genome.fa.s1220.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001220.1 Kokia drynarioides strain JFW-HI SEQ_112574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87690

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1679--1777	39	2.5	39	93	3	164	26	6	15	52	1.65
1830--1917	32	2.8	32	91	0	131	29	10	20	39	1.85
5500--5625	32	4.0	32	91	2	200	30	10	19	39	1.85
5501--5625	63	2.0	63	95	0	223	29	10	20	40	1.85
7256--7290	18	1.9	18	88	0	52	37	0	22	40	1.55
7430--7468	18	2.2	18	90	9	62	64	2	7	25	1.33
15965--16115	71	2.1	71	95	2	268	35	20	20	23	1.96
17974--18034	29	2.1	29	100	0	122	55	6	22	14	1.62
22570--22622	20	2.5	22	78	12	65	41	7	0	50	1.30
24428--24566	71	2.0	71	88	2	208	39	19	18	22	1.92
26292--26334	23	2.0	22	86	9	61	48	13	0	37	1.43
26676--26759	42	2.0	42	97	0	159	34	16	20	28	1.94
29895--30125	116	2.0	116	98	0	444	48	13	6	31	1.67
40435--40495	30	2.1	30	81	9	72	32	8	4	54	1.52
41202--41246	6	7.5	6	97	0	72	17	53	0	28	1.44
45954--45980	2	13.5	2	100	0	54	51	0	0	48	1.00
46480--46533	15	3.4	17	74	20	55	70	0	0	29	0.88
46510--46534	5	5.0	5	100	0	50	80	0	0	20	0.72
53771--53808	18	2.2	18	85	4	51	50	2	0	47	1.15
53811--53869	19	3.1	19	82	7	75	37	1	6	54	1.37
53811--53867	20	3.0	20	85	12	75	36	1	5	56	1.32
57182--57322	55	2.7	53	75	16	127	50	0	4	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58501--58617	62	1.9	60	86	5	164	50	2	3	43	1.32
58593--58644	20	2.8	18	78	21	63	51	3	1	42	1.31
66576--66605	15	2.0	15	100	0	60	33	13	13	40	1.83
68561--68725	37	4.6	37	74	10	155	39	29	15	15	1.88
68607--68740	67	2.0	68	89	1	207	41	30	14	12	1.84
68607--68758	37	4.3	37	73	12	124	41	29	15	13	1.85
69889--69951	31	2.0	31	100	0	126	49	9	3	38	1.51
70468--70497	5	6.0	5	100	0	60	60	20	0	20	1.37
82503--82544	20	2.2	19	83	12	50	38	16	2	42	1.61

Tables:   1

The End!