Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012236.1 Kokia drynarioides strain JFW-HI SEQ_127237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1665
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36


Found at i:547 original size:47 final size:47

Alignment explanation


    Indices: 489--580  Score: 123
    Period size: 47  Copynumber: 2.0  Consensus size: 47

        479 TAATTAACCA

                *         *   *                             
        489 CCCATTTAGAAGTAGAATTGATAAGA-CAAGTGTGTCAAATTTCAAAG
          1 CCCACTTAGAAGTAAAATAGATAAGATCAA-TGTGTCAAATTTCAAAG

                                  *    *                 
        536 CCCACTTAGAAGTAAAATAGATGAGATGAATGTGTCAAATTTCAA
          1 CCCACTTAGAAGTAAAATAGATAAGATCAATGTGTCAAATTTCAA

        581 TGCAATTATG


Statistics
Matches: 39,  Mismatches: 5, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  47   37  0.95
  48    2  0.05

ACGTcount: A:0.41, C:0.13, G:0.18, T:0.27


Consensus pattern (47 bp):   
CCCACTTAGAAGTAAAATAGATAAGATCAATGTGTCAAATTTCAAAG
Done.