Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012225.1 Kokia drynarioides strain JFW-HI SEQ_127226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14520
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:8258 original size:29 final size:29

Alignment explanation


    Indices: 8224--8297  Score: 139
    Period size: 29  Copynumber: 2.6  Consensus size: 29

       8214 GTTCAAATTT

                                         
       8224 AAAAGTTTGGAAGCGTTTTGGTCAAAAAA
          1 AAAAGTTTGGAAGCGTTTTGGTCAAAAAA

                                         
       8253 AAAAGTTTGGAAGCGTTTTGGTCAAAAAA
          1 AAAAGTTTGGAAGCGTTTTGGTCAAAAAA

                     *      
       8282 AAAAGTTTGAAAGCGT
          1 AAAAGTTTGGAAGCGT

       8298 AGACGGTGTA


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  29   44  1.00

ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27


Consensus pattern (29 bp):   
AAAAGTTTGGAAGCGTTTTGGTCAAAAAA
Done.