTACAGT
* * * * * * * *
95128 GGATTGGAGTGAAGAACCAAAATCTTATATCGTTCAGTTGA-AGTGGGTCGGATAAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTT-ACAGTGGGTCGGATGAAAATAATGA
* * * * *
95192 AGCAGAGCTCAACG-CCCTTGAGGTTAAAGTGGAGTGGAGTGAAACTTCAAATCTCATCTTCTTG
65 AGTAGAGCTCAACGTCCC-TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTG
* * * * *
95256 GTGAGGTACAGAGAAGTAGGTTAAAATAAGTAGTAGATCTCAACGTCCCTGAGGTTACT-GTGGA
129 GTGAGGTACAGAGAAGTGGGTCAAAATAA--AGCAGATCTCAACGTCCCTAAGGTTA-TAATGGA
* * * * * ** * ** *
95320 GTAGAGTGAAGTACTAGAATCCTATGCCC-TAAGTTACAGTGGGTCGGATAAAAATAACCAAGCA
191 GTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT
* **
95384 GAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTTTTGGTGAG
256 GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * ** *
95449 GTACAGAGAAGTGAGTCAATACA--AAATGGATCTCAACGTCCCTGAGGTTACAAT
321 GTACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGT-CCTGAGGTTACAGT
* * ** * * ** ** ** *
95503 AGAGTGGAGTGAAGCACCAAAATTTTATACCCCTAAGTTGTAGTGCATTAGTTGAAAATAATGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * * * * * ** * * **
95568 GCATAGCTCAACATCTCTTAGGTTACAATTGAGTGGAGTGAGAGTTCAAATCTTATATTACTAAT
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * * * * *
95633 GAGGTACAAAAAAGTGGGACAAAACAAAGCGGATCTCAACGTCCCTGAGGTTATAGTTGAGTGTA
131 GAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTGGA
* * * * ** *
95698 GTGAAGCACCA-AATCATATACCCCTAAGTTGTAGT-GGTCGGATAAAAATAATGAAGGAGAGAT
196 GTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCTGAGCT
* * *
95761 CAACGTCCTCT-AGGTTACAGTAGAGTGAAGTGAGAGTTCAAATCCCATCTTCCTGGTGAGGTAC
261 CAACGTCC-CTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTAC
* * *
95825 AGAGGAGTGGGTTAAAACAGGTAGCAGATCTCAACGTCCTTGAGGTTACTGT
325 AGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCC-TGAGGTTACAGT
* * * * * *
95877 GGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCAATGGGTTGAATGAAAATAAAGAA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
* * * * *
95942 GTAGAGCTCAACATCCTTGAGGTTATAGTGGAGTTGAGTGAGACTTCAAATCCCATCTTCCTAGT
66 GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * *
96007 GAGGTACAGAGAAGTGAGTCAAAACAAAGC-GTATCTCAACGTCACTAAGGTTATAGTGGATTGG
131 GAGGTACAGAGAAGTGGGTCAAAATAAAGCAG-ATCTCAACGTCCCTAAGGTTATAATGGAGTGG
* *
96071 AGTGAAGCA-CAGAAATTCTATACCAC-TGAGTTGTAGTGGGTTGGATGAAAATAATGAAG-TAG
195 AGTGAAGCACCAG-AATCCTATACC-CTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-G
* * * * * * *
96133 AGCTTAACATCCTTGAGGTTACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTAGTGCGA
257 AGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG
* * * * *
96198 TTCATAGAAGTGGGTTAAAACAAG-AAGCAGATCTCAATGTCTTTGAGGTTACAGT
322 TACAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACGTC-CTGAGGTTACAGT
* * * * * * *
96253 GGAGTAGAGTGAAGTACCAGAATCCTCTACCCCTAAGTTACAGTGGGTCGAATGAAAATAATCCA
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAAT-GA
* * * * * *
96318 A-CAGAGCTCAATGCCCCTGAGGTTATAATGGAGTGGAGTGAGACTTCAAATCCCATCTTCTTGG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * * * **
96382 TGAGGTACAGAGAAGTGGGTCAAAACAAAGC-GTATCTGAATGTCCTTGAGGTTACAATAAAGTG
130 TGAGGTACAGAGAAGTGGGTCAAAATAAAGCAG-ATCTCAACGTCCCTAAGGTTATAATGGAGTG
* * * ** * * *
96446 GAGTGAAGCACTAGAATCCTATACCCCTGAGTTATAGTGTTTTGGATGAAAATAATGAA-ATCAA
194 GAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT-GA
* * * * * * *
96510 GATAAACGACCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTACTTGTGAGGT
258 GCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
* * * ** *
96575 ATAGAGAAGTGGCTTAAAATAGGTAGTAGATCTCAACGTCCTTGAGATTACAGT
323 ACAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCC-TGAGGTTACAGT
* * *
96629 AGAGTGGAGTGAACCACCAGAATCCTATACTCC-TGAGTTACAGTGGGTCGAATGAAAATAATGA
1 GGAGTGGAGTGAAGCACCAGAATCCTATAC-CCTTGAGTTACAGTGGGTCGGATGAAAATAATGA
* * * * * * * * * *
96693 AGTAGAGCTCAAGGTTCCTGAGGTTAAAATGGAGGGGAGTGAGACTTCAAGTCGCATTTTGCTAG
65 AGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGG
* * * * *
96758 TGAGGTACAGAGAAGTGGGTTAGAACCGGT-AA-TAGATCTCAATGTCCCTGAGGTTATAATGGA
130 TGAGGTACAGAGAAGTGGGTCA-AA---ATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGA
** *
96821 GTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGGAG-T
191 GTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCT
* * * * * *
96885 AGAGCTTAACATCCCTCAGGTTAAAGTGGAGTGGAGTGAGACTTTAAATCCCATCTTCCTTGTGA
256 -GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGA
* ** * * *
96950 GGTACAGAGAAGTGGGTTTAAACA---AAGTGGATCTCAATGACCTTAAGGTTACAGT
320 GGTACAGAGAAGTGGGTTAAAACAGGTAA-CAGATCTCAACGTCC-TGAGGTTACAGT
* * * *
97005 GGAATGGAGTGAAGCACCAAAATCTTATACCCCTGAGTT
1 GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTT
97044 GCAGAGTGAG
Statistics
Matches: 6957, Mismatches: 1451, Indels: 496
0.78 0.16 0.06
Matches are distributed among these distances:
356 63 0.01
357 84 0.01
358 124 0.02
359 3 0.00
360 2 0.00
362 1 0.00
365 1 0.00
366 3 0.00
367 5 0.00
368 4 0.00
369 1 0.00
370 2 0.00
371 3 0.00
372 247 0.04
373 368 0.05
374 1395 0.20
375 1223 0.18
376 2192 0.32
377 261 0.04
378 501 0.07
379 447 0.06
380 27 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (375 bp):
GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAAAATAATGAA
GTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
GAGGTACAGAGAAGTGGGTCAAAATAAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTGGA
GTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCTGAGCT
CAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACA
GAGAAGTGGGTTAAAACAGGTAACAGATCTCAACGTCCTGAGGTTACAGT
Found at i:93522 original size:93 final size:92
Alignment explanation
Indices: 93416--94106 Score: 374
Period size: 93 Copynumber: 7.4 Consensus size: 92
93406 GGTAGCAAAT
*
93416 CTCAATGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATCAGAATCCTATACCCTTGAGTTGCA
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATCA-AATCCTATACCCTTGAGTTGCA
*
93481 GTAGGTCGGATGAAGTAATGAAGTAGAG
65 GTAGGTCGGATGAAATAATGAAGTAGAG
* * * * *
93509 CTCAATGTCCCTAAGGTTATAGTGGAGTGGAGTGAGACTTTAAATCCCAT-CTCCTTG-G-TG-A
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATCAAATCCTATAC-CCTTGAGTTGCA
* * ** * *
93570 GGTACAG--GGAAGTGATCAAAGCAAAGTAGAT
65 -GTA-GGTCGGATGAAAT-AATG--AAGTAGAG
* * * *
93601 CTCAACGT-CCTAGAGGTTAAAGTGGAGTGAAGTGAAGCACCAGAATCCTATACCTCTT-AGTTG
1 CTCAACGTCCCTA-AGGTTATAGTGGAGTGGAGTGAAACATCA-AATCCTATACC-CTTGAGTTG
* * *
93664 CTGTCGGTCGGATGAAAATAATGAAGCA-ATG
63 CAGTAGGTCGGATG-AAATAATGAAGTAGA-G
* * * * * * * *
93695 CTCAACGTTCCTGAGGTTACACTGGAGTGGAGAGAGACTTCAAATCAC-AT-CTTCCTAATGAGG
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATCAAATC-CTATAC--CCT--TGAGT
* * * * * * * * *
93758 TACAGATAAGTTGGTTAAAAT-AGGTAGCAGAT
61 TGCAG-TAGGTCGGATGAAATAATGAAGTAGAG
* * * * * * *
93790 CTTAACGTCCCTATGGTTATAGTGGAGTGGAGTGAAGA-ACCAGAATTCTATACTCTTAAGTTGT
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAA-ACATCA-AATCCTATACCCTTGAGTTGC
* *
93854 AGTGGGTCGAATGAAAATAATGAAGTAGAG
64 AGTAGGTCGGATG-AAATAATGAAGTAGAG
* * * * * * * *
93884 CTTAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTTAAATCCCAT-CTTACTGGTGAGGT
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATCAAATCCTATAC--CCT--TGA-GT
** * * * * *
93948 ATAAAG-AAGTGGGATAAAAT-ATG-TGATAGAT
61 -TGCAGTAGGTCGGATGAAATAATGAAG-TAGAG
* * *
93979 CTCAACGTTCTTAAGGTTATAGTGGAGTGGAGTGAAGCATCAAAATCCTATACCCTTGAGTTGCA
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATC-AAATCCTATACCCTTGAGTTGCA
* * *
94044 GTTGGTCGAATG-AATGAATAAAGTAGAG
65 GTAGGTCGGATGAAAT-AATGAAGTAGAG
*
94072 CTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGA
1 CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGA
94107 GACTTCTAAT
Statistics
Matches: 433, Mismatches: 119, Indels: 92
0.67 0.18 0.14
Matches are distributed among these distances:
89 6 0.01
90 8 0.02
91 13 0.03
92 62 0.14
93 114 0.26
94 85 0.20
95 88 0.20
96 37 0.09
97 17 0.04
98 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (92 bp):
CTCAACGTCCCTAAGGTTATAGTGGAGTGGAGTGAAACATCAAATCCTATACCCTTGAGTTGCAG
TAGGTCGGATGAAATAATGAAGTAGAG
Found at i:95965 original size:94 final size:94
Alignment explanation
Indices: 95854--96170 Score: 246
Period size: 94 Copynumber: 3.4 Consensus size: 94
95844 GGTAGCAGAT
*
95854 CTCAACGTCCTTGAGGTTACT-GTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGC
1 CTCAACATCCTTGAGGTTA-TAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGC
95918 AATGGGTTGAATGAAAATAAAGAAGTAGAG
65 AATGGGTTGAATGAAAATAAAGAAGTAGAG
* *
95948 CTCAACATCCTTGAGGTTATAGTGGAGTTGAGTG-AG-ACTTCA-AATCCCAT-CTTCCTAGTGA
1 CTCAACATCCTTGAGGTTATAGTGGAGTGGAGTGAAGCAC-T-AGAATCCTATAC--CCT--TGA
* * * * * * * *
96009 GGTACAGA-GAAG-TGAGTCAAAACAAAG-CGT--AT
60 GTTGCA-ATG-GGTTGAATGAAAATAAAGAAGTAGAG
* * * *
96041 CTCAACGTCAC-TAAGGTTATAGTGGATTGGAGTGAAGCAC-AGAAATTCTATACCAC-TGAGTT
1 CTCAACATC-CTTGAGGTTATAGTGGAGTGGAGTGAAGCACTAG-AATCCTATACC-CTTGAGTT
* * * *
96103 GTAGTGGGTTGGATGAAAATAATGAAGTAGAG
63 GCAATGGGTTGAATGAAAATAAAGAAGTAGAG
* *
96135 CTTAACATCCTTGAGGTTACAGTGGAGTGGAGTGAA
1 CTCAACATCCTTGAGGTTATAGTGGAGTGGAGTGAA
96171 ACTTCAAATC
Statistics
Matches: 167, Mismatches: 34, Indels: 44
0.68 0.14 0.18
Matches are distributed among these distances:
90 1 0.01
91 17 0.10
92 6 0.04
93 42 0.25
94 74 0.44
95 5 0.03
96 20 0.12
97 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (94 bp):
CTCAACATCCTTGAGGTTATAGTGGAGTGGAGTGAAGCACTAGAATCCTATACCCTTGAGTTGCA
ATGGGTTGAATGAAAATAAAGAAGTAGAG
Found at i:97147 original size:128 final size:129
Alignment explanation
Indices: 96918--97172 Score: 347
Period size: 128 Copynumber: 2.0 Consensus size: 129
96908 AAGTGGAGTG
* ** **
96918 GAGTGAGACTTTAAATCCCATCTTCCTTGTGAGGTACAGAGAAGTGGGTTTAAACAAAGTGGATC
1 GAGTGAGACTTCAAATCCCATCTTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATC
* * * *
96983 TCAATGACCTTAAGGTTACAGTGGAATGGAGTGAAGCACCAAAATCTTATACCCCTGAGTTGCA
66 TCAATCACCTCAAGGTTAAAGTGGAATGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTGCA
97047 GAGTGAGACTTCAAATCCCATC-TCCTTGGTGAGGTACAGAGAAGT-GGTCAAAACAAAGCAGAT
1 GAGTGAGACTTCAAATCCCATCTTCCTT-GTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGAT
* * *
97110 CTCAA-CATCC-CAGAGGTTAAAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTTAGTTG
65 CTCAATCA-CCTCA-AGGTTAAAGTGGAATGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTG
97173 TAATCTATCA
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
127 2 0.02
128 71 0.64
129 38 0.34
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (129 bp):
GAGTGAGACTTCAAATCCCATCTTCCTTGTGAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATC
TCAATCACCTCAAGGTTAAAGTGGAATGGAGTGAAGCACCAAAATCCTATACCCCTGAGTTGCA
Found at i:97325 original size:93 final size:93
Alignment explanation
Indices: 97204--97410 Score: 263
Period size: 93 Copynumber: 2.2 Consensus size: 93
97194 TGAAGTAGGG
* * * * *
97204 CTCAACGTCCTTGAGGTTATACTGGAGTGGAGAGAGACTTTAAATCCTATCTTCCTAATAAGGTA
1 CTCAACGTCCATGAGGTTACAGTAGAGTGGAGAGAGACTTTAAATCCTAACTTCCTAATAAGGTA
*
97269 CAAATAAGTGGGTCAAAACAAAGCAGAT
66 CAAAGAAGTGGGTCAAAACAAAGCAGAT
* * * * *
97297 CTTAATGTCTC-TGAGGTTACAGTAGAGTGGAGTGAGACTTTAAATCCTAACTTCCTAGTGAGGT
1 CTCAACGTC-CATGAGGTTACAGTAGAGTGGAGAGAGACTTTAAATCCTAACTTCCTAATAAGGT
** * *
97361 ACTGAGAAGTGGGTCAAAATAAAGCGGAT
65 ACAAAGAAGTGGGTCAAAACAAAGCAGAT
97390 CTCAACGTCCATGAGGTTACA
1 CTCAACGTCCATGAGGTTACA
97411 ACGAAGTGGA
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
92 1 0.01
93 94 0.98
94 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (93 bp):
CTCAACGTCCATGAGGTTACAGTAGAGTGGAGAGAGACTTTAAATCCTAACTTCCTAATAAGGTA
CAAAGAAGTGGGTCAAAACAAAGCAGAT
Found at i:97968 original size:93 final size:92
Alignment explanation
Indices: 97672--98356 Score: 412
Period size: 92 Copynumber: 7.4 Consensus size: 92
97662 TGAAGATAAG
* * * * *
97672 CTCAACATCCCTAAGGTTACAGTAGAGTGAAGTGGGACTTCAATTCCTATCTTCTTAGTGAGGTA
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAGACTT-AAATCCTATCTTCCTAGTGAGGTA
* ** *
97737 CAGAGAAGTGGGTTAAAACAGGTAGCAAAT
65 CAGAGAAGTGGGTCAAAACA-AAAG-GAAT
* * ** * *
97767 CTCAAC--CTC-GAGGTTACAGTGGAGTGGAGTGAAGCACCAAAATCCTATAC-CCCTA---AGT
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTG-AG-ACTTAAATCCTAT-CTTCCTAGTGAGG
* * ** * * *
97825 TACAGTG-GGTCGAATGAAAATAAAGAAGTTG-AG
63 TACAGAGAAGT-GGGTCAAAA-CAA-AAG--GAAT
* * * * * * *
97858 CTCAACATCCTTGAGGTTATAGTGGAGTTGAGTGAGACATCAAATCCCATCTTCCTGGTGAGGTA
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAGAC-TTAAATCCTATCTTCCTAGTGAGGTA
97923 CAGAGAAGTGGGTCAAAACAAAAGGAAT
65 CAGAGAAGTGGGTCAAAACAAAAGGAAT
* * ** * ** *
97951 CTCAACATCCCTAAGGTTACAATAGAGTGGAGTGAAGCACCAAAATTCTATCCCCCTGAGT--TG
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTG-AG-ACTTAAATCCTATCTTCCT-AGTGAGG
* * * * * * *
98014 T--AGA-AGGTTAGATGAAAATAATAAAGTAGAG
63 TACAGAGAAG-TGGGTCAAAA-CA-AAAGGA-AT
* * *
98045 CTCAACGTCCCTGAGGTTACAGTAGAGTGTAGTGAGACTTTAAATCCTATCTTCCAAGTGAGGTA
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAGAC-TTAAATCCTATCTTCCTAGTGAGGTA
* * * *
98110 TAGAAAAGTAGGTAAAAACAAAATGG-AT
65 CAGAGAAGTGGGTCAAAACAAAA-GGAAT
* * * * * * * *
98138 CTTAACGTCCTTAAGGTTACAATAGAGTGGGGTGTGACTTTAATCCTATCTTCCTAGTGAGGTAC
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTAAATCCTATCTTCCTAGTGAGGTAC
* * *
98203 AAAGAAGTGGGTCAAAACAAAATGAGT
66 AGAGAAGTGGGTCAAAACAAAAGGAAT
* ** * * *
98230 CTTAATGTCCCTTAGGTTACAGTAGAGTGGGGTGAGACTTTAATCCTATCTTCCTAGTGAGGTAC
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTAAATCCTATCTTCCTAGTGAGGTAC
*
98295 AGAGAAGTGGGTCAAAAC-AAAGTGGAT
66 AGAGAAGTGGGTCAAAACAAAAG-GAAT
** *
98322 CTCAACATCCCTGAGGTTGTAATAGAGTGGAGTGA
1 CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGA
98357 AGCACCAGAA
Statistics
Matches: 447, Mismatches: 110, Indels: 69
0.71 0.18 0.11
Matches are distributed among these distances:
89 2 0.00
90 16 0.04
91 24 0.05
92 178 0.40
93 109 0.24
94 75 0.17
95 14 0.03
96 25 0.06
97 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (92 bp):
CTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAGACTTAAATCCTATCTTCCTAGTGAGGTAC
AGAGAAGTGGGTCAAAACAAAAGGAAT
Found at i:98033 original size:187 final size:188
Alignment explanation
Indices: 97308--100552 Score: 2666
Period size: 189 Copynumber: 17.4 Consensus size: 188
97298 TTAATGTCTC
* * * * *
97308 TGAGGTTACAGTAGAGTGGAGTGAGACTTTAAATCCTAACTTCCTAGTGAGGTACTGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * * * *
97373 GTCAAAA-TAAAGCGGATCTCAACGTCCATGAGGTTACAA-CGAAGTGGAGTGAAGCACCAGAAT
66 GTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTACAATAG-AGTGGAGTGAAGCACCAGAAT
** * * *
97436 CCTATACCCCTGAGTTACAGT-GGTCGGATGAAAATAATAAAGCAGAGCTCAATGTCCT
130 CCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * ** * *
97494 TTAGGTTACAGTTGAGTGGAGTGAGACTTCAAATCTAATCTTCCTGGTGAGGTACAAAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
** * * * * * * * * * *
97559 GTTAAAACATGTAGCAAATCTCAA-AGTTCTTAAGGTTAGAGTGGAGTGTAGTAAAGTACCAGAA
66 GTTAAAACA-AAAGCGAATCTCAACA-TCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAA
* * * * * * *
97623 TTCTATACGCCTGAGTTGTAGTCA-ATCAAATGAAAATAATGAAG-ATAAGCTCAACATCCC
129 TCCTATACCCCTGAGTTGTAGT-AGGTCAGATGAAAATAATGAAGCA-GAGCTCAACGTCCT
* * * * * * *
97683 TAAGGTTACAGTAGAGTGAAGTGGGACTTCAATTCCTATCTTCTTAGTGAGGTACAGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
** * * * * *
97748 GTTAAAACAGGTAGCAAATCTCAAC--CTC-GAGGTTACAGTGGAGTGGAGTGAAGCACCAAAAT
66 GTTAAAACA-AAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAAT
* ** * * ** *
97810 CCTATACCCCTAAGTTACAGTGGGTC-GAATGAAAATAAAGAAGTTGAGCTCAACATCCT
130 CCTATACCCCTGAGTTGTAGTAGGTCAG-ATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * *
97869 TGAGGTTATAGTGGAGTTGAGTGAGACATCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * *
97934 GTCAAAACAAAAG-GAATCTCAACATCCCTAAGGTTACAATAGAGTGGAGTGAAGCACCAAAATT
66 GTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATC
* * * * * *
97998 CTATCCCCCTGAGTTGTAGAAGGTTAGATGAAAATAATAAAGTAGAGCTCAACGTCCC
131 CTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * * * *
98056 TGAGGTTACAGTAGAGTGTAGTGAGACTTTAAATCCTATCTTCCAAGTGAGGTATAGAAAAGTAG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * * * * * ***
98121 GTAAAAACAAAATG-G-ATCTTAACGTCCTTAAGGTTACAATAGAGTGGGGTG-TG-ACTTTAAT
66 GTTAAAACAAAA-GCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAAT
* * ** * * * * * * *
98182 CCTAT-CTTCCT-AGTGAGGTACAAAGAAGT-GGGTCAAAACAA--AATG-AG-TCTTAATGTCC
130 CCTATAC-CCCTGAGT--TGTA-GTAG--GTCAGATGAAAATAATGAA-GCAGAGCTCAACGT-C
98240 CT
187 CT
* * * *
98242 T-AGGTTACAGTAGAGTGGGGTGAGACTT-TAATCCTATCTTCCTAGTGAGGTACAGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * **
98305 GTCAAAAC-AAAGTGGATCTCAACATCCCTGAGGTTGTAATAGAGTGGAGTGAAGCACCAGAATC
66 GTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATC
*
98369 CTATACCCTTGAGTTGTAGT-GGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
131 CTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * *
98426 TTAGGTTACAGTGGAGTGGAGTTAGACTTCAAAACCAATCTTCCTAGTGAGGTACAGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * * * * * * *
98491 GTTAAAATAAGTAGCAAATCTCAA-AGTTCCTAAGGTTACAATGGAGTGTAGTGAAGCACTAAAA
66 GTTAAAACAA-AAGCGAATCTCAACA-TCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAA
* * * * * ** *
98555 TCCTATACCCTTGAGTTGTAGTCGATTAGATGAAAATAATGAAG-ATAAGCTCAACACCCC
129 TCCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCA-GAGCTCAACGTCCT
* * * * *
98615 TAAGGTTACAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTACCGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* ** * * * *
98680 TTTAAAACAGGTAGC-AGATCTCAACGTCCCTGAGGTTACACTGGAGTAGAGTGAAGCACCAGAA
66 GTTAAAACA-AAAGCGA-ATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAA
* ** * * * * *
98744 TCCTATACCCCTAAGTTACAGTGGGTCAAATGAAAATAAAGAAGTAGAGCTCAACATCCT
129 TCCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * *
98804 TGAGGTTATAGTGGAGTAGAGTGAGACTTCAAATCCCATCTTCCTAATGAGGTATAGAGAAGTGA
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * ** * * * * * ** *
98869 G-TAAAAGAAAAAC-AGATCTCAATGTCACTAAGGTTACAGTGGATTGGAGTGAAGCATGAAAAT
66 GTTAAAACAAAAGCGA-ATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAAT
** * * * * *
98932 CCTATACCGTTGAGTTGTAGTAGATCGGATGAAAATAATGAAGCACAGATCAATGTCCT
130 CCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * *
98991 TGAGGTTACAGTGGAGTGAAGTGAAACTTCAAATCCCATCTTCTTGGTGAGGTACATAGAAGTGA
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * ** * * *
99056 GTTATAACAGGAAGAAAATCTCAACGTCCTTGAGGTTAC-------------GAAGCACTAGAAT
66 GTTAAAACA-AAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAAT
* * * * ** * *
99108 CTTATACCCCTAAGTTGCAGT-GTGTTAGATGAAAATAATCTAGCAGAGCTCAATGTTCT
130 CCTATACCCCTGAGTTGTAGTAG-GTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * *
99167 TGAGGTTACAGTGGAGTGAAGTAAGACTTCAAATCTCATCATCCTGGTGAGGTACAAAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * *
99232 GTCAAAAC-AAAGC-AGATCTCAACGTTCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAAAAT
66 GTTAAAACAAAAGCGA-ATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAAT
* * * * * * * *
99295 TCTATAGCCCCTAAGTTGTAGTGGGTTAAATAAAAATAATGAAGCAGAGCTCAACATCCC
130 CCTATA-CCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * * *
99355 TGAGCTTACAGTAGAGTGGAGTAAGACTTCAAATCCTATCTTCCAATTGAGGTACATAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * * * * * *
99420 GTCAAAAC-AAAGTGGATTTCAACGTCCCTAAGGTTACAACAAAGTGGAGTGAAGCACCAGAATC
66 GTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATC
*** ** * * *
99484 CTATACTTATGAGTTACAGTGGGTC-GAAT-AAAATAATGAAGCAGAGGTCAACGTCCC
131 CTATACCCCTGAGTTGTAGTAGGTCAG-ATGAAAATAATGAAGCAGAGCTCAACGTCCT
* *
99541 TAAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATTCTTCCTAGTGAGGTACAAAGAAGTG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA-TCTTCCTAGTGAGGTACAGAGAAGTG
* * ** * * * * *
99605 AGTTAAAATAGGTAGCAAATCTCAA-AGTCCCTAAGGTTACAGTGGAGTGTAGTGAAGCACCAGA
65 GGTTAAAACA-AAAGCGAATCTCAACA-TCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGA
* * * * * ** * *
99669 ATCCTATACTCCTGAGTTGTAGTGGGTCGGATGAAATTAATAAATTAGAGCTCAACATCCC
128 ATCCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * *
99730 TGAGGTTACAGTGGAGTGGAGTGAGA-TAGCAAATCTCATCTTCTTGGTGAGATATAGAGAAGTG
1 TGAGGTTACAGTGGAGTGGAGTGAGACT-TCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTG
* * * *
99794 AGTTAAAAC-AAAGTGGATCTCAACATCCCTGAGGTT-CTAGTAGAGTGGAGTGAAGCACCAGAA
65 GGTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTAC-AATAGAGTGGAGTGAAGCACCAGAA
* * * * * *
99857 TCTTATACCCTTGAGTTTTAGTAGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCC
129 TCCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * * * *
99917 TAAGGTTACGGTGGATTGGAGTAATACTTCAAATCTCATCCTGCTAGTGAGGTACAGAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* ** * * * * * * * *
99982 GTTAAAATAGGTAGTGGATCAT-AACATCCTTGAGGTTATACTAGAGTGGAGTGAAGAACTAAAA
66 GTTAAAACA-AAAGCGAATC-TCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAA
* * * * * *
100046 TCCTATACCCCTAAGTTATTGTGGGTCAGATGAAAATAATAAAGGAGAGCTCAACGTCCT
129 TCCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * *
100106 TGAGGTGTTATAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCTTGGTAAGGTATAGAGAAGT
1 TGA-G-GTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGT
* * * ** *
100171 GGGTCAAAACAAAA-CGTATCTCAACATCCTTGAGGCCACAATGGAGTGGAGTGAAGCACCAGAA
64 GGGTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAA
* *
100235 TCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
129 TCCTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * * * *
100295 TGAGGTTATAGTAGAGTAGAGTGAGACTTAAAATCCCATCTCCCTGGTGATGTACAAAGAAGTGG
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
* * * * *
100360 GTTAAAACAGGAAGC-AGATCTCAACATCCCTGAGATTACAGTAGAGTGGAGTGAAACACTAGAA
66 GTTAAAACA-AAAGCGA-ATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAA
* * *
100424 TCCTATACCCCTGAGTTATAGTAGGTC-GAATGAAAATAATGAAGTAGAGCTCAACGTTCT
129 TCCTATACCCCTGAGTTGTAGTAGGTCAG-ATGAAAATAATGAAGCAGAGCTCAACGTCCT
* * * * * * *
100484 TAAGGTTACAGTGGAATGGAGTGAGACTTCAAGTCTCATCTTGCTGGTGAGGTACAGAGAAGTGA
1 TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
100549 GTTA
66 GTTA
100553 GAATTGGTAA
Statistics
Matches: 2457, Mismatches: 512, Indels: 177
0.78 0.16 0.06
Matches are distributed among these distances:
173 1 0.00
174 23 0.01
175 1 0.00
176 118 0.05
181 2 0.00
182 9 0.00
183 6 0.00
184 87 0.04
185 81 0.03
186 345 0.14
187 565 0.23
188 371 0.15
189 785 0.32
190 7 0.00
191 56 0.02
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (188 bp):
TGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTAGTGAGGTACAGAGAAGTGG
GTTAAAACAAAAGCGAATCTCAACATCCCTGAGGTTACAATAGAGTGGAGTGAAGCACCAGAATC
CTATACCCCTGAGTTGTAGTAGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCT
Found at i:98969 original size:376 final size:374
Alignment explanation
Indices: 97289--100597 Score: 2740
Period size: 376 Copynumber: 8.9 Consensus size: 374
97279 GGTCAAAACA
* * * * * * * *
97289 AAGCAGATCTTAATGTCTCTGAGGTTACAGTAGAGTGGAGTGAGACTTTAAATCCTAACTTCCTA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
* * * * * *
97354 GTGAGGTACTGAGAAGTGGG-TCAAAATAAAGCGGATCTCAACGTCCATGAGGTTACAACGAAGT
66 GTGAGGTACAGAGAAGTGGGTTAAAAAGAAAGCAGATCTCAACGTCC-TGAGGTTACAATGGAGT
* * ** *
97418 GGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGT-GGTCGGATGAAAATAATAAAGCA-G
130 GGAGTGAAGCA-TAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAG-ATG
* * * **
97481 AGCTCAATGTCCTTTAGGTTACAGTTGAGTGGAGTGAGACTTCAAATCTAATCTTCCTGGTGAGG
193 AGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG
* * * * * * * * * * *
97546 TACAAAGAAGTGGGTTAAAACATGTAGCAAATCTCAAAGTTCTTAAGGTTAGAGTGGAGTGTAGT
258 TACAGAGAAGTGGGTTAAAACAAGTAG-AGATCTCAACGTCCCTGAGGTTACAATAGAGTGGAGT
* * * * * *** *
97611 AAAGTACCAGAATTCTATACGCCTGAGTTGTAGTCAATCAAATGAAAATAATG
322 GAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * * * * * *
97664 AAG-ATAAGCTCAACATCCCTAAGGTTACAGTAGAGTGAAGTGGGACTTCAATTCCTATCTTCTT
1 AAGCA-GAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
** * * *
97728 AGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAAATCTCAACCT-C-GAGGTTACAGTGGAG
65 AGTGAGGTACAGAGAAGTGGGTTAAAA-AGAAAGCAGATCTCAACGTCCTGAGGTTACAATGGAG
* * ** * * *
97791 TGGAGTGAAGCACCAAAATCCTATACCCCTAAGTTACAGTGGGTCGAATGAAAATAAAGAAGTTG
129 TGGAGTGAAGCA-TAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGATG
* * * *
97856 AGCTCAACATCCTTGAGGTTATAGTGGAGTTGAGTGAGACATCAAATCCCATCTTCCTGGTGAGG
193 AGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG
* * * *
97921 TACAGAGAAGTGGGTCAAAACAA-AAG-GAATCTCAACATCCCTAAGGTTACAATAGAGTGGAGT
258 TACAGAGAAGTGGGTTAAAACAAGTAGAG-ATCTCAACGTCCCTGAGGTTACAATAGAGTGGAGT
* * * * ** * *
97984 GAAGCACCAAAATTCTATCCCCCTGAGTTGTAGAAGGTTAGATGAAAATAATA
322 GAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * * *
98037 AAGTAGAGCTCAACGTCCCTGAGGTTACAGTAGAGTGTAGTGAGACTTTAAATCCTATCTTCCAA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
* * * * *** * * *
98102 GTGAGGTATAGAAAAGTAGG-TAAAAACAAAATGGATCTTAACGTCCTTAAGGTTACAATAGAGT
66 GTGAGGTACAGAGAAGTGGGTTAAAAAGAAAGCAGATCTCAACGTCC-TGAGGTTACAATGGAGT
* * ** * * ** * * * *
98166 GGGGTG-TG-ACTTTAATCCTAT-CTTCCT-AGTGAGGTACAAAGAAGT-GGGTCAAAA-CA--A
130 GGAGTGAAGCA-TAAAATCCTATAC-CCCTGAGT--TGT--AGTG-GGTCGGATGAAAATAATGA
* * * * * *
98223 A-ATGAGTCTTAATGTCCCTT-AGGTTACAGTAGAGTGGGGTGAGACTT-TAATCCTATCTTCCT
188 AGATGAG-CTCAACGT-CCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCT
* * * **
98285 AGTGAGGTACAGAGAAGTGGGTCAAAACAAAGT-G-GATCTCAACATCCCTGAGGTTGTAATAGA
251 GGTGAGGTACAGAGAAGTGGGTTAAAAC-AAGTAGAGATCTCAACGTCCCTGAGGTTACAATAGA
* *
98348 GTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGT-GGTCAGATGAAAATAATG
315 GTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * *
98407 AAGCAGAGCTCAACGTCCTTTAGGTTACAGTGGAGTGGAGTTAGACTTCAAAACCAATCTTCCTA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
* * * *
98472 GTGAGGTACAGAGAAGTGGGTTAAAATA-AGTAGCAAATCTCAAAGTTCCTAAGGTTACAATGGA
66 GTGAGGTACAGAGAAGTGGGTTAAAA-AGA-AAGCAGATCTCAACG-TCCTGAGGTTACAATGGA
* * * * **
98536 GTGTAGTGAAGCACTAAAATCCTATACCCTTGAGTTGTAGTCGATTAGATGAAAATAATGAAGAT
128 GTGGAGTGAAGCA-TAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGAT
* ** * * * *
98601 AAGCTCAACACCCCTAAGGTTACAGTAGAGTGAAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
192 GAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * * *
98666 GTACCGAGAAGTGGTTTAAAACAGGTAGCAGATCTCAACGTCCCTGAGGTTACACTGGAGTAGAG
257 GTACAGAGAAGTGGGTTAAAACAAGTAG-AGATCTCAACGTCCCTGAGGTTACAATAGAGTGGAG
* * * *
98731 TGAAGCACCAGAATCCTATACCCCTAAGTTACAGTGGGTCAAATGAAAATAAAG
321 TGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * *
98785 AAGTAGAGCTCAACATCCTTGAGGTTATAGTGGAGTAGAGTGAGACTTCAAATCCCATCTTCCTA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
* * * * * * * *
98850 ATGAGGTATAGAGAAGTGAG-T-AAAAGAAAAACAGATCTCAATGTCACTAAGGTTACAGTGGAT
66 GTGAGGTACAGAGAAGTGGGTTAAAAAG-AAAGCAGATCTCAACGTC-CTGAGGTTACAATGGAG
** * *
98913 TGGAGTGAAGCATGAAAATCCTATACCGTTGAGTTGTAGTAGATCGGATGAAAATAATGAAGCA-
129 TGGAGTGAAGCAT-AAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAG-AT
* * * * * *
98977 CAGATCAATGTCCTTGAGGTTACAGTGGAGTGAAGTGAAACTTCAAATCCCATCTTCTTGGTGAG
192 GAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * * * *
99042 GTACATAGAAGTGAGTTATAACAGGAAGAAAATCTCAACGTCCTTGAGGTTAC------------
257 GTACAGAGAAGTGGGTTAAAACAAGTAG-AGATCTCAACGTCCCTGAGGTTACAATAGAGTGGAG
* * * * * *
99095 -GAAGCACTAGAATCTTATACCCCTAAGTTGCAGTGTGTTAGATGAAAATAATC
321 TGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * * * * * *
99148 TAGCAGAGCTCAATGTTCTTGAGGTTACAGTGGAGTGAAGTAAGACTTCAAATCTCATCATCCTG
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
* * * *
99213 GTGAGGTACAAAGAAGTGGG-TCAAAACAAAGCAGATCTCAACGTTCCTGAGGTTACAATAGAGT
66 GTGAGGTACAGAGAAGTGGGTTAAAAAGAAAGCAGATCTCAACG-TCCTGAGGTTACAATGGAGT
* * * *** *
99277 GGAGTGAAGCACCAAAATTCTATAGCCCCTAAGTTGTAGTGGGTTAAATAAAAATAATGAAGCA-
130 GGAGTGAAGCA-TAAAATCCTATA-CCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAG-AT
* * * * * * ***
99341 GAGCTCAACATCCCTGAGCTTACAGTAGAGTGGAGTAAGACTTCAAATCCTATCTTCCAATTGAG
192 GAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * * * * *
99406 GTACATAGAAGTGGGTCAAAACAAAGT-G-GATTTCAACGTCCCTAAGGTTACAACAAAGTGGAG
257 GTACAGAGAAGTGGGTTAAAAC-AAGTAGAGATCTCAACGTCCCTGAGGTTACAATAGAGTGGAG
*** *
99469 TGAAGCACCAGAATCCTATACTTATGAGTTACAGTGGGTC-GAAT-AAAATAATG
321 TGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAG-ATGAAAATAATG
* *
99522 AAGCAGAGGTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT-CCATTCTTCCT
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCA-TCTTCCT
* * ** * * * *
99586 AGTGAGGTACAAAGAAGTGAGTTAAAATAGGTAGCAAATCTCAAAGTCCCTAAGGTTACAGTGGA
65 AGTGAGGTACAGAGAAGTGGGTTAAAA-AGAAAGCAGATCTCAACGT-CCTGAGGTTACAATGGA
* * * * *
99651 GTGTAGTGAAGCACCAGAATCCTATACTCCTGAGTTGTAGTGGGTCGGATGAAATTAAT-AA-AT
128 GTGGAGTGAAGCA-TAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGA-
* * * * *
99714 TAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGTGAGA-TAGCAAATCTCATCTTCTTGGT
191 T-GAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACT-TCAAATCCCATCTTCCTGGT
* * * * *
99778 GAGATATAGAGAAGTGAGTTAAAACAAAGT-G-GATCTCAACATCCCTGAGGTT-CTAGTAGAGT
254 GAGGTACAGAGAAGTGGGTTAAAAC-AAGTAGAGATCTCAACGTCCCTGAGGTTAC-AATAGAGT
* * ** * *
99840 GGAGTGAAGCACCAGAATCTTATACCCTTGAGTTTTAGTAGGTCGGATGAAAATAATG
317 GGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * * * * * *
99898 AAGTAGAGCTCAACGTCCCTAAGGTTACGGTGGATTGGAGTAATACTTCAAATCTCATCCTGCTA
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
** ** * * * *
99963 GTGAGGTACAGAGAAGTGGGTTAAAATAGGTAGTGGATCAT-AACATCCTTGAGGTTATACTAGA
66 GTGAGGTACAGAGAAGTGGGTTAAAA-AGAAAGCAGATC-TCAACGTCC-TGAGGTTACAATGGA
* * * * * *
100027 GTGGAGTGAAGAACTAAAATCCTATACCCCTAAGTTATTGTGGGTCAGATGAAAATAATAAAGGA
128 GTGGAGTGAAGCA-TAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAA-GA
* *
100092 -GAGCTCAACGTCCTTGAGGTGTTATAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCTTGGT
191 TGAGCTCAACGTCCTTGA-G-GTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGT
* * * * * ** *
100156 AAGGTATAGAGAAGTGGGTCAAAACAA--A-ACGTATCTCAACATCCTTGAGGCCACAATGGAGT
254 GAGGTACAGAGAAGTGGGTTAAAACAAGTAGA-G-ATCTCAACGTCCCTGAGGTTACAATAGAGT
100218 GGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
317 GGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
* * * * * * *
100276 AAGCAGAGCTCAACGTCCTTGAGGTTATAGTAGAGTAGAGTGAGACTTAAAATCCCATCTCCCTG
1 AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
* * * * * * *
100341 GTGATGTACAAAGAAGTGGGTTAAAACAGGAAGCAGATCTCAACATCCCTGAGATTACAGTAGAG
66 GTGAGGTACAGAGAAGTGGGTTAAAA-AGAAAGCAGATCTCAACGT-CCTGAGGTTACAATGGAG
* * * * *
100406 TGGAGTGAAACACTAGAATCCTATACCCCTGAGTTATAGTAGGTCGAATGAAAATAATGAAG-TA
129 TGGAGTGAAGCA-TAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGAT-
* * * * * *
100470 GAGCTCAACGTTCTTAAGGTTACAGTGGAATGGAGTGAGACTTCAAGTCTCATCTTGCTGGTGAG
192 GAGCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAG
* * *** * * * *
100535 GTACAGAGAAGTGAGTTAGAATTGGTAATAGATCTCAACGTCCCTAAGGTTACAGTGGAGTGG
257 GTACAGAGAAGTGGGTTAAAACAAGT-AGAGATCTCAACGTCCCTGAGGTTACAATAGAGTGG
100598 CTTGAGACTT
Statistics
Matches: 2364, Mismatches: 474, Indels: 189
0.78 0.16 0.06
Matches are distributed among these distances:
362 19 0.01
363 164 0.07
364 106 0.04
365 2 0.00
370 89 0.04
371 132 0.06
372 83 0.04
373 155 0.07
374 203 0.09
375 425 0.18
376 472 0.20
377 88 0.04
378 418 0.18
379 7 0.00
380 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (374 bp):
AAGCAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTA
GTGAGGTACAGAGAAGTGGGTTAAAAAGAAAGCAGATCTCAACGTCCTGAGGTTACAATGGAGTG
GAGTGAAGCATAAAATCCTATACCCCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGATGAGC
TCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTAC
AGAGAAGTGGGTTAAAACAAGTAGAGATCTCAACGTCCCTGAGGTTACAATAGAGTGGAGTGAAG
CACCAGAATCCTATACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATG
Found at i:99937 original size:94 final size:94
Alignment explanation
Indices: 99632--99938 Score: 249
Period size: 94 Copynumber: 3.3 Consensus size: 94
99622 AATCTCAAAG
* * * *
99632 TCCCTAAGGTTACAGTGGAGTGTAGTGAAGCACCAGAATCCTATACTCC-TGAGTTGTAGTGGGT
1 TCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCTTATACTCCTTGAGTTATAGTAGGT
* *
99696 CGGATGAAATTAATAAATTAGAGCTCAACA
66 CGGATGAAAATAAT-AAGTAGAGCTCAACA
* * * * * *
99726 TCCCTGAGGTTACAGTGGAGTGGAGTG-AGATAGCA-AATCTCAT-CTTCTTGGTGAGATATAG-
1 TCCCTAAGGTTACAGTGGAGTGGAGTGAAG-CACCAGAATCTTATAC-TCCT--TGAGTTATAGT
* * * *
99787 AGAAGT--GAGTTAAAA-CA-AAGTGGATCTCAACA
62 AG--GTCGGA-TGAAAATAATAAGTAGAGCTCAACA
* * *
99819 TCCCTGAGGTT-CTAGTAGAGTGGAGTGAAGCACCAGAATCTTATAC-CCTTGAGTTTTAGTAGG
1 TCCCTAAGGTTAC-AGTGGAGTGGAGTGAAGCACCAGAATCTTATACTCCTTGAGTTATAGTAGG
*
99882 TCGGATGAAAATAATGAAGTAGAGCTCAACG
65 TCGGATGAAAATAAT-AAGTAGAGCTCAACA
* *
99913 TCCCTAAGGTTACGGTGGATTGGAGT
1 TCCCTAAGGTTACAGTGGAGTGGAGT
99939 AATACTTCAA
Statistics
Matches: 162, Mismatches: 32, Indels: 38
0.70 0.14 0.16
Matches are distributed among these distances:
90 2 0.01
91 13 0.08
92 7 0.04
93 51 0.31
94 69 0.43
95 6 0.04
96 12 0.07
97 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (94 bp):
TCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCTTATACTCCTTGAGTTATAGTAGGT
CGGATGAAAATAATAAGTAGAGCTCAACA
Found at i:100318 original size:94 final size:93
Alignment explanation
Indices: 100190--100507 Score: 241
Period size: 94 Copynumber: 3.4 Consensus size: 93
100180 CAAAACGTAT
* ** * * *
100190 CTCAACATCCTTGAGGCCACAATGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCA
1 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGCA
100255 GTGGGTCAGATGAAAATAATGAAGCAGAG
66 GTGGGTC-GATGAAAATAATGAAGCAGAG
* * * *
100284 CTCAACGTCCTTGAGGTTATAGTAGAGTAGAGTG-AG-ACTTAAAATCCCAT-CTCCCTG-GTGA
1 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAGCAC-TAGAATCCTATAC-CCCTGAGT--
** * * * * * * *
100345 TGTACAAAGAAGTGGGTTAAAA-CAGGAAGCAGAT
62 TG--CAGTG-GGTCGATGAAAATAATGAAGCAGAG
* * * * **
100379 CTCAACATCCCTGAGATTACAGTAGAGTGGAGTGAAACACTAGAATCCTATACCCCTGAGTTATA
1 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGCA
* *
100444 GTAGGTCGAATGAAAATAATGAAGTAGAG
66 GTGGGTCG-ATGAAAATAATGAAGCAGAG
* * * *
100473 CTCAACGTTCTTAAGGTTACAGTGGAATGGAGTGA
1 CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGA
100508 GACTTCAAGT
Statistics
Matches: 164, Mismatches: 47, Indels: 26
0.69 0.20 0.11
Matches are distributed among these distances:
92 8 0.05
93 21 0.13
94 65 0.40
95 39 0.24
96 24 0.15
97 7 0.04
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (93 bp):
CTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAGCACTAGAATCCTATACCCCTGAGTTGCA
GTGGGTCGATGAAAATAATGAAGCAGAG
Found at i:100691 original size:282 final size:283
Alignment explanation
Indices: 100341--100868 Score: 724
Period size: 282 Copynumber: 1.9 Consensus size: 283
100331 CATCTCCCTG
* * *
100341 GTGATGTACAAAGAAGTGGGTTAAAACAGGAAGCAGATCTCAACATCCCTGAGATTACAGTAGAG
1 GTGAGGTACAAAGAAGTGGGTCAAAACA-GAAGCAGATCTCAACATCCCTAAGATTACAGTAGAG
* *
100406 TGGAGTGAAA-CACTAGAATCCTATACCCCTGAGTTATAGTAGGTCGAATGAAAATAATGAAGTA
65 TGGAGT-AAAGCACCAGAATCCTATACCCCTGAGTTATAGTAGGTCGAATGAAAATAATGAAGCA
* * * * *
100470 GAGCTCAACGTTCTTAAGGTTACAGTGGAA-TGGAGTGAGACTTCAAGTCTC-ATCTTGCTGGTG
129 GAACTCAACGTCCTTAAGGTTACAGT-GAAGTGGAGTGAGACTTCAAATC-CAATATTCCTGGTG
* * * *
100533 AGGTACAGAGAAGT-GAGTTAGAATTGGTAATAGATCTCAACGTCCCTAAGGTTACAGTGGAGTG
192 AGGTACAGAGAAGTAG-GTTAAAATAGGTAACAGATCTCAAAGTCCCTAAGGTTACAGTGGAGTG
100597 GCTTGAGACTTCAAATCCTATTTTCCCA
256 GCTTGAGACTTCAAATCCTATTTTCCCA
* * * * *
100625 GTGAGGTACAGAGAAGTGGGTCAAAACA-AAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGT
1 GTGAGGTACAAAGAAGTGGGTCAAAACAGAAGCAGATCTCAACATCCCTAAGATTACAGTAGAGT
* * * *
100689 GGAGTAAAGCACCAGAATCCTATACCTCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCAGA
66 GGAGTAAAGCACCAGAATCCTATACCCCTGAGTTATAGTAGGTCGAATGAAAATAATGAAGCAGA
* *
100754 ACTCAACGTCCTTGAGGTTATAGTGAAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAGGT
131 ACTCAACGTCCTTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAGGT
* * *
100819 ATAGAGAAGTAGGTTAAAATAGGTAGCAGATCTCAAAGTCCCTGAGGTTA
196 ACAGAGAAGTAGGTTAAAATAGGTAACAGATCTCAAAGTCCCTAAGGTTA
100869 TAGTCTAGTG
Statistics
Matches: 212, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
281 7 0.03
282 179 0.84
283 1 0.00
284 25 0.12
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (283 bp):
GTGAGGTACAAAGAAGTGGGTCAAAACAGAAGCAGATCTCAACATCCCTAAGATTACAGTAGAGT
GGAGTAAAGCACCAGAATCCTATACCCCTGAGTTATAGTAGGTCGAATGAAAATAATGAAGCAGA
ACTCAACGTCCTTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAGGT
ACAGAGAAGTAGGTTAAAATAGGTAACAGATCTCAAAGTCCCTAAGGTTACAGTGGAGTGGCTTG
AGACTTCAAATCCTATTTTCCCA
Found at i:100818 original size:187 final size:188
Alignment explanation
Indices: 100568--101673 Score: 972
Period size: 187 Copynumber: 5.9 Consensus size: 188
100558 GGTAATAGAT
* ** * * **
100568 CTCAACGTCCCTAAGGTTACAGTGGAGTGGCTTGAGACTTCAAATCCTATTTTCCCAGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
*
100633 CAGAGAAGTGGGTCAAAACA-AAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTAAA
66 CAGAGAAGTGGGTCAAAACAGAAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGAA
* *
100697 GCACCAGAATCCTATACCTCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCAGAA
131 GCACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAG
* * * * *
100755 CTCAACGTCCTTGAGGTTATAGTGAAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * * * * * * ** *
100820 TAGAGAAGTAGGTTAAAATAGGTAGCAGATCTCAAAGTCCCTGAGGTTATAGTCTAGTGTAGTGA
66 CAGAGAAGTGGGTCAAAACA-GAAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGA
* * * * * * *
100885 AACACCAGAATCCTATATCCT-TGAATTACATTGGATCGGATGAAAATAATAAAGTAGAG
130 AGCACCAGAATCCTATA-CCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAG
* * * * *
100944 CTTAACGTCCCTGAGGTTACAGTGGAGTGGTGGGAGACTTTAAATCCCATCTTCCTGGTAAGGTA
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
* * * * * * *
101009 CAGAGAAGTGAGTCTAAACAAAATG--GATCTCAATGACCTTGAGGTTACAGTGGAATGGAGTGA
66 CAGAGAAGTGGGTCAAAACAGAA-GCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGA
* * * *
101072 AGCACCAGAATCCTATACGCT-TGACTTACAGTGGGTCAGATGAAAATAATGAAGCATAG
130 AGCACCAGAATCCTATAC-CTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAG
* * * * *
101131 CTCAACGTCCTTGAGGATAC-GATGGAGTGGAGTGAGACTTCAAATCCCATGTTGCTGGTGAAGT
1 CTCAACGTCCCTGAGGTTACAG-TGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGT
** * * * * * * * *
101195 GGAGTGAAGTAGGTTAAAATAGGTAGCAAATCTCAATC-TCCTAAAGGTTACAGCGGAGTGGAGT
65 ACAGAGAAGTGGGTCAAAACA-GAAGCAGATCTCAA-CGTCCTTAAGGTTACAGTGGAGTGGAGT
* * * * *
101259 GAAGCATCAGAATCCTATACC-CTTGAGTTGCAATAGGTCGGATG-AAGTAATGAAGTAGAG
128 GAAGCACCAGAATCCTATACCTC-TGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAG
* * * * * *
101319 CTCGACATCCCTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCTCATC-TCCTTAGTGAGGT
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCC-TGGTGAGGT
* * * * * * * *
101383 ACAGAGAAAT-GGTTAATACA-AAGTAGATCTCAACGT-CTCTGAGGTTACAATAGAGTGCAGTG
65 ACAGAGAAGTGGGTCAAAACAGAAGCAGATCTCAACGTCCT-TAAGGTTACAGTGGAGTGGAGTG
* * *
101445 AAGCACCA-AATCCTATACCCCTTACCCCCTTAGTTGCAGTGGATCGGATTAAAATAATGAAGCA
129 AAGCACCAGAATCCTATA--CC-T-----CTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCA
*
101509 GAT
186 GAG
* * * **
101512 CTCAAAGTCCCTGAGGTTACAGTGGAGTGGAGTGAAACTTCAAAACCTGTCTTCC---TGAGGTT
1 CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGG-T
* * ** * *
101574 ATAGTGAAGTGGGTCAAAACAGGTGGCAGATCTCAGCGTCCTTAAGGTTACAGTGGAGTGGGGTG
65 ACAGAGAAGTGGGTCAAAACA-GAAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTG
* *
101639 AAGCACCAG-ATCTTATATCC-CTAATGTTGCAGTGG
129 AAGCACCAGAATCCTATA-CCTCTGA-GTTGCAGTGG
101674 ATCTAATCCA
Statistics
Matches: 721, Mismatches: 164, Indels: 68
0.76 0.17 0.07
Matches are distributed among these distances:
184 12 0.02
185 35 0.05
186 7 0.01
187 236 0.33
188 70 0.10
189 214 0.30
190 8 0.01
191 8 0.01
192 24 0.03
193 57 0.08
194 48 0.07
195 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (188 bp):
CTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCTGGTGAGGTA
CAGAGAAGTGGGTCAAAACAGAAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGAA
GCACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAG
Found at i:100872 original size:95 final size:93
Alignment explanation
Indices: 100275--100868 Score: 302
Period size: 95 Copynumber: 6.3 Consensus size: 93
100265 TGAAAATAAT
* * * * * * * *
100275 GAAGCAGAGCTCAACGTCCTTGAGGTTATAGT-AGAGTAGAGTGAGACTTAAAATCCCATCTCCC
1 GAAGCAGATCTCAACGTCCCTAAGGTTACAGTGA-AGTGGAGTGAGACTTCAAAT-CCATATTCC
* * *
100339 TGGTGATGTACAAAGAAGTGGGTTAAAACAG
64 TGGTGAGGTACAGAGAAGT-GGTTAAAATAG
* * * * * *
100370 GAAGCAGATCTCAACATCCCTGAGATTACAGT-AGAGTGGAGTGAAAC-ACTAGAATCC-TATAC
1 GAAGCAGATCTCAACGTCCCTAAGGTTACAGTGA-AGTGGAGTGAGACTTC-A-AATCCATATTC
** * * * * *
100432 C-CCTGAGTTATAGTAG--GTCGAATGAAAATAAT
63 CTGGTGAGGTACAG-AGAAGT-G-GTTAAAAT-AG
* * * * * * *
100464 GAAGTAGAGCTCAACGTTCTTAAGGTTACAGTGGAA-TGGAGTGAGACTTCAAGTCTCATCTTGC
1 GAAGCAGATCTCAACGTCCCTAAGGTTACAGT-GAAGTGGAGTGAGACTTCAAATC-CATATTCC
* *
100528 TGGTGAGGTACAGAGAAGTGAGTTAGAATTG
64 TGGTGAGGTACAGAGAAGTG-GTTAAAATAG
* * ** *
100559 GTAA-TAGATCTCAACGTCCCTAAGGTTACAGTGGAGTGGCTTGAGACTTCAAATCCTATTTTCC
1 G-AAGCAGATCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAATCC-ATATTCC
** * *
100623 CAGTGAGGTACAGAGAAGTGGGTCAAAACA-
64 TGGTGAGGTACAGAGAAGT-GGTTAAAATAG
* * * *
100653 -AAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTAAAGCAC--CAGAATCC-TATAC
1 GAAGCAGATCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGT-GAG-ACTTCA-AATCCATATTC
* * ** * * * *
100714 CT-CTGAGTTGTAGTG-GGTCGGATGAAAATAAT
63 CTGGTGAGGTACAGAGAAGT-GG-TTAAAAT-AG
* * * *
100746 GAAGCAGAACTCAACGTCCTTGAGGTTATAGTGAAGTGGAGTGAGACTTCAAATCCAATATTCCT
1 GAAGCAGATCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAATCC-ATATTCCT
*
100811 GGTGAGGTATAGAGAAGTAGGTTAAAATAG
65 GGTGAGGTACAGAGAAGT-GGTTAAAATAG
* * *
100841 GTAGCAGATCTCAAAGTCCCTGAGGTTA
1 GAAGCAGATCTCAACGTCCCTAAGGTTA
100869 TAGTCTAGTG
Statistics
Matches: 374, Mismatches: 94, Indels: 62
0.71 0.18 0.12
Matches are distributed among these distances:
90 4 0.01
91 13 0.03
92 12 0.03
93 57 0.15
94 93 0.25
95 152 0.41
96 37 0.10
97 6 0.02
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (93 bp):
GAAGCAGATCTCAACGTCCCTAAGGTTACAGTGAAGTGGAGTGAGACTTCAAATCCATATTCCTG
GTGAGGTACAGAGAAGTGGTTAAAATAG
Found at i:101010 original size:471 final size:471
Alignment explanation
Indices: 100112--101021 Score: 1243
Period size: 471 Copynumber: 1.9 Consensus size: 471
100102 TCCTTGAGGT
* *** *
100112 GTTATAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCTTGGTAAGGTATAGAGAAGTGGGTCA
1 GTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCCAGTAAGGTACAGAGAAGTGGGTCA
* *
100177 AAACAAAACGTATCTCAACATCCTTGAGGCCACAATGGAGTGGAGTGAAGCACCAGAATCCTATA
66 AAACAAAACGTATCTCAACATCCTTAAGGCCACAATGGAGTGGAGTAAAGCACCAGAATCCTATA
*
100242 CCCCTGAGTTGCAGTGGGTCAGATGAAAATAATGAAGCAGAGCTCAACGTCCTTGAGGTTATAGT
131 CCCCTGAGTTGCAGTGGGTCAGATGAAAATAATGAAGCAGAACTCAACGTCCTTGAGGTTATAGT
* * * *
100307 AGAGTAGAGTGAGACTTAAAATCCCATCTCCCTGGTGATGTACAAAGAAGTGGGTTAAAACAGGA
196 AGAGTAGAGTGAGACTTAAAATCCAATATCCCTGGTGAGGTACAAAGAAGTAGGTTAAAACAGGA
*
100372 AGCAGATCTCAACATCCCTGAGATTACAGTAGAGTGGAGTGAAACACTAGAATCCTATACCCCTG
261 AGCAGATCTCAACATCCCTGAGATTACAGTAGAGTGGAGTGAAACACCAGAATCCTATACCCCTG
* * * * *
100437 AGTTATAGTAGGTCGAATGAAAATAATGAAGTAGAGCTCAACGTTCTTAAGGTTACAGTGGAATG
326 AATTACAGTAGGTCGAATGAAAATAATAAAGTAGAGCTCAACGTCCCTAAGGTTACAGTGGAATG
* * * * *
100502 GAGTGAGACTTCAAGTCTCATCTTGCTGGTGAGGTACAGAGAAGTGAGTTAGAATTGGTAATAGA
391 GAGGGAGACTTCAAATCCCATCTTCCTGGTAAGGTACAGAGAAGTGAGTTAGAATTGGTAATAGA
100567 TCTCAACGTCCCTAAG
456 TCTCAACGTCCCTAAG
** * * *
100583 GTTACAGTGGAGTGGCTTGAGACTTCAAATCCTATTTTCCCAGTGAGGTACAGAGAAGTGGGTCA
1 GTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCCAGTAAGGTACAGAGAAGTGGGTCA
* * ** *
100648 AAACAAAGCAG-ATCTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTAAAGCACCAGAATCCTAT
66 AAACAAAAC-GTATCTCAACATCCTTAAGGCCACAATGGAGTGGAGTAAAGCACCAGAATCCTAT
* * *
100712 ACCTCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCAGAACTCAACGTCCTTGAGGTTATAG
130 ACCCCTGAGTTGCAGTGGGTCAGATGAAAATAATGAAGCAGAACTCAACGTCCTTGAGGTTATAG
* * * * * *
100777 T-GAAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAGGTATAGAGAAGTAGGTTAAAATAG
195 TAG-AGTAGAGTGAGACTTAAAATCCAATATCCCTGGTGAGGTACAAAGAAGTAGGTTAAAACAG
* * * ** * *
100841 GTAGCAGATCTCAA-AGTCCCTGAGGTTATAGTCTAGTGTAGTGAAACACCAGAATCCTATATCC
259 GAAGCAGATCTCAACA-TCCCTGAGATTACAGTAGAGTGGAGTGAAACACCAGAATCCTATACCC
* * * * *
100905 TTGAATTACA-TTGGATCGGATGAAAATAATAAAGTAGAGCTTAACGTCCCTGAGGTTACAGTGG
323 CTGAATTACAGTAGG-TCGAATGAAAATAATAAAGTAGAGCTCAACGTCCCTAAGGTTACAGTGG
* * *
100969 AGTGGTGGGAGACTTTAAATCCCATCTTCCTGGTAAGGTACAGAGAAGTGAGT
387 AATGGAGGGAGACTTCAAATCCCATCTTCCTGGTAAGGTACAGAGAAGTGAGT
101022 CTAAACAAAA
Statistics
Matches: 378, Mismatches: 57, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
470 5 0.01
471 372 0.98
472 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (471 bp):
GTTACAGTGGAGTGGAGTGAGACTTCAAATCCCATCTTCCCAGTAAGGTACAGAGAAGTGGGTCA
AAACAAAACGTATCTCAACATCCTTAAGGCCACAATGGAGTGGAGTAAAGCACCAGAATCCTATA
CCCCTGAGTTGCAGTGGGTCAGATGAAAATAATGAAGCAGAACTCAACGTCCTTGAGGTTATAGT
AGAGTAGAGTGAGACTTAAAATCCAATATCCCTGGTGAGGTACAAAGAAGTAGGTTAAAACAGGA
AGCAGATCTCAACATCCCTGAGATTACAGTAGAGTGGAGTGAAACACCAGAATCCTATACCCCTG
AATTACAGTAGGTCGAATGAAAATAATAAAGTAGAGCTCAACGTCCCTAAGGTTACAGTGGAATG
GAGGGAGACTTCAAATCCCATCTTCCTGGTAAGGTACAGAGAAGTGAGTTAGAATTGGTAATAGA
TCTCAACGTCCCTAAG
Found at i:101082 original size:376 final size:373
Alignment explanation
Indices: 100563--101555 Score: 1126
Period size: 376 Copynumber: 2.6 Consensus size: 373
100553 GAATTGGTAA
* * * *
100563 TAGATCTCAACGTCCCTAAGGTTACAGTGGAGTGGCT-TGAGACTTCAAATCCTATTTTCCCAGT
1 TAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGG-TGTGAGACTTCAAATCCCATCTTCCTAGT
* * *
100627 GAGGTACAGAGAAGTGGGTCAAAACAAAGCAGATCTCAACGTCCTTAAGGTTACAGTGGAGTGGA
65 GAGGTACAGAGAAGT-GGTCTAAACAAAGTAGATCTCAACG-CCTTGAGGTTACAGTGGAGTGGA
* *
100692 GTAAAGCACCAGAATCCTATACCTCTGAGTTGTAGTGGGTCGGATGAAAATAATGAAGCAGAACT
128 GTGAAGCACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAACT
* * *
100757 CAACGTCCTTGAGGTTATAGTGAAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAGGTATA
193 CAACGTCCTTGAGGTTATAGTGGAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAAGTAGA
* * * * *
100822 GAGAAGTAGGTTAAAATAGGTAGCAGATCTCAAAGTC-CCT-GAGGTTATAGTC-TAGTGTAGTG
258 GAGAAGTAGGTTAAAATAGGTAGCAAATCTC-AA-TCTCCTAAAGGTTACAG-CGGAGTGGAGTG
* *
100884 AAACACCAGAATCCTATATCCTTGAATTAC-ATTGGATCGGATGAAAATAATAAAG
320 AAACACCAGAATCCTATACCCTTGAATTACAATAGG-TCGGATG-AAATAATAAAG
* * * * * *
100939 TAGAGCTTAACGTCCCTGAGGTTACAGTGGAGTGGTGGGAGACTTTAAATCCCATCTTCCTGGTA
1 TAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATCTTCCTAGTG
* * * *
101004 AGGTACAGAGAAGTGAGTCTAAACAAAATGGATCTCAATGACCTTGAGGTTACAGTGGAATGGAG
66 AGGTACAGAGAAGTG-GTCTAAACAAAGTAGATCTCAACG-CCTTGAGGTTACAGTGGAGTGGAG
* * * * *
101069 TGAAGCACCAGAATCCTATACGCT-TGACTTACAGTGGGTCAGATGAAAATAATGAAGCATAGCT
129 TGAAGCACCAGAATCCTATAC-CTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAACT
* * * *
101133 CAACGTCCTTGAGG--ATACGATGGAGTGGAGTGAGACTTCAAATCCCATGTTGCTGGTGAAGTG
193 CAACGTCCTTGAGGTTATA-G-TGGAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAAGTA
*
101196 GAGTGAAGTAGGTTAAAATAGGTAGCAAATCTCAATCTCCTAAAGGTTACAGCGGAGTGGAGTGA
256 GAGAGAAGTAGGTTAAAATAGGTAGCAAATCTCAATCTCCTAAAGGTTACAGCGGAGTGGAGTGA
* * * * * *
101261 AGCATCAGAATCCTATACCCTTGAGTTGCAATAGGTCGGATGAAGTAATGAAG
321 AACACCAGAATCCTATACCCTTGAATTACAATAGGTCGGATGAAATAATAAAG
* * * * *
101314 TAGAGCTCGACATCCCTAAGGTTACAGTGGAGTAGAGTGAGACTTCAAATCTCATC-TCCTTAGT
1 TAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATCTTCC-TAGT
* * * * *
101378 GAGGTACAGAGAAATGGT-TAATACAAAGTAGATCTCAACGTCTCTGAGGTTACAATAGAGTGCA
65 GAGGTACAGAGAAGTGGTCTAA-ACAAAGTAGATCTCAACGCCT-TGAGGTTACAGTGGAGTGGA
* * *
101442 GTGAAGCACCA-AATCCTATACCCCTTACCCCCTTAGTTGCAGTGGATCGGATTAAAATAATGAA
128 GTGAAGCACCAGAATCCTATA--CC-T-----CTGAGTTGCAGTGGGTCGGATGAAAATAATGAA
* * * * *
101506 GCAGATCTCAAAGTCCCTGAGGTTACAGTGGAGTGGAGTGAAACTTCAAA
185 GCAGAACTCAACGTCCTTGAGGTTATAGTGGAGTGGAGTGAGACTTCAAA
101556 ACCTGTCTTC
Statistics
Matches: 516, Mismatches: 78, Indels: 41
0.81 0.12 0.06
Matches are distributed among these distances:
373 14 0.03
374 53 0.10
375 84 0.16
376 291 0.56
377 6 0.01
381 65 0.13
382 1 0.00
383 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (373 bp):
TAGAGCTCAACGTCCCTAAGGTTACAGTGGAGTGGTGTGAGACTTCAAATCCCATCTTCCTAGTG
AGGTACAGAGAAGTGGTCTAAACAAAGTAGATCTCAACGCCTTGAGGTTACAGTGGAGTGGAGTG
AAGCACCAGAATCCTATACCTCTGAGTTGCAGTGGGTCGGATGAAAATAATGAAGCAGAACTCAA
CGTCCTTGAGGTTATAGTGGAGTGGAGTGAGACTTCAAATCCAATATTCCTGGTGAAGTAGAGAG
AAGTAGGTTAAAATAGGTAGCAAATCTCAATCTCCTAAAGGTTACAGCGGAGTGGAGTGAAACAC
CAGAATCCTATACCCTTGAATTACAATAGGTCGGATGAAATAATAAAG
Found at i:101997 original size:123 final size:122
Alignment explanation
Indices: 101784--102239 Score: 502
Period size: 123 Copynumber: 3.7 Consensus size: 122
101774 TATTAAAGTC
* * *
101784 ATCCAATCTCTTACCTCGACCATGGGGAAGATTGAAGACATTATCCAATCTCTTACCCCGACCAT
1 ATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAG-C--CATCCAATCTCTTACCCCGACCAT
* * * *
101849 GGGGTAGATTGAAG-C--CATTCAATCTCTTACCCTAACCATGGGGCAAATTGAATACATT
63 GAGGCAGATTGAAGACATCATCCAATCTCTTACCCTAACCATGAGGCAAATTGAATACA-T
* * * *
101907 ATCCAATCTCTTACCCCGACCATGAGGTAGATTAAAGCCATCCAATCTCTTATCCCGACAATGAG
1 ATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAG
* * * * *
101972 GCAGACTGAAGACATCATCCAATCTCTTACCCTGACCATGAGG-ATGATTGAAGAGAT
66 GCAGATTGAAGACATCATCCAATCTCTTACCCTAACCATGAGGCA-AATTGAATACAT
* * * *
102029 CATCCAATCTCTTACCCCGACCATGGGGCAA-ATTGTAGCCATCCAATCTCTTACCTCGACTATG
1 -ATCCAATCTCTTACCCCGACCATGAGG-AAGATTGAAGCCATCCAATCTCTTACCCCGACCATG
* *
102093 GGGCAGATTAAAGACATCATCCAATCTCTTACCCTAACCATGAGGCAAATTGAAGT-C--
64 AGGCAGATTGAAGACATCATCCAATCTCTTACCCTAACCATGAGGCAAATTGAA-TACAT
* * *
102150 ATCCAATCTCTTACCCCGATCACGAGGAAGATTGAAGACATCAGTCAATCTCTTACCCCGACCAT
1 ATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGCCATC---CAATCTCTTACCCCGACCAT
*
102215 GAGGCAGATCGAAG-C--CATCCAATCT
63 GAGGCAGATTGAAGACATCATCCAATCT
102240 TTTGCCCCTA
Statistics
Matches: 281, Mismatches: 40, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
119 2 0.01
120 76 0.27
121 1 0.00
122 4 0.01
123 196 0.70
124 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (122 bp):
ATCCAATCTCTTACCCCGACCATGAGGAAGATTGAAGCCATCCAATCTCTTACCCCGACCATGAG
GCAGATTGAAGACATCATCCAATCTCTTACCCTAACCATGAGGCAAATTGAATACAT
Found at i:102135 original size:204 final size:204
Alignment explanation
Indices: 101782--102239 Score: 588
Period size: 204 Copynumber: 2.3 Consensus size: 204
101772 CATATTAAAG
* *
101782 TCATCCAATCTCTTA-CCTCGACCATGGGGAAGATTGAAGACATTATCCAATCTCTTACCCCGAC
1 TCATCCAATCTCTTACCCT-GACCATGAGGAAGATTGAAGACATCATCCAATCTCTTACCCCGAC
* * * * * *
101846 CATGGGGTAGATTGAAGCCATTCAATCTCTTACCCTAACCATGGGGCAAATTGAATACATTATCC
65 CATGGGGCAAATTGAAGCCATCCAATCTCTTACCCTAACCATGGGGCAAATTAAAGACATCATCC
* * * * * *
101911 AATCTCTTACCCCGACCATGAGGTAGATTAAAGCCATCCAATCTCTTATCCCGA-CAATGAGGCA
130 AATCTCTTACCCCAACCATGAGGCAAATTAAAGCCATCCAATCTCTTACCCCGATC-ACGAGGAA
101975 GACTGAAGACA
194 GACTGAAGACA
* *
101986 TCATCCAATCTCTTACCCTGACCATGAGGATGATTGAAGAGATCATCCAATCTCTTACCCCGACC
1 TCATCCAATCTCTTACCCTGACCATGAGGAAGATTGAAGACATCATCCAATCTCTTACCCCGACC
* * * *
102051 ATGGGGCAAATTGTAGCCATCCAATCTCTTA-CCTCGACTATGGGGCAGATTAAAGACATCATCC
66 ATGGGGCAAATTGAAGCCATCCAATCTCTTACCCT-AACCATGGGGCAAATTAAAGACATCATCC
* * *
102115 AATCTCTTACCCTAACCATGAGGCAAATTGAAGTCATCCAATCTCTTACCCCGATCACGAGGAAG
130 AATCTCTTACCCCAACCATGAGGCAAATTAAAGCCATCCAATCTCTTACCCCGATCACGAGGAAG
*
102180 ATTGAAGACA
195 ACTGAAGACA
* * *
102190 TCAGT-CAATCTCTTACCCCGACCATGAGGCAGATCGAAG-C--CATCCAATCT
1 TCA-TCCAATCTCTTACCCTGACCATGAGGAAGATTGAAGACATCATCCAATCT
102240 TTTGCCCCTA
Statistics
Matches: 221, Mismatches: 29, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
201 10 0.05
203 3 0.01
204 203 0.92
205 5 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (204 bp):
TCATCCAATCTCTTACCCTGACCATGAGGAAGATTGAAGACATCATCCAATCTCTTACCCCGACC
ATGGGGCAAATTGAAGCCATCCAATCTCTTACCCTAACCATGGGGCAAATTAAAGACATCATCCA
ATCTCTTACCCCAACCATGAGGCAAATTAAAGCCATCCAATCTCTTACCCCGATCACGAGGAAGA
CTGAAGACA
Found at i:102216 original size:81 final size:80
Alignment explanation
Indices: 101782--102239 Score: 433
Period size: 81 Copynumber: 5.6 Consensus size: 80
101772 CATATTAAAG
* * *
101782 TCATCCAATCTCTTACCTCGACCATG-GGGAAGATTGAAGACATTATCCAATCTCTTACCCCGAC
1 TCAT-CAATCTCTTACCCCGACCATGAGGCAA-ATTGAAG---TCATCCAATCTCTTACCCCGAC
* * *
101846 CATGGGGTAGATTGAAGCCA
61 CATGAGGAAGATTGAAGACA
** *
101866 T--TCAATCTCTTACCCTAACCATGGGGCAAATTGAA-TACATTATCCAATCTCTTACCCCGACC
1 TCATCAATCTCTTACCCCGACCATGAGGCAAATTGAAGT-C---ATCCAATCTCTTACCCCGACC
* * *
101928 ATGAGGTAGATTAAAGCCA
62 ATGAGGAAGATTGAAGACA
* * * * *
101947 TC--CAATCTCTTATCCCGACAATGAGGCAGACTGAAGACATCATCCAATCTCTTACCCTGACCA
1 TCATCAATCTCTTACCCCGACCATGAGGCAAATTGAAG---TCATCCAATCTCTTACCCCGACCA
* *
102010 TGAGGATGATTGAAGAGA
63 TGAGGAAGATTGAAGACA
* * * * *
102028 TCATCCAATCTCTTACCCCGACCATGGGGCAAATTGTAGCCATCCAATCTCTTACCTCGACTATG
1 TCAT-CAATCTCTTACCCCGACCATGAGGCAAATTGAAGTCATCCAATCTCTTACCCCGACCATG
* * *
102093 GGGCAGATTAAAGACA
65 AGGAAGATTGAAGACA
** * *
102109 TCATCCAATCTCTTACCCTAACCATGAGGCAAATTGAAGTCATCCAATCTCTTACCCCGATCACG
1 TCAT-CAATCTCTTACCCCGACCATGAGGCAAATTGAAGTCATCCAATCTCTTACCCCGACCATG
102174 AGGAAGATTGAAGACA
65 AGGAAGATTGAAGACA
* * *
102190 TCAGTCAATCTCTTACCCCGACCATGAGGCAGATCGAAGCCATCCAATCT
1 TCA-TCAATCTCTTACCCCGACCATGAGGCAAATTGAAGTCATCCAATCT
102240 TTTGCCCCTA
Statistics
Matches: 308, Mismatches: 52, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
77 1 0.00
81 270 0.88
82 6 0.02
84 30 0.10
85 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (80 bp):
TCATCAATCTCTTACCCCGACCATGAGGCAAATTGAAGTCATCCAATCTCTTACCCCGACCATGA
GGAAGATTGAAGACA
Found at i:106040 original size:24 final size:24
Alignment explanation
Indices: 106010--106171 Score: 225
Period size: 24 Copynumber: 6.8 Consensus size: 24
106000 GGCTTATAAA
*
106010 AGCTAACCATTTTGGGCTCGTAAG
1 AGCTAACCATTCTGGGCTCGTAAG
* *
106034 AGTTAACCATTCTGAGCTCGTAAG
1 AGCTAACCATTCTGGGCTCGTAAG
106058 AGCTAACCATTCTGGGCTCGTAAG
1 AGCTAACCATTCTGGGCTCGTAAG
* *
106082 AGCTAATCATTTTGGGCTCGTAAG
1 AGCTAACCATTCTGGGCTCGTAAG
*
106106 AGCTAACCATTCTGAGCTCGTAAG
1 AGCTAACCATTCTGGGCTCGTAAG
** *
106130 AGCTAGTCATTCTAGGCTCGTAAG
1 AGCTAACCATTCTGGGCTCGTAAG
* *
106154 AGCTAATCATTCTAGGCT
1 AGCTAACCATTCTGGGCT
106172 GGTGTGGGCT
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 123 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCTAACCATTCTGGGCTCGTAAG
Found at i:106127 original size:72 final size:72
Alignment explanation
Indices: 105996--106164 Score: 266
Period size: 72 Copynumber: 2.3 Consensus size: 72
105986 TTAAACTCTG
** * * *
105996 TCTAGGCTTATAAAAGCTAACCATTTTGGGCTCGTAAGAGTTAACCATTCTGAGCTCGTAAGAGC
1 TCTAGGCTCGTAAGAGCTAATCATTTTGGGCTCGTAAGAGCTAACCATTCTGAGCTCGTAAGAGC
106061 TAACCAT
66 TAACCAT
*
106068 TCTGGGCTCGTAAGAGCTAATCATTTTGGGCTCGTAAGAGCTAACCATTCTGAGCTCGTAAGAGC
1 TCTAGGCTCGTAAGAGCTAATCATTTTGGGCTCGTAAGAGCTAACCATTCTGAGCTCGTAAGAGC
**
106133 TAGTCAT
66 TAACCAT
106140 TCTAGGCTCGTAAGAGCTAATCATT
1 TCTAGGCTCGTAAGAGCTAATCATT
106165 CTAGGCTGGT
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 88 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (72 bp):
TCTAGGCTCGTAAGAGCTAATCATTTTGGGCTCGTAAGAGCTAACCATTCTGAGCTCGTAAGAGC
TAACCAT
Found at i:111609 original size:25 final size:25
Alignment explanation
Indices: 111559--111610 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
111549 GTGTGGCCCA
*
111559 AAATCAAATGACCCAAACCAAGCCC
1 AAATCAAATGACCCAAACCAAACCC
*
111584 AAATCAAATG-CCCAAGCCATAACCC
1 AAATCAAATGACCCAAACCA-AACCC
111609 AA
1 AA
111611 TTTGCAACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.48, C:0.35, G:0.08, T:0.10
Consensus pattern (25 bp):
AAATCAAATGACCCAAACCAAACCC
Found at i:111708 original size:13 final size:13
Alignment explanation
Indices: 111682--111722 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
111672 ACCTAAACCA
*
111682 TTGATCGTTGACT
1 TTGACCGTTGACT
* *
111695 TTGGCCGTTAACT
1 TTGACCGTTGACT
111708 TTGACCGTTGACT
1 TTGACCGTTGACT
111721 TT
1 TT
111723 TATTATCAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.44
Consensus pattern (13 bp):
TTGACCGTTGACT
Found at i:118872 original size:15 final size:16
Alignment explanation
Indices: 118846--118877 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
118836 CCTCTTTTCC
118846 TTCTTTTCCATTTCAT
1 TTCTTTTCCATTTCAT
118862 TTCTTTT-CATTTCAT
1 TTCTTTTCCATTTCAT
118877 T
1 T
118878 ATATGCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (16 bp):
TTCTTTTCCATTTCAT
Found at i:123219 original size:29 final size:26
Alignment explanation
Indices: 123187--123247 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
123177 TTATCTATTA
*
123187 TTATTTTATGTGATTTGAATATTTTGTAT
1 TTATTTAATGTGA-TTG-ATATTTT-TAT
* *
123216 TTATTTAATTTTATTGATATTTTTAT
1 TTATTTAATGTGATTGATATTTTTAT
123242 TTATTT
1 TTATTT
123248 GCATGATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.31
27 7 0.24
28 3 0.10
29 10 0.34
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (26 bp):
TTATTTAATGTGATTGATATTTTTAT
Found at i:123410 original size:6 final size:6
Alignment explanation
Indices: 123393--123449 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
123383 TTGTTAAAAT
* *
123393 TTTAAA -TTAAA TTTAAA TTT-AT TTTAAA TTT-AA TTTAAA TTT-AT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
123437 TTTCAAA TTTAAA
1 TTT-AAA TTTAAA
123450 ATTATTATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 18 0.43
6 20 0.48
7 4 0.10
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:123416 original size:22 final size:22
Alignment explanation
Indices: 123359--123445 Score: 99
Period size: 22 Copynumber: 3.9 Consensus size: 22
123349 CAAACTCCCC
123359 TTTAAATTTATTTTAAGATTAAA
1 TTTAAATTTATTTTAA-ATTAAA
123382 TTTGTTAAA---ATTTTAAATTAAA
1 --T-TTAAATTTATTTTAAATTAAA
*
123404 TTTAAATTTATTTTAAATTTAA
1 TTTAAATTTATTTTAAATTAAA
123426 TTTAAATTTATTTTCAAATT
1 TTTAAATTTATTTT-AAATT
123446 TAAAATTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
19 5 0.09
20 1 0.02
22 32 0.57
23 12 0.21
25 1 0.02
26 5 0.09
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTAAATTTATTTTAAATTAAA
Found at i:123444 original size:12 final size:11
Alignment explanation
Indices: 123391--123447 Score: 78
Period size: 11 Copynumber: 5.1 Consensus size: 11
123381 ATTTGTTAAA
*
123391 ATTTTAAATTA
1 ATTTTAAATTT
*
123402 AATTTAAATTT
1 ATTTTAAATTT
123413 ATTTTAAATTT
1 ATTTTAAATTT
*
123424 AATTTAAATTT
1 ATTTTAAATTT
123435 ATTTTCAAATTT
1 ATTTT-AAATTT
123447 A
1 A
123448 AAATTATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
11 33 0.82
12 7 0.17
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTTAAATTT
Found at i:123463 original size:17 final size:18
Alignment explanation
Indices: 123424--123465 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
123414 TTTTAAATTT
* *
123424 AATTTAAATTTATTTTCA
1 AATTTAAAATTATTATCA
123442 AATTTAAAATTATTAT-A
1 AATTTAAAATTATTATCA
123459 AATTTAA
1 AATTTAA
123466 GATAAAGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTAAAATTATTATCA
Done.