Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012238.1 Kokia drynarioides strain JFW-HI SEQ_127239, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3152
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2595 original size:23 final size:23

Alignment explanation


    Indices: 2566--2619  Score: 90
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       2556 CATCCATCCT

                                   
       2566 TGCTGACTAGACCCTCTAGAAGC
          1 TGCTGACTAGACCCTCTAGAAGC

              *          *         
       2589 TGTTGACTAGACCTTCTAGAAGC
          1 TGCTGACTAGACCCTCTAGAAGC

                    
       2612 TGCTGACT
          1 TGCTGACT

       2620 GTATGCCACG


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28


Consensus pattern (23 bp):   
TGCTGACTAGACCCTCTAGAAGC
Done.