Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012206.1 Kokia drynarioides strain JFW-HI SEQ_127207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7206
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28


Found at i:1456 original size:6 final size:6

Alignment explanation


    Indices: 1445--1477  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       1435 AAGCATGTTA

                                                    
       1445 TTTTCT TTTTCT TTTTCT TTTT-T TTTT-T TTTTC
          1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTC

       1478 ATGGACATAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   5   10  0.38
   6   16  0.62

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (6 bp):   
TTTTCT

Found at i:2454 original size:23 final size:23

Alignment explanation


    Indices: 2424--2477  Score: 108
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       2414 GCTTTAACAG

                                   
       2424 TTACATCGGTAATCATTGAAAAT
          1 TTACATCGGTAATCATTGAAAAT

                                   
       2447 TTACATCGGTAATCATTGAAAAT
          1 TTACATCGGTAATCATTGAAAAT

                    
       2470 TTACATCG
          1 TTACATCG

       2478 CTATAATACT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   31  1.00

ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Consensus pattern (23 bp):   
TTACATCGGTAATCATTGAAAAT
Done.