Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012191.1 Kokia drynarioides strain JFW-HI SEQ_127192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21597
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Found at i:3276 original size:13 final size:13
Alignment explanation
Indices: 3257--3295 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
3247 ATTGATAACT
3257 GTATTAATAATTA
1 GTATTAATAATTA
* *
3270 TTATTAATAATCA
1 GTATTAATAATTA
*
3283 GTATTAATTATTA
1 GTATTAATAATTA
3296 AATAAATAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (13 bp):
GTATTAATAATTA
Found at i:3548 original size:25 final size:26
Alignment explanation
Indices: 3513--3585 Score: 94
Period size: 25 Copynumber: 2.8 Consensus size: 26
3503 TTAAAAAAAA
*
3513 AAAAAGGGAAAAGAGAGGTTTAAACG
1 AAAAAGGGAAAAGAGAAGTTTAAACG
**
3539 AAAAA-GGAAAAGAGAAGTTTAAAAAA
1 AAAAAGGGAAAAGAGAAGTTT-AAACG
*
3565 AAAAAGGGAAAAGGGAAGTTT
1 AAAAAGGGAAAAGAGAAGTTT
3586 TTTCTTACCT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 14 0.34
26 13 0.32
27 14 0.34
ACGTcount: A:0.59, C:0.01, G:0.27, T:0.12
Consensus pattern (26 bp):
AAAAAGGGAAAAGAGAAGTTTAAACG
Found at i:3569 original size:27 final size:27
Alignment explanation
Indices: 3506--3585 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
3496 GATAATTTTA
*
3506 AAAAAAAAAAAAGGGAAAAGAGAGGTTT
1 AAAAAAAAAAAA-GGAAAAGAGAAGTTT
**
3534 --AAACGAAAAAGGAAAAGAGAAGTTT
1 AAAAAAAAAAAAGGAAAAGAGAAGTTT
* *
3559 AAAAAAAAAAAGGGAAAAGGGAAGTTT
1 AAAAAAAAAAAAGGAAAAGAGAAGTTT
3586 TTTCTTACCT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
25 14 0.33
26 8 0.19
27 21 0.49
ACGTcount: A:0.62, C:0.01, G:0.25, T:0.11
Consensus pattern (27 bp):
AAAAAAAAAAAAGGAAAAGAGAAGTTT
Found at i:4435 original size:59 final size:59
Alignment explanation
Indices: 4339--4722 Score: 435
Period size: 59 Copynumber: 6.6 Consensus size: 59
4329 CCCCGGAGGT
4339 CCCT-AAACTTCCAAAAATTCCATTTTTA-CCCTCGAACTTCCAAAAATCCCATTTTTGA
1 CCCTAAAACTTCCAAAAATTCCATTTTTACCCCT-GAACTTCCAAAAATCCCATTTTTGA
* * *
4397 CCCTAAAACTTCCAAACATTCCAATTTTACCCCTGAACTTACAAAAATCCCATTTTTGA
1 CCCTAAAACTTCCAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTGA
** * * *
4456 CCCCGAAACTTCCAAAAATTTCATTTTTACCCC-GAACTTCCAAAAATTCCAATTTT-A
1 CCCTAAAACTTCCAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTGA
** * * *
4513 CCCTCGAACTTCCAAAAA-TCCTTTTTTTGACCCC-GAAACTTCCAAAAATACCATTTTTAA
1 CCCTAAAACTTCCAAAAATTCC-ATTTTT-ACCCCTG-AACTTCCAAAAATCCCATTTTTGA
** * * * *
4573 CCC-CGAACTTCCAAAAATTCAAATTTTACCCCTGTACTTCCAAAAATTCCATTTTTGA
1 CCCTAAAACTTCCAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTGA
* * *
4631 TCCC-GAAACTTCAAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTAA
1 -CCCTAAAACTTCCAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTGA
* *
4690 CCCCAAAACTTCCAAAAATTATCA-TTTTACCCC
1 CCCTAAAACTTCCAAAAATT-CCATTTTTACCCC
4723 CCGAATGTCC
Statistics
Matches: 280, Mismatches: 35, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
56 2 0.01
57 21 0.08
58 59 0.21
59 186 0.66
60 12 0.04
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (59 bp):
CCCTAAAACTTCCAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTGA
Found at i:4619 original size:88 final size:87
Alignment explanation
Indices: 4339--4709 Score: 480
Period size: 88 Copynumber: 4.2 Consensus size: 87
4329 CCCCGGAGGT
* * *
4339 CCCTAAACTTCCAAAAATTCCATTTTT-ACCCTCG-AACTTCCAAAAATCCCATTTTTGACCCTA
1 CCCTGAACTTCCAAAAATTCCATTTTTGACCC-CGAAACTTCCAAAAATTCCATTTTT-ACCC-C
* *
4402 AAACTTCCAAACATTCCAATTTTAC
63 GAACTTCCAAAAATTCCAATTTTAC
* * *
4427 CCCTGAACTTACAAAAATCCCATTTTTGACCCCGAAACTTCCAAAAATTTCATTTTTACCCCGAA
1 CCCTGAACTTCCAAAAATTCCATTTTTGACCCCGAAACTTCCAAAAATTCCATTTTTACCCCGAA
4492 CTTCCAAAAATTCCAATTTTA-
66 CTTCCAAAAATTCCAATTTTAC
* *
4513 CCCTCGAACTTCCAAAAA-TCCTTTTTTTGACCCCGAAACTTCCAAAAATACCATTTTTAACCCC
1 CCCT-GAACTTCCAAAAATTCC-ATTTTTGACCCCGAAACTTCCAAAAATTCCATTTTT-ACCCC
*
4577 GAACTTCCAAAAATTCAAATTTTAC
63 GAACTTCCAAAAATTCCAATTTTAC
* * *
4602 CCCTGTACTTCCAAAAATTCCATTTTTGATCCCGAAACTTCAAAAAATTCCATTTTTACCCCTGA
1 CCCTGAACTTCCAAAAATTCCATTTTTGACCCCGAAACTTCCAAAAATTCCATTTTTACCCC-GA
* *
4667 ACTTCCAAAAATCCCATTTTTAAC
65 ACTTCCAAAAATTCCAATTTT-AC
**
4691 CCCAAAACTTCCAAAAATT
1 CCCTGAACTTCCAAAAATT
4710 ATCATTTTAC
Statistics
Matches: 249, Mismatches: 25, Indels: 17
0.86 0.09 0.06
Matches are distributed among these distances:
86 6 0.02
87 72 0.29
88 122 0.49
89 49 0.20
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (87 bp):
CCCTGAACTTCCAAAAATTCCATTTTTGACCCCGAAACTTCCAAAAATTCCATTTTTACCCCGAA
CTTCCAAAAATTCCAATTTTAC
Found at i:4722 original size:29 final size:28
Alignment explanation
Indices: 4344--4722 Score: 411
Period size: 29 Copynumber: 13.0 Consensus size: 28
4334 GAGGTCCCTA
4344 AACTTCCAAAAATTCCATTTTTACCCTCG
1 AACTTCCAAAAATTCCATTTTTACCC-CG
* **
4373 AACTTCCAAAAATCCCATTTTTGACCCTAA
1 AACTTCCAAAAATTCCATTTTT-ACCC-CG
* *
4403 AACTTCCAAACATTCCAATTTTACCCCTG
1 AACTTCCAAAAATTCCATTTTTACCCC-G
* *
4432 AACTTACAAAAATCCCATTTTTGACCCCG
1 AACTTCCAAAAATTCCATTTTT-ACCCCG
*
4461 AAACTTCCAAAAATTTCATTTTTACCCCG
1 -AACTTCCAAAAATTCCATTTTTACCCCG
*
4490 AACTTCCAAAAATTCCAATTTTACCCTCG
1 AACTTCCAAAAATTCCATTTTTACCC-CG
*
4519 AACTTCCAAAAA-TCCTTTTTTTGACCCCG
1 AACTTCCAAAAATTCC-ATTTTT-ACCCCG
*
4548 AAACTTCCAAAAATACCATTTTTAACCCCG
1 -AACTTCCAAAAATTCCATTTTT-ACCCCG
* *
4578 AACTTCCAAAAATTCAAATTTTACCCCTG
1 AACTTCCAAAAATTCCATTTTTACCCC-G
* *
4607 TACTTCCAAAAATTCCATTTTTGATCCCG
1 AACTTCCAAAAATTCCATTTTT-ACCCCG
*
4636 AAACTTCAAAAAATTCCATTTTTACCCCTG
1 -AACTTCCAAAAATTCCATTTTTACCCC-G
* *
4666 AACTTCCAAAAATCCCATTTTTAACCCCAA
1 AACTTCCAAAAATTCCATTTTT-ACCCC-G
*
4696 AACTTCCAAAAATTATCA-TTTTACCCC
1 AACTTCCAAAAATT-CCATTTTTACCCC
4723 CCGAATGTCC
Statistics
Matches: 297, Mismatches: 38, Indels: 30
0.81 0.10 0.08
Matches are distributed among these distances:
28 32 0.11
29 139 0.47
30 122 0.41
31 4 0.01
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.32
Consensus pattern (28 bp):
AACTTCCAAAAATTCCATTTTTACCCCG
Found at i:5209 original size:96 final size:96
Alignment explanation
Indices: 5077--5268 Score: 226
Period size: 96 Copynumber: 2.0 Consensus size: 96
5067 GCTTTAAAAA
** * *** **
5077 AATCGAGGCAATATTTTTTTATTTCGAGTTTCGAAAATTTGTTCCTTAACTCACTAGGCGTAATT
1 AATCGAGGCAATATTTCCTTATTTCGAGTTTCGAAAAATTACGCCTTAACTCACTAGGCGTAACC
*
5142 TTTCTTCAAATCGAAATAATCGAATACCCTT
66 TTTCTTCAAATCGAAATAAGCGAATACCCTT
* * *
5173 AATCGAGGCAATGTTTCCTTATCTTCGA--TTCTGAAAAATTACGCCTTAACTTACTAGGTGTAA
1 AATCGAGGCAATATTTCCTTAT-TTCGAGTTTC-GAAAAATTACGCCTTAACTCACTAGGCGTAA
* *
5236 CCTTTCTTCAAATCGAGATAAGCGAATATCCTT
64 CCTTTCTTCAAATCGAAATAAGCGAATACCCTT
5269 TCTGCAAAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
95 3 0.04
96 72 0.90
97 5 0.06
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (96 bp):
AATCGAGGCAATATTTCCTTATTTCGAGTTTCGAAAAATTACGCCTTAACTCACTAGGCGTAACC
TTTCTTCAAATCGAAATAAGCGAATACCCTT
Found at i:10423 original size:25 final size:26
Alignment explanation
Indices: 10360--10424 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 26
10350 ATAATTTTTT
**
10360 TTTTTTAAAAAAAGGGGAAAAGAGAG
1 TTTTTTAAAAAAAGGAAAAAAGAGAG
* *
10386 -GTTTAAATGAAAAAGGAAAAAAGA-AG
1 TTTTTTAA--AAAAAGGAAAAAAGAGAG
10412 TTTTTTAAAAAAA
1 TTTTTTAAAAAAA
10425 AAGGGAAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
25 10 0.33
26 2 0.07
27 18 0.60
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (26 bp):
TTTTTTAAAAAAAGGAAAAAAGAGAG
Found at i:11244 original size:30 final size:29
Alignment explanation
Indices: 11178--11546 Score: 370
Period size: 30 Copynumber: 12.5 Consensus size: 29
11168 GGAGGTCCCT
11178 AAACTTCCAAAAATTCCATTTTTACCCTC-
1 AAACTTCCAAAAATTCCATTTTTACCC-CA
* *
11207 GAACTTCCAAAAATCCCATTTTTGACCCCA
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
*
11237 AAACTTCCAAAAATTCTATTTTTACCTCC-
1 AAACTTCCAAAAATTCCATTTTTACC-CCA
* * * ***
11266 GAACTTCCAAAAATCCCATTTTTGATCTTG
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
11296 AAACTTCCAAAAATTCCATTTTTACCCTC-
1 AAACTTCCAAAAATTCCATTTTTACCC-CA
* * *
11325 GAACTTCCAAAAATCCCATTTTTGACCCAA
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
*
11355 AAACTTCCAAAAATTCCAATTTTACCCCCA
1 AAACTTCCAAAAATTCCATTTTTA-CCCCA
* * *
11385 AAACTTCCAAAAATCCCTTTTTTGACACCA
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
* *
11415 AAACTTCCAAAAATAT-CA-TTTTAACCCT
1 AAACTTCCAAAAAT-TCCATTTTTACCCCA
*
11443 AAACTTCCAAAAATTCCATTTTTACCCCCT
1 AAACTTCCAAAAATTCCATTTTTA-CCCCA
* *
11473 AAACTTCCAAAAATTCAATTTTTACCCCC
1 AAACTTCCAAAAATTCCATTTTTACCCCA
* * * **
11502 GAACTTCCAAAAATCCCATTTTTGAACCTG
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
11532 AAACTTCCAAAAATT
1 AAACTTCCAAAAATT
11547 ATCATTTACC
Statistics
Matches: 282, Mismatches: 43, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.00
28 19 0.07
29 102 0.36
30 159 0.56
31 1 0.00
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.31
Consensus pattern (29 bp):
AAACTTCCAAAAATTCCATTTTTACCCCA
Found at i:11270 original size:59 final size:58
Alignment explanation
Indices: 11178--11546 Score: 481
Period size: 59 Copynumber: 6.3 Consensus size: 58
11168 GGAGGTCCCT
11178 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCA
1 AAACTTCCAAAAATTCCATTTTTACCC-CGAACTTCCAAAAATCCCATTTTTGACCCCA
* * ***
11237 AAACTTCCAAAAATTCTATTTTTACCTCCGAACTTCCAAAAATCCCATTTTTGATCTTG
1 AAACTTCCAAAAATTCCATTTTTACC-CCGAACTTCCAAAAATCCCATTTTTGACCCCA
*
11296 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCAA
1 AAACTTCCAAAAATTCCATTTTTACCC-CGAACTTCCAAAAATCCCATTTTTGACCCCA
* * * *
11355 AAACTTCCAAAAATTCCAATTTTACCCCCAAAACTTCCAAAAATCCCTTTTTTGACACCA
1 AAACTTCCAAAAATTCCATTTTTA-CCCC-GAACTTCCAAAAATCCCATTTTTGACCCCA
* ** * *
11415 AAACTTCCAAAAATAT-CATTTTAACCCTAAACTTCCAAAAATTCCATTTTT-ACCCCCT
1 AAACTTCCAAAAAT-TCCATTTTTACCCCGAACTTCCAAAAATCCCATTTTTGA-CCCCA
* * **
11473 AAACTTCCAAAAATTCAATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGAACCTG
1 AAACTTCCAAAAATTCCATTTTTA-CCCCGAACTTCCAAAAATCCCATTTTTGACCCCA
11532 AAACTTCCAAAAATT
1 AAACTTCCAAAAATT
11547 ATCATTTACC
Statistics
Matches: 271, Mismatches: 30, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
57 2 0.01
58 45 0.17
59 172 0.63
60 51 0.19
61 1 0.00
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.31
Consensus pattern (58 bp):
AAACTTCCAAAAATTCCATTTTTACCCCGAACTTCCAAAAATCCCATTTTTGACCCCA
Found at i:11553 original size:118 final size:118
Alignment explanation
Indices: 11178--11546 Score: 550
Period size: 118 Copynumber: 3.1 Consensus size: 118
11168 GGAGGTCCCT
11178 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAACTT
1 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAACTT
* * * *
11243 CCAAAAATTCTATTTTTACCTCCGAACTTCCAAAAATCCCATTTTTGATCTTG
66 CCAAAAATTCAATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGAACCTG
*
11296 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCAAAAACTT
1 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAACTT
* * *
11361 CCAAAAATTCCAA-TTTTACCCCCAAAACTTCCAAAAATCCCTTTTTTGACACC-A
66 CCAAAAATT-CAATTTTTACCCCC-GAACTTCCAAAAATCCCATTTTTGA-ACCTG
* * * *
11415 AAACTTCCAAAAATAT-CATTTTAACCCT-AAACTTCCAAAAATTCCATTTTT-ACCCCCTAAAC
1 AAACTTCCAAAAAT-TCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGA-CCCCAAAAC
11477 TTCCAAAAATTCAATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGAACCTG
64 TTCCAAAAATTCAATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGAACCTG
11532 AAACTTCCAAAAATT
1 AAACTTCCAAAAATT
11547 ATCATTTACC
Statistics
Matches: 228, Mismatches: 16, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
116 4 0.02
117 41 0.18
118 131 0.57
119 50 0.22
120 2 0.01
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.31
Consensus pattern (118 bp):
AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCAAAACTT
CCAAAAATTCAATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGAACCTG
Found at i:19948 original size:153 final size:152
Alignment explanation
Indices: 19471--20597 Score: 1431
Period size: 152 Copynumber: 7.5 Consensus size: 152
19461 TTCTGTCAGA
* * * *
19471 CACATGACAAACAATACCCAAACACTTTAATACAACTTAATAAAATGACAGATAATAACCAATAC
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
* * * *
19536 AAAAATAATTTAATACAAAAAAGAATTACATTTCTGTCATGTACAATAA-C---C----A--A-G
66 AAAAACAATTTAACAC-AAAAA-AA-TCCATTTTTGTCATGTACAATAACCAAACAATAATCATG
19590 CACTTTAATCCAAAACAATATCATG
128 CACTTTAATCCAAAACAATATCATG
*
19615 CACAT-AGCAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAAACAATAACCAATA
1 CACATGA-CAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATA
* * * * *
19679 CAAAAAAAAATTAACACAAAAAAATTCATTTCTGTTATGTACAATAACCAAACAATAATCATGCA
65 CAAAAACAATTTAACACAAAAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCATGCA
19744 CTTTAATCCAAAACAATATCATG
130 CTTTAATCCAAAACAATATCATG
* * * * ** *
19767 CACGTGGCATACAATAACCAAACACTTTAAGACAACTTAATAAAATGATAGACAATAACCAATTC
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
* * * *
19832 AAAAACAATTTAACACAATAAAACTCCATTCTTATCATGTACAATAACCAAATAATAATCATGCA
66 AAAAACAATTTAACACAA-AAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCATGCA
* * * *
19897 CTTTAATCCAAAATAGTATAATA
130 CTTTAATCCAAAACAATATCATG
* * * * * *
19920 TACATGATAGATAATAACCAAACACTTTAATATAACTTAATAAAATGGGAGACAATAACCAGTAC
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
* * * *
19985 AAAAACAATTTAACACAAAAATAATTCATTTCTGTCACGTACAATAACCAAACATTAATCATGCA
66 AAAAACAATTTAACACAAAAA-AATCCATTTTTGTCATGTACAATAACCAAACAATAATCATGCA
* *
20050 CTTTAATCAAAAACAGTATCATG
130 CTTTAATCCAAAACAATATCATG
* ** * *
20073 CACACGGGAGACAATAACCAAGCACTTTAATACAATTTAATAAAATGGCAGACAATAACCAATAC
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
** * *
20138 AAAAACAATTTAACACAAAAATGTCCATTTTTGTCATGTACAATAACCAAACACTAATCATGCAA
66 AAAAACAATTTAACACAAAAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCATGCAC
20203 TTTAATCCAAAACAATATCATG
131 TTTAATCCAAAACAATATCATG
* * *
20225 CACATGACAGACAATAACCAAAAACTTTAATACAACTTAATAAAATGGCAAACTATAACCAATAC
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
* * * * * *
20290 AAAAGCAATTTAACACAAAAATATACATTTTTGTCACGTAAAATAATCAAACAATAATCATGCAC
66 AAAAACAATTTAACACAAAAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCATGCAC
*
20355 TTAAATCCAAAACAATATCATG
131 TTTAATCCAAAACAATATCATG
* * *
20377 CACATAACAGTCAATAACCAAACACTTTAATGCAACTTAATAAAATGAG-AGACAATAACCAATA
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATG-GCAGACAATAACCAATA
20441 CAAAAACAATTTAACAAACAAAAAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCAT
65 CAAAAACAATTTAAC--AC-AAAAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCAT
* * *
20506 GCACTTGAATCCAAAATAGTATCATG
127 GCACTTTAATCCAAAACAATATCATG
* * *
20532 CACATGACAGAC---AACCAAACACTTTACTACAACTTAATAAAATGGCAGTCAATAACCAACAC
1 CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
20594 AAAA
66 AAAA
20598 GAATCCATTT
Statistics
Matches: 851, Mismatches: 112, Indels: 32
0.86 0.11 0.03
Matches are distributed among these distances:
141 21 0.02
142 3 0.00
143 6 0.01
144 71 0.08
145 1 0.00
149 1 0.00
151 2 0.00
152 411 0.48
153 260 0.31
154 2 0.00
155 73 0.09
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.24
Consensus pattern (152 bp):
CACATGACAGACAATAACCAAACACTTTAATACAACTTAATAAAATGGCAGACAATAACCAATAC
AAAAACAATTTAACACAAAAAAATCCATTTTTGTCATGTACAATAACCAAACAATAATCATGCAC
TTTAATCCAAAACAATATCATG
Done.