genome.fa.s12223.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012223.1 Kokia drynarioides strain JFW-HI SEQ_127224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157318

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752--779	3	9.3	3	100	0	56	32	0	32	35	1.58
3485--3532	20	2.5	20	86	3	71	68	0	0	31	0.90
3484--3530	19	2.3	21	82	10	62	72	0	0	27	0.85
3503--3544	16	2.6	16	75	14	50	66	0	0	33	0.92
3924--3957	17	2.0	17	94	0	59	44	0	2	52	1.16
4823--4886	6	11.0	6	79	12	71	46	1	1	50	1.20
4814--4885	23	3.2	22	79	11	74	44	1	1	52	1.18
4816--4886	17	4.1	17	85	8	90	46	1	1	50	1.18
4816--4867	11	4.6	11	79	13	61	46	1	0	51	1.12
5636--5675	13	3.1	13	85	7	55	55	0	0	45	0.99
6791--6982	29	6.5	29	80	7	208	38	26	3	32	1.72
6791--7018	88	2.6	88	83	4	255	36	27	3	32	1.75
6791--7106	59	5.4	59	75	8	213	36	27	4	32	1.76
18844--19503	206	3.2	205	86	2	844	36	20	21	20	1.95
19821--19901	6	14.0	6	71	12	62	44	1	2	51	1.22
19814--19901	17	5.1	17	80	1	104	44	1	2	52	1.21
19841--19885	23	2.0	23	90	0	72	48	2	0	48	1.13
20659--20694	7	5.3	7	86	6	56	58	0	0	41	0.98
21772--22004	29	7.9	29	78	6	229	34	28	3	33	1.74
21777--22011	59	4.0	57	81	6	249	33	28	4	33	1.77
21784--22119	58	5.7	59	77	10	237	33	28	4	33	1.77
21782--22032	29	8.6	27	75	8	135	33	28	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21784--22032	88	2.8	88	76	6	231	33	28	4	33	1.77
28198--28247	25	2.0	26	92	4	84	24	22	4	50	1.66
30389--30445	22	2.5	24	77	13	66	64	1	0	33	1.04
30389--30458	23	3.0	23	74	17	65	61	1	0	37	1.05
31744--31799	20	2.7	21	81	15	55	42	1	5	50	1.35
35871--35921	24	2.2	24	85	3	68	19	11	19	49	1.79
36288--36375	29	3.1	29	83	1	115	42	20	7	29	1.80
39165--39265	35	2.9	34	78	7	96	38	3	14	42	1.65
39130--39256	34	3.7	36	75	10	113	35	5	15	43	1.70
42790--43023	61	4.0	61	87	7	331	29	21	13	35	1.92
42918--43038	53	2.3	53	92	0	197	32	20	14	32	1.93
42918--43056	53	2.6	53	89	2	190	30	20	15	33	1.94
42919--43159	51	4.6	51	81	4	198	29	22	15	33	1.94
42972--43159	102	1.8	103	82	7	247	27	22	15	33	1.95
44756--44780	11	2.3	11	100	0	50	40	16	8	36	1.77
47438--47547	17	6.3	18	80	9	113	41	2	2	52	1.30
47470--47514	6	7.8	6	80	9	58	44	0	2	53	1.13
47438--47547	35	3.2	34	83	7	116	41	2	2	52	1.30
47473--47514	11	3.7	12	84	9	52	40	0	2	57	1.12
47438--47547	52	2.1	52	86	0	148	41	2	2	52	1.30
49396--49652	29	8.7	29	83	10	299	34	30	3	31	1.75
49396--49630	88	2.7	87	86	8	307	34	30	3	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49396--49746	59	6.0	59	79	12	300	34	30	3	31	1.74
49405--49685	29	9.6	28	77	13	121	33	31	3	31	1.75
52301--52330	15	2.0	15	93	0	51	50	20	6	23	1.71
58857--58883	14	1.9	14	100	0	54	44	14	25	14	1.84
61369--62181	205	4.0	205	87	2	1103	36	20	21	21	1.95
62572--62681	17	6.3	18	83	9	131	41	1	2	53	1.25
62572--62681	35	3.2	34	87	5	141	41	1	2	53	1.25
62572--62681	52	2.1	52	89	0	166	41	1	2	53	1.25
63671--63711	16	2.4	17	84	15	50	36	12	12	39	1.80
64542--64819	59	4.7	59	84	4	323	30	29	4	34	1.78
64542--64820	29	9.5	29	77	14	261	31	29	4	34	1.78
71166--71260	49	2.0	48	89	2	145	27	28	13	30	1.94
72786--72843	18	3.2	18	75	18	66	32	0	15	51	1.44
77243--77441	105	1.9	104	80	8	231	25	24	11	38	1.89
80008--80033	3	8.7	3	100	0	52	65	0	0	34	0.93
80315--80373	29	2.0	29	96	0	109	23	15	23	37	1.93
85416--85499	17	5.0	17	81	4	91	38	3	3	54	1.35
87339--87475	30	4.7	29	74	13	120	32	26	2	38	1.71
87335--87621	117	2.4	116	83	5	355	32	25	3	39	1.72
87335--87801	59	7.8	59	78	9	312	33	25	3	38	1.73
87639--87751	29	3.8	30	74	11	108	37	25	2	34	1.70
87670--87800	29	4.5	30	73	12	103	34	28	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87670--87777	30	3.6	28	71	19	85	35	29	0	34	1.64
87757--87818	28	2.2	28	82	0	70	30	27	9	32	1.89
90378--90497	23	5.1	23	74	15	102	13	26	19	40	1.88
90378--90497	48	2.6	46	81	7	152	13	26	19	40	1.88
103766--103798	17	1.9	17	93	0	57	57	0	15	27	1.38
106296--106364	33	2.1	33	100	0	138	23	20	20	36	1.95
115197--115240	23	1.9	23	95	0	79	47	20	15	15	1.82
118080--118106	2	13.5	2	100	0	54	51	0	48	0	1.00
120330--120456	62	2.0	62	93	0	218	31	24	13	30	1.93
127953--128031	38	2.2	37	82	8	92	51	10	10	27	1.67
127971--128049	38	2.1	38	87	0	113	55	8	8	26	1.60
129548--129597	17	2.9	17	85	11	59	34	0	6	60	1.21
129642--129682	21	2.0	20	86	13	57	48	2	4	43	1.37
134793--134864	35	2.1	35	100	0	144	26	26	16	30	1.97
138284--138357	4	18.2	4	83	8	69	66	0	32	1	1.00
141832--141883	14	3.7	14	75	10	52	23	5	25	46	1.74
141832--141897	28	2.4	27	78	9	71	24	4	24	46	1.71
142124--142181	29	2.0	30	82	3	73	50	0	0	50	1.00
143384--143494	30	3.8	30	70	22	83	50	3	0	45	1.25
143384--143467	30	2.7	31	79	15	86	48	3	1	46	1.27
143708--143788	29	2.8	29	88	0	117	25	9	11	53	1.67
146521--146552	17	1.9	16	93	6	55	84	0	3	12	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147329--147366	14	2.7	14	88	8	51	65	7	2	23	1.32
151302--151397	48	2.0	48	100	0	192	41	8	27	22	1.82

Tables:   1

The End!