Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000122.1 Kokia drynarioides strain JFW-HI SEQ_110764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29


Found at i:734 original size:17 final size:17

Alignment explanation


    Indices: 709--741  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        699 GTAATAGATA

                *            
        709 AAGTTACAAATACAGTC
          1 AAGTCACAAATACAGTC

                            
        726 AAGTCACAAATACAGT
          1 AAGTCACAAATACAGT

        742 TACAGATGCA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.48, C:0.18, G:0.12, T:0.21


Consensus pattern (17 bp):   
AAGTCACAAATACAGTC
Done.