Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01001224.1 Kokia drynarioides strain JFW-HI SEQ_112578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1947
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Found at i:329 original size:20 final size:20
Alignment explanation
Indices: 304--365 Score: 97
Period size: 20 Copynumber: 3.1 Consensus size: 20
294 GGTTTCACTG
* *
304 TTTTATTCAATCCTTTTCCA
1 TTTTATTAAATCATTTTCCA
324 TTTTATTAAATCATTTTCCA
1 TTTTATTAAATCATTTTCCA
*
344 TTTTATTAAATCATTTACCA
1 TTTTATTAAATCATTTTCCA
364 TT
1 TT
366 GAAGAAGAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.27, C:0.18, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTATTAAATCATTTTCCA
Found at i:1046 original size:221 final size:221
Alignment explanation
Indices: 352--1947 Score: 2435
Period size: 221 Copynumber: 7.2 Consensus size: 221
342 CATTTTATTA
* * *
352 AATCATTTACCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* *
417 TTTAAGCCACACCAACAATTTCATCCTGTATTTCAGGATTTTAATTTTAATTTG-TTCTTTTCAG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATT-TTTTCAG
* * * *
481 GATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTTGCGTAAAATTAGTAGAAAAGGGACAC
130 GATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACAC
*
546 AAATGACGTGGTGTCACTGTTACATTC
195 AAATGACGTGGTGTCACTGTTTCATTC
* * *
573 AATCCTTTTCCGTTGAAGAAGAGAAAGAATTGTATGGAACAGGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* *
638 TTTATGTCACACCAACAATTTCATCCTGAATTTCAAGATTTTAATTTTAATTTG-TTTTTCTCAG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTT-TCAG
702 GATG-AAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACAC
130 GATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACAC
766 AAATGACGTGGTGTCACTGTTTCATTC
195 AAATGACGTGGTGTCACTGTTTCATTC
* *
793 AATCCTTTTCCATTGAATAAGAGAAAGGATTGTATGAAACAGGGTTATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * *
858 TTTATGCCACACCAACAATTTCATCCTGAATTTCAAGATTTTAACTTTAATTTGATTTTCTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
*
923 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGCGACACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACA
*
988 AATGACGTTGTGTCACTGTTTCATTC
196 AATGACGTGGTGTCACTGTTTCATTC
* * *
1014 AATCATTTTCCATTGAAGAAGAGAATGGATTGTATGAAACAAGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* ** * *
1079 TTTATGCCACAGCAACAATTTCATTTTGAATTTCAGGATTTTAATTTTATTTTTATTTTTTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
*
1144 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGAGTAAAACTATTGGAAAAGGGACACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACA
* *
1209 AATGACGTTGTGTCACTGTTTTATTC
196 AATGACGTGGTGTCACTGTTTCATTC
*
1235 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAGAGGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * *
1300 TTTATGCCACACCAACAATTTCAACCTGTATTTCTGGATTTTAATTTTAATTT-ATTTTTTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
* * * *
1364 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATATGGCGTAAAATTATTAGAAAAGGGATACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACA
*
1429 GATGACGTGGTGTCACTGTTTCATTC
196 AATGACGTGGTGTCACTGTTTCATTC
* * ** * * *
1455 AATCCTTTTCCGTTGAAGAAGAGAAAGGATTGTATTAAACAGTTAAATTATCACTTTGCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * * * *
1520 TTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTATTTTTATTTTTATTTTGTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
* * * * **
1585 ATGAAAATGTTAAAATTAAGAATGAAAAAAATGATATGGCGTAAAACTATAAGAAAAGGGACACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACA
* *
1650 AATGACGTGGTGTCAGTATTTCATTC
196 AATGACGTGGTGTCACTGTTTCATTC
* * *
1676 AATCCGTTTCCATTGAAGAAGAGAAAGGATTGTATAAAATAGGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * * *
1741 TTTTTGCCACACCAACAATTTCATCCTAAATTTCAGGATTTTAATTTGAATTTGATATTTTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
* * * *
1806 ATGAAAAGGATGAAATTAAGAATAAAAATACTGATGCGGCGTAAAACTATTGGAAAAGGGACACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACA
* * * *
1871 AATGAAGTTGTGTCACTTTTTCGTTC
196 AATGACGTGGTGTCACTGTTTCATTC
* *
1897 AATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTAT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTAT
Statistics
Matches: 1249, Mismatches: 122, Indels: 8
0.91 0.09 0.01
Matches are distributed among these distances:
220 403 0.32
221 846 0.68
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (221 bp):
AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACA
AATGACGTGGTGTCACTGTTTCATTC
Found at i:1365 original size:441 final size:442
Alignment explanation
Indices: 352--1947 Score: 2455
Period size: 441 Copynumber: 3.6 Consensus size: 442
342 CATTTTATTA
* * *
352 AATCATTTACCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* *
417 TTTAAGCCACACCAACAATTTCATCCTGTATTTCAGGATTTTAATTTTAATTTG-TTCTTTTCAG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATT-TTTTCAG
* * *
481 GATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTTGCGTAAAATTAGTAGAAAAGGGACAC
130 GATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTAGAAAAGGGACAC
* * * * *
546 AAATGACGTGGTGTCACTGTTACATTCAATCCTTTTCCGTTGAAGAAGAGAAAGAATTGTATGGA
195 AAATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAA
* * *
611 ACAGGGATATTATCCCTTTCCAATAGTTTTATGTCACACCAACAATTTCATCCTGAATTTCAAGA
260 ACAAGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGA
*
676 TTTTAATTTTAATTTGT-TTTTCTCAGGATG-AAATGTTGAAATTAAGAATGAAAATACTGATGT
325 TTTTAATTTT-ATTTTTATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGT
739 GGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTC
389 GGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTC
* *
793 AATCCTTTTCCATTGAATAAGAGAAAGGATTGTATGAAACAGGGTTATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * *
858 TTTATGCCACACCAACAATTTCATCCTGAATTTCAAGATTTTAACTTTAATTTGATTTTCTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
* *
923 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGCGACACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTAGAAAAGGGACACA
* *
988 AATGACGTTGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAAGAGAATGGATTGTATGAAA
196 AATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAA
* **
1053 CAAGGATATTATCCCTTTCCAATAGTTTTATGCCACAGCAACAATTTCATTTTGAATTTCAGGAT
261 CAAGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGAT
*
1118 TTTAATTTTATTTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
326 TTTAATTTTATTTTTATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* * *
1183 AGTAAAACTATTGGAAAAGGGACACAAATGACGTTGTGTCACTGTTTTATTC
391 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTC
*
1235 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAGAGGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * *
1300 TTTATGCCACACCAACAATTTCAACCTGTATTTCTGGATTTTAATTTTAATTT-ATTTTTTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
* * *
1364 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATATGGCGTAAAATTATTAGAAAAGGGATACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTAGAAAAGGGACACA
* * * *
1429 GATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCGTTGAAGAAGAGAAAGGATTGTATTAAA
196 AATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAA
* * * * *
1494 C-AGTTAAATTATCACTTTGCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGA
261 CAAG-GATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGA
* * * * * *
1558 TTTTATTTTTATTTTTATTTTGTCAGGATGAAAATGTTAAAATTAAGAATGAAAAAAATGATATG
325 TTTTAATTTTATTTTTATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTG
** * *
1623 GCGTAAAACTATAAGAAAAGGGACACAAATGACGTGGTGTCAGTATTTCATTC
390 GCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTC
* * *
1676 AATCCGTTTCCATTGAAGAAGAGAAAGGATTGTATAAAATAGGGATATTATCCCTTTCCAATAGT
1 AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
* * * *
1741 TTTTTGCCACACCAACAATTTCATCCTAAATTTCAGGATTTTAATTTGAATTTGATATTTTCAGG
66 TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
* * * * *
1806 ATGAAAAGGATGAAATTAAGAATAAAAATACTGATGCGGCGTAAAACTATTGGAAAAGGGACACA
131 ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTAGAAAAGGGACACA
* * * *
1871 AATGAAGTTGTGTCACTTTTTCGTTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAA
196 AATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAA
1936 CAAGGATATTAT
261 CAAGGATATTAT
Statistics
Matches: 1048, Mismatches: 101, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
440 7 0.01
441 712 0.68
442 327 0.31
443 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (442 bp):
AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGT
TTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGG
ATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTAGAAAAGGGACACA
AATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAA
CAAGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGAT
TTTAATTTTATTTTTATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTC
Found at i:1627 original size:662 final size:661
Alignment explanation
Indices: 343--1947 Score: 2453
Period size: 662 Copynumber: 2.4 Consensus size: 661
333 ATCATTTTCC
* * *
343 ATTTTATTAAATCATTTACCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTT
1 ATTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTT
* * *
408 TCCAATAGTTTTAAGCCACACCAACAATTTCATCCTGTATTTCAGGATTTTAATTTTAATTTGT-
66 TCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTT-ATTTTTA
* * * * *
472 TCTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTTGCGTAAAATTAGTAGAA
130 TATTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAA
* ** * *
537 AAGGGACACAAATGACGTGGTGTCACTGTTACATTCAATCCTTTTCCGTTGAAGAAGAGAAAGAA
195 AAGGGACACAAATGACGTTGTGTCACTGTTTTATTCAATCCTTTTCCATTGAAGAAGAGAAAGGA
* * *
602 TTGTATGGAACAGGGATATTATCCCTTTCCAATAGTTTTATGTCACACCAACAATTTCATCCTGA
260 TTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCAACCTGA
*
667 ATTTCAAGATTTTAATTTTAATTTGTTTTTCTCAGGATGAAATGTTGAAATTAAGAATGAAAATA
325 ATTTCAAGATTTTAATTTTAATTTATTTTTCTCAGGATGAAATGTTGAAATTAAGAATGAAAATA
* *
732 CTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATC
390 CTGATATGGCGTAAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATC
* *
797 CTTTTCCATTGAATAAGAGAAAGGATTGTATGAAACAGGGTTATTATCCCTTTCCAATAGTTTTA
455 CTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACA-GGTTATTATCACTTTCCAATAGTTTTA
862 TGCCACACCAACAATTTCATCCTGAATTTCAAGATTTTAACTTTAATTTGATTTTCTCAGGATGA
519 TGCCACACCAACAATTTCATCCTGAATTTCAAGATTTTAACTTTAATTTGATTTTCTCAGGATGA
* * * * **
927 AAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGCGACACAAATG
584 AAATGTTAAAATTAAGAATGAAAAAAATGATATGGCGTAAAACTATAAGAAAAGCGACACAAATG
*
992 ACGTTGTGTCACT
649 ACGTGGTGTCACT
* *
1005 GTTTCATTCAATCATTTTCCATTGAAGAAGAGAATGGATTGTATGAAACAAGGATATTATCCCTT
1 ATTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTT
* **
1070 TCCAATAGTTTTATGCCACAGCAACAATTTCATTTTGAATTTCAGGATTTTAATTTTATTTTTAT
66 TCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTATTTTTAT
* *
1135 TTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGAGTAAAACTATTGGAAA
131 ATTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAA
1200 AGGGACACAAATGACGTTGTGTCACTGTTTTATTCAATCCTTTTCCATTGAAGAAGAGAAAGGAT
196 AGGGACACAAATGACGTTGTGTCACTGTTTTATTCAATCCTTTTCCATTGAAGAAGAGAAAGGAT
* *
1265 TGTATGAAAGAGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCAACCTGTA
261 TGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCAACCTGAA
**
1330 TTTCTGGATTTTAATTTTAATTTATTTTT-TCAGGATGAAAATGTTGAAATTAAGAATGAAAATA
326 TTTCAAGATTTTAATTTTAATTTATTTTTCTCAGGATG-AAATGTTGAAATTAAGAATGAAAATA
* * *
1394 CTGATATGGCGTAAAATTATTAGAAAAGGGATACAGATGACGTGGTGTCACTGTTTCATTCAATC
390 CTGATATGGCGTAAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATC
* * *
1459 CTTTTCCGTTGAAGAAGAGAAAGGATTGTATTAAACA-GTTAAATTATCACTTTGCAATAGTTTT
455 CTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGTT--ATTATCACTTTCCAATAGTTTT
* * ** * * *
1523 ATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTATTTTTATTTTTATTTTGTCAGGATG
518 ATGCCACACCAACAATTTCATCCTGAATTTCAAGATTTTAACTTTAATTTGATTTTCTCAGGATG
*
1588 AAAATGTTAAAATTAAGAATGAAAAAAATGATATGGCGTAAAACTATAAGAAAAGGGACACAAAT
583 AAAATGTTAAAATTAAGAATGAAAAAAATGATATGGCGTAAAACTATAAGAAAAGCGACACAAAT
*
1653 GACGTGGTGTCAGT
648 GACGTGGTGTCACT
** * * *
1667 ATTTCATTCAATCCGTTTCCATTGAAGAAGAGAAAGGATTGTATAAAATAGGGATATTATCCCTT
1 ATTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTT
* * * * *
1732 TCCAATAGTTTTTTGCCACACCAACAATTTCATCCTAAATTTCAGGATTTTAATTTGAATTTGAT
66 TCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTATTTTTAT
* * * *
1797 ATTTTCAGGATGAAAAGGATGAAATTAAGAATAAAAATACTGATGCGGCGTAAAACTATTGGAAA
131 ATTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAA
* * *
1862 AGGGACACAAATGAAGTTGTGTCACT-TTTTCGTTCAATCATTTTCCATTGAAGAAGAGAAAGGA
196 AGGGACACAAATGACGTTGTGTCACTGTTTT-ATTCAATCCTTTTCCATTGAAGAAGAGAAAGGA
*
1926 TTGTATGAAACAAGGATATTAT
260 TTGTATGAAACAGGGATATTAT
Statistics
Matches: 856, Mismatches: 82, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
660 3 0.00
661 17 0.02
662 836 0.98
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (661 bp):
ATTTCATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAAGGATATTATCCCTT
TCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTATTTTTAT
ATTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAA
AGGGACACAAATGACGTTGTGTCACTGTTTTATTCAATCCTTTTCCATTGAAGAAGAGAAAGGAT
TGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCAACCTGAA
TTTCAAGATTTTAATTTTAATTTATTTTTCTCAGGATGAAATGTTGAAATTAAGAATGAAAATAC
TGATATGGCGTAAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCC
TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAACAGGTTATTATCACTTTCCAATAGTTTTATG
CCACACCAACAATTTCATCCTGAATTTCAAGATTTTAACTTTAATTTGATTTTCTCAGGATGAAA
ATGTTAAAATTAAGAATGAAAAAAATGATATGGCGTAAAACTATAAGAAAAGCGACACAAATGAC
GTGGTGTCACT
Done.