genome.fa.s12235.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012235.1 Kokia drynarioides strain JFW-HI SEQ_127236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  288195

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8934--9054	42	2.9	42	87	3	165	26	24	9	39	1.85
14288--14359	24	3.0	22	82	12	72	45	4	1	48	1.30
14177--14429	138	1.8	138	82	6	325	43	9	1	45	1.47
17441--17481	15	2.7	16	81	11	50	29	2	4	63	1.28
20303--20421	52	2.3	53	91	1	186	37	24	13	24	1.91
27419--27649	52	4.4	52	91	0	363	34	23	14	27	1.94
29617--29689	31	2.3	32	83	9	87	26	9	16	47	1.77
29764--29840	24	3.2	24	61	14	59	20	10	14	54	1.69
29756--29935	48	3.8	48	91	0	288	25	11	13	50	1.74
30351--30507	78	2.0	76	88	2	233	38	19	15	26	1.92
32246--32287	21	2.0	21	81	9	50	64	0	26	9	1.24
34250--34408	80	2.0	78	87	2	228	37	16	16	28	1.91
38365--38405	14	2.8	14	82	10	55	53	29	0	17	1.44
39009--39049	22	1.9	21	85	5	55	48	0	7	43	1.30
40173--40339	86	1.9	86	90	0	262	22	23	32	21	1.98
40205--40377	43	4.0	43	71	12	140	20	23	33	22	1.97
40205--40472	129	2.1	129	83	2	342	21	21	34	22	1.97
40333--40965	86	7.3	86	78	4	562	24	22	31	22	1.98
40333--40825	258	1.9	258	82	4	627	25	21	30	22	1.99
40761--40848	43	2.0	43	82	4	106	23	23	29	22	1.99
40785--40890	43	2.5	43	84	3	124	19	22	31	26	1.98
41069--41141	33	2.2	33	87	4	112	19	26	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40734--41235	239	2.1	244	91	3	816	25	23	31	20	1.98
48144--48219	33	2.3	32	86	6	116	19	26	31	22	1.98
55071--55324	129	2.0	129	96	0	463	38	18	17	25	1.92
58356--58401	23	1.9	25	91	8	78	76	0	0	23	0.79
58342--58404	10	6.3	10	75	15	51	71	1	0	26	0.95
64757--64801	16	3.0	15	87	12	58	28	4	0	66	1.11
64757--64798	8	5.7	7	79	20	50	28	4	0	66	1.12
76597--76664	21	3.1	21	67	22	59	33	10	19	36	1.85
81144--81217	22	3.4	21	76	20	80	25	10	25	37	1.88
110207--110305	48	2.1	48	100	0	198	35	20	6	38	1.77
110515--110665	80	1.9	80	85	0	212	35	21	17	26	1.95
124370--124414	17	2.6	17	85	0	54	22	11	8	57	1.60
126592--126632	21	2.0	21	85	0	55	24	12	7	56	1.61
130454--130488	17	2.1	17	100	0	70	48	5	5	40	1.51
143616--143669	25	2.2	24	81	18	58	68	3	9	18	1.32
144185--144470	152	1.9	154	81	8	352	41	10	3	44	1.57
144196--144737	268	2.0	268	96	0	987	41	10	3	44	1.56
144465--144981	152	3.5	149	80	10	559	41	8	3	46	1.52
144701--144743	19	2.3	18	84	4	50	51	4	4	39	1.44
144837--144892	19	2.8	19	75	5	58	50	3	3	42	1.37
146386--146423	20	2.0	20	89	5	60	18	15	15	50	1.79
152215--152287	27	2.7	27	89	0	92	27	15	23	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152224--152308	27	3.1	28	83	5	84	27	17	22	32	1.96
154317--154364	21	2.3	21	85	7	62	33	2	20	43	1.64
154667--154714	24	2.0	24	84	4	62	31	12	22	33	1.91
156471--156544	21	3.4	21	76	20	80	28	9	22	39	1.85
161335--161376	21	2.0	21	90	4	68	42	11	0	45	1.41
165785--166810	43	23.7	43	80	4	925	19	25	31	23	1.98
165819--165922	51	2.0	51	92	3	174	20	26	33	19	1.96
170886--170923	18	2.1	18	85	9	51	57	13	13	15	1.65
171341--171380	15	2.9	14	86	13	57	0	40	0	60	0.97
192023--192079	22	2.6	22	80	0	69	40	15	7	36	1.75
195331--195383	20	2.5	22	79	14	58	75	7	11	5	1.18
214223--214262	20	2.0	20	85	9	55	40	0	15	45	1.46
215596--215634	21	1.9	21	94	5	71	20	0	2	76	0.90
216978--217129	58	2.6	59	86	8	197	38	17	3	40	1.68
216978--217129	30	5.2	30	83	6	170	38	17	3	40	1.68
217044--217139	30	3.2	29	82	5	120	36	19	5	38	1.75
228175--228201	2	13.5	2	100	0	54	48	0	0	51	1.00
228813--228854	17	2.5	17	85	14	52	54	9	19	16	1.69
240580--240728	39	3.7	39	79	7	156	29	26	20	23	1.99
242628--242789	29	5.6	29	78	7	150	40	19	3	37	1.68
242629--242937	30	10.5	30	80	8	194	38	19	3	38	1.70
242628--242786	58	2.8	57	77	8	178	40	20	3	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242744--242948	30	6.9	30	84	4	220	37	19	4	39	1.73
244095--244129	17	2.1	17	100	0	70	57	5	14	22	1.59
261590--261644	6	9.2	6	73	15	51	34	1	1	61	1.17
261870--261902	14	2.4	14	90	10	50	63	3	0	33	1.10
263016--263065	11	4.6	11	83	11	59	30	30	0	40	1.57
263162--263249	32	2.8	30	80	11	104	36	13	11	38	1.81
268468--268527	18	3.3	18	73	17	70	45	18	6	30	1.75
268461--268531	36	2.0	36	100	0	142	47	15	5	30	1.68
274031--274056	2	13.0	2	100	0	52	50	50	0	0	1.00
274635--274714	40	2.0	40	100	0	160	17	27	10	45	1.80
274942--275147	30	6.9	30	81	4	209	39	19	4	36	1.73
274942--275147	90	2.3	90	83	3	236	39	19	4	36	1.73
286643--286796	50	3.1	49	82	5	166	37	18	23	20	1.95
286821--286952	39	3.3	40	76	7	144	31	28	15	25	1.96
287707--287747	21	2.0	21	95	0	73	68	0	0	31	0.90
288140--288181	2	21.0	2	100	0	84	50	50	0	0	1.00

Tables:   1

The End!