genome.fa.s12213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012213.1 Kokia drynarioides strain JFW-HI SEQ_127214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158941

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4594--4696	49	2.1	49	94	0	179	48	10	14	26	1.76
4618--4690	17	4.4	17	68	13	53	49	8	16	26	1.73
5940--5985	5	9.2	5	81	13	51	19	2	0	78	0.86
5940--5985	11	4.0	11	88	5	65	19	2	0	78	0.86
6971--7157	96	1.9	96	82	8	229	35	14	19	30	1.92
7415--7760	30	11.8	28	73	12	196	32	4	28	34	1.77
7384--7755	29	12.6	30	73	12	227	32	3	28	35	1.75
7382--7761	58	6.4	58	77	11	292	31	3	28	35	1.76
9312--9363	12	4.6	12	81	9	56	53	3	0	42	1.19
9321--9353	6	5.7	6	85	7	50	57	0	0	42	0.98
9321--9362	10	3.8	11	84	9	50	57	2	0	40	1.12
10314--10360	2	23.5	2	95	0	85	46	0	2	51	1.13
12655--12975	30	10.7	30	78	8	262	39	21	4	34	1.74
12677--12975	89	3.3	92	81	4	288	39	21	4	34	1.74
12983--13065	14	5.9	13	72	19	60	26	0	3	69	1.04
12983--13046	21	3.1	21	86	6	78	26	0	3	70	1.02
12977--13060	5	17.0	5	76	8	59	27	0	3	69	1.05
12977--13065	31	3.1	29	78	13	87	26	0	3	69	1.04
12983--13064	16	5.7	15	78	17	68	26	0	3	69	1.05
15030--15101	31	2.3	31	83	4	92	29	19	8	43	1.80
19735--19866	50	2.6	50	83	2	140	36	19	21	21	1.95
19774--19872	50	2.0	50	89	0	153	32	21	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19920--20090	39	4.3	40	74	8	161	31	25	16	26	1.97
19909--20090	79	2.3	79	86	0	256	32	24	17	25	1.96
20678--20738	5	11.2	5	74	22	52	21	3	1	73	1.06
20678--20738	11	5.5	11	79	11	63	21	3	1	73	1.06
20678--20724	17	2.8	16	78	15	51	19	2	2	76	0.99
20679--20738	22	2.8	21	85	12	77	21	3	1	73	1.07
20675--20735	28	2.2	27	85	11	79	21	4	1	72	1.13
20849--20882	17	2.1	17	94	5	61	50	23	5	20	1.70
22028--22287	30	8.7	29	77	7	191	40	23	3	32	1.71
22028--22285	60	4.3	58	76	8	214	41	23	3	32	1.71
22062--22286	90	2.5	88	80	9	222	40	22	3	33	1.71
22332--22395	5	13.2	5	77	6	53	20	1	3	75	1.03
22345--22414	28	2.4	27	84	13	86	21	1	5	71	1.15
24820--24853	17	2.0	17	88	11	52	61	0	0	38	0.96
48628--48661	16	2.1	17	88	5	52	35	8	0	55	1.31
48615--48662	21	2.2	22	81	3	62	37	6	0	56	1.25
53876--53911	3	12.0	3	100	0	72	66	0	0	33	0.92
54957--54987	2	15.5	2	100	0	62	51	0	0	48	1.00
57191--57238	25	2.0	24	83	4	60	62	4	2	31	1.26
57223--57298	39	2.1	38	81	13	90	61	0	1	36	1.04
78838--78906	29	2.3	29	82	9	77	44	1	1	52	1.19
78851--78892	22	2.0	22	90	9	70	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79107--79174	29	2.3	30	80	9	77	33	8	1	55	1.40
97132--97178	19	2.5	19	96	0	85	21	27	21	29	1.98
97172--97206	18	1.9	18	88	0	52	40	20	17	22	1.92
98888--98975	45	2.0	45	88	0	131	50	4	5	39	1.47
99073--99112	20	2.1	19	86	13	55	57	2	2	37	1.26
105904--106193	29	9.9	29	78	8	293	31	4	30	34	1.77
105891--106189	58	5.1	58	85	2	375	31	4	29	34	1.78
105891--106189	59	5.1	59	84	5	372	31	4	29	34	1.78
106817--106884	33	2.1	33	100	0	136	17	39	30	11	1.86
107310--107338	3	9.7	3	100	0	58	34	0	0	65	0.93
107984--108052	6	12.0	6	79	14	74	50	1	1	46	1.19
107994--108059	11	5.9	11	78	16	73	56	1	0	42	1.08
108004--108059	17	3.4	17	87	2	87	55	1	0	42	1.10
108006--108062	16	3.5	16	80	4	69	57	1	0	40	1.09
108402--109499	207	5.3	207	94	0	1881	20	22	21	35	1.96
109987--110039	27	2.0	27	85	3	72	62	5	15	16	1.51
121129--121453	29	11.1	29	75	10	236	33	2	28	34	1.72
121197--121442	87	2.8	86	85	7	318	34	1	28	34	1.67
123212--123274	11	5.7	11	76	12	58	58	1	0	39	1.07
123202--123271	17	4.1	17	83	5	88	51	1	1	45	1.18
123202--123274	33	2.2	34	85	2	94	53	1	1	43	1.17
123202--123264	6	11.0	6	77	16	62	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123452--123497	16	2.8	16	80	3	56	52	0	0	47	1.00
124674--124745	30	2.4	31	93	4	121	58	2	5	33	1.36
143585--143668	42	2.0	42	95	0	150	28	26	19	26	1.98
148282--148348	31	2.2	31	88	0	98	34	2	10	52	1.51
148292--148356	31	2.1	31	94	0	112	35	1	7	55	1.38
157134--157168	6	5.8	6	100	0	70	0	48	0	51	1.00
158096--158120	5	5.0	5	100	0	50	20	0	40	40	1.52
158682--158803	23	5.3	23	77	7	92	40	25	20	13	1.88

Tables:   1

The End!