genome.fa.s12232.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012232.1 Kokia drynarioides strain JFW-HI SEQ_127233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26803

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676--983	29	10.5	30	77	9	194	34	24	1	39	1.65
690--1003	89	3.6	88	77	9	311	35	22	1	40	1.63
6645--6677	6	5.3	6	92	7	57	84	0	15	0	0.61
7608--7934	49	6.7	49	73	7	243	35	16	30	17	1.92
7608--7940	98	3.4	98	78	6	325	35	16	30	17	1.93
8130--8154	11	2.3	11	100	0	50	56	16	8	20	1.65
8206--8308	39	2.6	39	78	0	98	26	29	14	30	1.95
8325--8443	44	2.7	45	84	6	136	29	24	20	25	1.98
8542--8648	46	2.3	45	82	6	133	31	26	17	24	1.97
8804--8893	47	1.9	47	86	0	126	41	16	18	23	1.90
8928--9094	85	2.0	85	87	0	244	34	15	23	26	1.94
9012--9103	48	1.9	48	88	0	139	34	17	25	22	1.96
8714--9370	209	3.1	209	86	2	917	36	17	21	23	1.94
9135--9304	86	2.0	85	80	7	193	38	16	20	24	1.92
9057--9666	286	2.1	285	88	2	884	36	18	21	23	1.95
9267--9446	76	2.4	76	91	1	290	36	20	19	23	1.95
9422--9589	86	2.0	85	88	3	248	35	15	23	25	1.94
9468--9820	162	2.2	162	88	2	521	35	17	22	24	1.95
11647--11810	30	5.5	30	84	5	197	30	25	2	42	1.68
11625--11953	90	3.7	89	78	6	267	33	27	2	36	1.71
11775--11943	29	5.8	28	77	10	142	33	28	3	33	1.75
11775--11948	59	3.0	58	78	10	176	33	29	3	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11665--11976	88	3.5	88	80	7	258	32	25	3	38	1.73
16341--16441	49	2.1	49	98	0	193	34	15	21	27	1.94
16350--16457	49	2.2	49	90	3	164	35	17	20	26	1.95
19404--19546	59	2.4	60	86	5	193	27	11	10	50	1.72
19404--19562	59	2.7	59	84	4	160	27	12	10	50	1.72
23627--23678	21	2.5	21	80	0	68	36	23	15	25	1.93
23739--23795	21	2.5	24	83	8	75	43	29	10	15	1.80
24350--24439	40	2.3	40	88	1	137	25	22	8	43	1.82
25172--25230	30	2.0	30	100	0	118	27	10	20	42	1.84

Tables:   1

The End!