genome.fa.s12199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012199.1 Kokia drynarioides strain JFW-HI SEQ_127200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199976

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2214--2257	21	2.1	21	82	0	52	22	15	18	43	1.88
2944--3008	24	2.7	24	76	9	60	52	0	6	41	1.26
3525--3572	23	2.3	23	86	13	68	33	2	0	64	1.05
6155--6198	21	2.1	21	82	0	52	22	15	18	43	1.88
6885--6949	24	2.7	24	76	9	60	52	0	6	41	1.26
7466--7513	23	2.3	23	86	13	68	33	2	0	64	1.05
7407--7708	138	2.3	128	85	11	411	34	4	4	55	1.41
7455--7771	138	2.4	133	90	4	519	35	3	5	55	1.39
8447--8486	18	2.2	18	86	0	53	17	2	42	37	1.63
8637--8671	18	1.9	18	100	0	70	40	5	31	22	1.78
9871--9914	22	2.0	22	100	0	88	13	31	18	36	1.90
11180--11427	52	4.8	52	88	1	336	29	13	24	32	1.93
12349--12377	14	2.0	15	93	6	51	48	6	24	20	1.74
13495--13692	52	3.8	52	86	0	279	30	15	23	31	1.95
14085--14115	2	15.5	2	100	0	62	51	0	0	48	1.00
14908--15235	51	6.4	51	82	2	345	31	13	23	31	1.93
14908--15233	102	3.2	103	84	2	397	31	13	23	31	1.93
22183--22468	51	5.6	51	87	0	392	31	12	24	30	1.93
22175--22468	153	1.9	153	89	0	453	31	12	24	30	1.92
24508--24536	14	2.0	15	93	6	51	48	6	24	20	1.74
27044--27241	52	3.8	52	85	1	254	29	15	22	32	1.94
27044--27279	104	2.3	104	82	7	282	27	15	23	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34198--34234	18	2.0	20	84	10	51	35	5	8	51	1.55
39629--39688	21	2.7	22	76	18	61	40	28	6	25	1.80
41907--42056	62	2.4	61	84	4	183	21	0	29	49	1.50
42032--42080	24	2.1	24	81	7	57	30	2	20	46	1.62
52938--52975	2	19.0	2	88	0	58	55	0	44	0	0.99
61086--61137	27	1.9	27	92	0	86	32	19	15	32	1.93
64172--64216	20	2.2	20	84	7	56	51	2	15	31	1.56
72261--72624	195	1.9	196	85	6	506	28	24	16	30	1.96
72795--72939	73	2.0	73	94	0	254	26	19	16	37	1.93
79548--79575	1	28.0	1	100	0	56	100	0	0	0	0.00
79791--79926	9	14.2	9	69	11	74	57	0	1	40	1.13
79790--79923	29	4.6	28	85	6	153	58	0	1	39	1.13
82202--82246	17	2.6	17	96	0	81	20	40	4	35	1.72
83435--83612	66	2.7	66	95	0	311	31	14	17	37	1.89
90797--90830	17	1.9	17	88	5	50	61	2	0	35	1.11
90812--90854	22	2.0	22	86	9	61	65	2	0	32	1.06
92203--92290	22	4.0	22	82	5	88	6	4	20	68	1.31
92281--92314	12	2.8	12	90	0	50	8	0	14	76	1.01
92253--92327	24	3.2	23	81	7	80	9	2	14	73	1.19
92286--92349	24	2.6	25	78	7	69	9	4	12	73	1.23
92253--92356	48	2.2	46	84	3	127	8	3	17	70	1.28
95580--95630	21	2.4	21	100	0	102	23	21	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105226--105263	19	2.0	19	89	0	58	7	2	34	55	1.43
106224--106266	22	1.9	22	85	4	59	51	11	11	25	1.72
112585--112678	36	2.6	36	78	6	86	39	3	4	53	1.37
119931--119991	29	2.1	29	87	0	86	27	24	19	27	1.99
119960--120047	38	2.3	38	88	0	131	32	18	15	32	1.92
132310--132455	50	2.9	50	81	7	188	28	15	23	32	1.95
132310--132428	25	4.8	25	72	13	102	28	15	22	32	1.95
141931--141986	21	2.7	21	78	13	62	30	10	28	30	1.91
152993--153017	13	1.9	13	100	0	50	24	16	12	48	1.79
155821--155879	26	2.3	26	81	0	64	38	0	5	55	1.22
156032--156122	14	6.3	14	71	11	58	20	0	27	51	1.48
158133--158282	23	6.4	23	76	12	80	12	23	23	41	1.87
165419--165540	23	5.4	22	79	11	97	12	22	23	40	1.88
166245--166285	18	2.3	18	87	8	57	7	29	39	24	1.82
174057--174092	3	12.0	3	100	0	72	66	0	0	33	0.92
177715--177746	14	2.3	14	100	0	64	46	6	34	12	1.67
192598--192622	3	8.3	3	100	0	50	68	0	0	32	0.90
194269--194347	28	2.9	28	78	17	78	62	8	0	29	1.26
194741--194765	9	2.8	9	100	0	50	20	0	0	80	0.72
194929--194984	29	1.9	29	92	0	94	26	16	12	44	1.83
195107--195149	18	2.4	18	80	7	52	46	2	0	51	1.13
196317--196379	15	4.2	15	85	0	72	44	15	11	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197137--197269	41	3.3	39	75	15	119	20	15	11	52	1.73
197140--197262	21	6.0	21	72	11	96	19	16	10	53	1.71
197137--197289	20	7.6	20	72	10	107	21	15	11	51	1.74

Tables:   1

The End!