Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012229.1 Kokia drynarioides strain JFW-HI SEQ_127230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37


Found at i:24 original size:17 final size:17

Alignment explanation


    Indices: 2--34  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

          1 T

                    *        
          2 AAATGCAATGACAATGA
          1 AAATGCAACGACAATGA

                            
         19 AAATGCAACGACAATG
          1 AAATGCAACGACAATG

         35 CTTACTAACA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.52, C:0.15, G:0.18, T:0.15


Consensus pattern (17 bp):   
AAATGCAACGACAATGA
Done.