Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012193.1 Kokia drynarioides strain JFW-HI SEQ_127194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7429
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:2352 original size:16 final size:16

Alignment explanation


    Indices: 2331--2363  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2321 TCACTTTGGT

                            
       2331 TTTGAATCATTTCAAG
          1 TTTGAATCATTTCAAG

                    *       
       2347 TTTGAATCGTTTCAAG
          1 TTTGAATCATTTCAAG

             
       2363 T
          1 T

       2364 CTAGATCATG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45


Consensus pattern (16 bp):   
TTTGAATCATTTCAAG
Done.