Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012230.1 Kokia drynarioides strain JFW-HI SEQ_127231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3403
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.32

Warning! 376 characters in sequence are not A, C, G, or T


Found at i:352 original size:87 final size:87

Alignment explanation


    Indices: 205--426  Score: 347
    Period size: 87  Copynumber: 2.6  Consensus size: 87

        195 GGAGCTTCTA

                         *      *                                        *   
        205 CTTCCGATTCTGGGGATGCTACCTCCCCTGAACTCAAAAGTACCCTTTCAGTTTCCGGAGGTGGC
          1 CTTCCGATTCTGGAGATGCTGCCTCCCCTGAACTCAAAAGTACCCTTTCAGTTTCCGGAGGCGGC

                                  
        270 ATGCTATCAAAAGGATTCTCCC
         66 ATGCTATCAAAAGGATTCTCCC

                                                                    *        
        292 CTTCCGATTCTGGAGATGCTGCCTCCCCTGAACTCAAAAGTACCCTTTC-GATTTCTGGAGGCGG
          1 CTTCCGATTCTGGAGATGCTGCCTCCCCTGAACTCAAAAGTACCCTTTCAG-TTTCCGGAGGCGG

                        *         *
        356 CATGCTATCAAACGGATTCTCCT
         65 CATGCTATCAAAAGGATTCTCCC

                      *           *             *           
        379 CTTCCGATTCAGGAGATGCTGCTTCCCCTGAACTCATAAGTACCCTTT
          1 CTTCCGATTCTGGAGATGCTGCCTCCCCTGAACTCAAAAGTACCCTTT

        427 TGGCTTCCGG


Statistics
Matches: 125,  Mismatches: 9, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
  86    1  0.01
  87  124  0.99

ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29


Consensus pattern (87 bp):   
CTTCCGATTCTGGAGATGCTGCCTCCCCTGAACTCAAAAGTACCCTTTCAGTTTCCGGAGGCGGC
ATGCTATCAAAAGGATTCTCCC

Found at i:1373 original size:16 final size:18

Alignment explanation


    Indices: 1341--1374  Score: 54
    Period size: 16  Copynumber: 2.0  Consensus size: 18

       1331 TAAGTGATAT

                              
       1341 TAAATAAATACTTAAATA
          1 TAAATAAATACTTAAATA

                              
       1359 TAAA-AAATA-TTAAATA
          1 TAAATAAATACTTAAATA

       1375 CTCAATCTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    7  0.44
  17    5  0.31
  18    4  0.25

ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32


Consensus pattern (18 bp):   
TAAATAAATACTTAAATA
Done.