Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012245.1 Kokia drynarioides strain JFW-HI SEQ_127246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71500
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Warning! 26 characters in sequence are not A, C, G, or T
Found at i:2846 original size:20 final size:19
Alignment explanation
Indices: 2814--2899 Score: 55
Period size: 20 Copynumber: 4.2 Consensus size: 19
2804 GTTATATAAT
2814 TTTTAATAAATTTTTTACAA
1 TTTTAA-AAATTTTTTACAA
** *
2834 TTTTAAAATATTTTAAAAAA
1 TTTTAAAA-ATTTTTTACAA
* * *
2854 TACTTAATAATTATTTACAA
1 T-TTTAAAAATTTTTTACAA
*
2874 TTTTTAAATATTATTTTTACAA
1 -TTTTAAA-AAT-TTTTTACAA
2896 TTTT
1 TTTT
2900 TTTGTAACGC
Statistics
Matches: 48, Mismatches: 13, Indels: 9
0.69 0.19 0.13
Matches are distributed among these distances:
19 2 0.04
20 26 0.54
21 12 0.25
22 8 0.17
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAAAAATTTTTTACAA
Found at i:4690 original size:31 final size:31
Alignment explanation
Indices: 4655--4714 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
4645 GAGAAAATTG
4655 TTTTTACACAAATGAAAAATTGAAAACATTC
1 TTTTTACACAAATGAAAAATTGAAAACATTC
4686 TTTTTACACAAATGAAAAATTGAAAACAT
1 TTTTTACACAAATGAAAAATTGAAAACAT
4715 ACTTCTCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.32
Consensus pattern (31 bp):
TTTTTACACAAATGAAAAATTGAAAACATTC
Found at i:5525 original size:2 final size:2
Alignment explanation
Indices: 5518--5542 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5508 TGTGTATGCA
5518 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
5543 AATTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:10187 original size:38 final size:38
Alignment explanation
Indices: 10136--10212 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
10126 TTTGCCTACT
*
10136 TCAATTTCTTGCCTGATCGCAACGTGATCACCTTTACA
1 TCAATTTATTGCCTGATCGCAACGTGATCACCTTTACA
10174 TCAATTTATTGCCTGATCGCAACGTGATCACCTTTACA
1 TCAATTTATTGCCTGATCGCAACGTGATCACCTTTACA
10212 T
1 T
10213 GCTCCTTCCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (38 bp):
TCAATTTATTGCCTGATCGCAACGTGATCACCTTTACA
Found at i:11516 original size:30 final size:29
Alignment explanation
Indices: 11361--11652 Score: 220
Period size: 30 Copynumber: 9.9 Consensus size: 29
11351 GGGAATTCAA
* *
11361 GGTCAAAATGAAAATTTGGAAAAGTTTAGAG
1 GGTCAAAATGTAATTTTGGAAAAGTTT--AG
* * **
11392 GGTAAAAATGTAATTTTAGGAAAACTCGA-
1 GGTCAAAATGTAATTTT-GGAAAAGTTTAG
*
11421 GGTCAAAATGCAA-TTTGGAGAAA-TTT-G
1 GGTCAAAATGTAATTTTGGA-AAAGTTTAG
* ** *
11448 GAGTTAAAA-CAAGATTTTGGATAAGTTTAG
1 G-GTCAAAATGTA-ATTTTGGAAAAGTTTAG
* *
11478 GGTCAAAATATAATTTTGGATAAGTTTAAG
1 GGTCAAAATGTAATTTTGGAAAAGTTT-AG
* * *
11508 GGTTAAAATGCAATTTAGGAAAAGTTTAGG
1 GGTCAAAATGTAATTTTGGAAAAGTTTA-G
* * *
11538 GGTTATAATGTAATTTTAGAAAAGTTTAG
1 GGTCAAAATGTAATTTTGGAAAAGTTTAG
11567 GGTCAAAATGTAATTTT-GAAAAGTTTAGG
1 GGTCAAAATGTAATTTTGGAAAAGTTTA-G
*
11596 TGGTCAAAATGTAATTTTGG-AAAGTTTGG
1 -GGTCAAAATGTAATTTTGGAAAAGTTTAG
* * * *
11625 TGGTTAAAATATGATTTTTGAAAAGTTT
1 -GGTCAAAATGTAATTTTGGAAAAGTTT
11653 GGTTGTTAAA
Statistics
Matches: 213, Mismatches: 33, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
27 6 0.03
28 25 0.12
29 76 0.36
30 84 0.39
31 15 0.07
32 7 0.03
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.34
Consensus pattern (29 bp):
GGTCAAAATGTAATTTTGGAAAAGTTTAG
Found at i:11634 original size:59 final size:57
Alignment explanation
Indices: 11361--11652 Score: 209
Period size: 59 Copynumber: 4.9 Consensus size: 57
11351 GGGAATTCAA
* * * * * *
11361 GGTCAAAATGAAAATTTGGAAAAGTTTAGAGGGTAAAAATGTAATTTTAGGAAAA--CTCGA
1 GGTCAAAATGTAATTTTGG-AAAGTTT--AGGGTTAAAATGTAATTTT--GAAAAGTTTAGG
* * ** *
11421 GGTCAAAATGCAA-TTTGGAGAAATTT-GGAGTTAAAA-CAAGATTTTGGATAAGTTTA-G
1 GGTCAAAATGTAATTTTGGA-AAGTTTAGG-GTTAAAATGTA-ATTTT-GAAAAGTTTAGG
* * *
11478 GGTCAAAATATAATTTTGGATAAGTTTAAGGGTTAAAATGCAATTTAGGAAAAGTTTAGG
1 GGTCAAAATGTAATTTTGGA-AAGTTT-AGGGTTAAAATGTAATTT-TGAAAAGTTTAGG
* * * *
11538 GGTTATAATGTAATTTTAGAAAAGTTTAGGGTCAAAATGTAATTTTGAAAAGTTTAGG
1 GGTCAAAATGTAATTTT-GGAAAGTTTAGGGTTAAAATGTAATTTTGAAAAGTTTAGG
* * *
11596 TGGTCAAAATGTAATTTTGGAAAGTTTGGTGGTTAAAATATGATTTTTGAAAAGTTT
1 -GGTCAAAATGTAATTTTGGAAAGTTTAG-GGTTAAAATGT-AATTTTGAAAAGTTT
11653 GGTTGTTAAA
Statistics
Matches: 186, Mismatches: 31, Indels: 30
0.75 0.13 0.12
Matches are distributed among these distances:
56 8 0.04
57 22 0.12
58 34 0.18
59 70 0.38
60 50 0.27
61 2 0.01
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.34
Consensus pattern (57 bp):
GGTCAAAATGTAATTTTGGAAAGTTTAGGGTTAAAATGTAATTTTGAAAAGTTTAGG
Found at i:11653 original size:30 final size:29
Alignment explanation
Indices: 11508--11681 Score: 138
Period size: 30 Copynumber: 5.9 Consensus size: 29
11498 TAAGTTTAAG
* **
11508 GGTTAAAATGCAATTTAGGAAAAGTTTAGG-
1 GGTTAAAATG-TATTTTTGAAAAGTTT-GGT
* * *
11538 GGTTATAATGTAATTTTAGAAAAGTTTAG-
1 GGTTAAAATGT-ATTTTTGAAAAGTTTGGT
* *
11567 GGTCAAAATGTAATTTTGAAAAGTTTAGGT
1 GGTTAAAATGTATTTTTGAAAAGTTT-GGT
* * *
11597 GGTCAAAATGTAATTTTGGAAAGTTTGGT
1 GGTTAAAATGTATTTTTGAAAAGTTTGGT
*
11626 GGTTAAAATATGATTTTTGAAAAGTTTGGT
1 GGTTAAAATGT-ATTTTTGAAAAGTTTGGT
* *
11656 TGTTAAAATATGATTTTT-ACAAAGTT
1 GGTTAAAATGT-ATTTTTGA-AAAGTT
11682 CATAGGCCTT
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
28 13 0.11
29 24 0.20
30 86 0.70
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.39
Consensus pattern (29 bp):
GGTTAAAATGTATTTTTGAAAAGTTTGGT
Found at i:12587 original size:3 final size:3
Alignment explanation
Indices: 12579--12662 Score: 168
Period size: 3 Copynumber: 28.0 Consensus size: 3
12569 AATCTCTCTT
12579 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
12627 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
12663 ATTGTTTTAA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13351 original size:16 final size:17
Alignment explanation
Indices: 13330--13368 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
13320 CATTATTTAT
*
13330 TTTAAA-TTTAAATAAA
1 TTTAAACTTAAAATAAA
13346 TTTAAACTTAAAATAAA
1 TTTAAACTTAAAATAAA
13363 TTTAAA
1 TTTAAA
13369 AATAGGTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTAAACTTAAAATAAA
Found at i:14072 original size:39 final size:39
Alignment explanation
Indices: 13943--14161 Score: 167
Period size: 39 Copynumber: 5.6 Consensus size: 39
13933 GATAGTGATA
* * * *
13943 TGCCCCTGGCTCGAGGTAAAAGATC-AATTGGCTGCAATT
1 TGCCCCAGGCTCGGGGTAAGAGATCGAA-TGGCTACAATT
* * *** * *
13982 TACCCCAAGCTTAAGGTAAGAGATTGAATGGCTACAATC
1 TGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTACAATT
*
14021 TGCCCCAAGCTCGGGGTAAGAGATCGAATGGCTACAATT
1 TGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTACAATT
* * *
14060 TGCACCAGGCTCGAGGTAAGAGATCGATTGATGG-T--GATT
1 TGCCCCAGGCTCGGGGTAAGAGATCGA---ATGGCTACAATT
** * * * *
14099 TGCCTTAGGCTCGGGGTAGGAAATCGGATGGCTGCAATT
1 TGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTACAATT
* *
14138 TGCCCCAGGCTTGGGGTAGGAGAT
1 TGCCCCAGGCTCGGGGTAAGAGAT
14162 TGACTGATGG
Statistics
Matches: 142, Mismatches: 31, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
36 4 0.03
37 1 0.01
39 130 0.92
40 2 0.01
41 1 0.01
42 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (39 bp):
TGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTACAATT
Found at i:14111 original size:78 final size:78
Alignment explanation
Indices: 14018--14207 Score: 229
Period size: 78 Copynumber: 2.4 Consensus size: 78
14008 AATGGCTACA
* *
14018 ATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGGCTACAATTTGCACCAGGCTCGAGGTAAGAGA
1 ATCTGCCTCAGGCTCGGGGTAAGAGATCGAATGGCTACAATTTGCACCAGGCTCGAGGTAAGAGA
*
14083 TCGATTGATGGTG
66 TCGACTGATGGTG
* * * * * * * * * *
14096 ATTTGCCTTAGGCTCGGGGTAGGAAATCGGATGGCTGCAATTTGCCCCAGGCTTGGGGTAGGAGA
1 ATCTGCCTCAGGCTCGGGGTAAGAGATCGAATGGCTACAATTTGCACCAGGCTCGAGGTAAGAGA
*
14161 TTGACTGATGGTG
66 TCGACTGATGGTG
*
14174 ATCTGCCTCAGGCTCGGGGT-AGAAGATTGAATGG
1 ATCTGCCTCAGGCTCGGGGTAAG-AGATCGAATGG
14208 TTGCAGGTGA
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
77 1 0.01
78 90 0.99
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.24
Consensus pattern (78 bp):
ATCTGCCTCAGGCTCGGGGTAAGAGATCGAATGGCTACAATTTGCACCAGGCTCGAGGTAAGAGA
TCGACTGATGGTG
Found at i:14334 original size:8 final size:7
Alignment explanation
Indices: 14307--14368 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
14297 TTCTTTTCCC
14307 TCTTTTT
1 TCTTTTT
*
14314 TCTATTT
1 TCTTTTT
*
14321 TATTTTT
1 TCTTTTT
*
14328 CCTTTTT
1 TCTTTTT
14335 TCTTTTCT
1 TCTTTT-T
14343 T-TTCTTT
1 TCTT-TTT
*
14350 TATTTTT
1 TCTTTTT
14357 TCTTTTT
1 TCTTTTT
14364 TCTTT
1 TCTTT
14369 CTTTTCTTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.81
Consensus pattern (7 bp):
TCTTTTT
Found at i:14340 original size:5 final size:5
Alignment explanation
Indices: 14332--14376 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
14322 ATTTTTCCTT
*
14332 TTTTC TTTTC TTTTC TTTTA TTTT- TTCTT- TTTTC -TTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TT
14377 CCTTTATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
4 8 0.22
5 28 0.78
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:14356 original size:23 final size:23
Alignment explanation
Indices: 14330--14373 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
14320 TTATTTTTCC
14330 TTTTTTCTTTTCT-TTTCTTTTA
1 TTTTTTCTTTTCTCTTTCTTTTA
*
14352 TTTTTTCTTTTTTCTTTCTTTT
1 TTTTTTCTTTTCTCTTTCTTTT
14374 CTTCCTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (23 bp):
TTTTTTCTTTTCTCTTTCTTTTA
Found at i:14369 original size:28 final size:29
Alignment explanation
Indices: 14318--14376 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
14308 CTTTTTTCTA
14318 TTTTATTTTTCCTTTTTTCTTTTCTTTTC
1 TTTTATTTTTCCTTTTTTCTTTTCTTTTC
*
14347 TTTTATTTTTTCTTTTTTC-TTTCTTTTC
1 TTTTATTTTTCCTTTTTTCTTTTCTTTTC
14375 TT
1 TT
14377 CCTTTATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.81
Consensus pattern (29 bp):
TTTTATTTTTCCTTTTTTCTTTTCTTTTC
Found at i:19440 original size:60 final size:59
Alignment explanation
Indices: 19268--19612 Score: 292
Period size: 60 Copynumber: 5.8 Consensus size: 59
19258 GGGAATATGG
* * * ** **
19268 GGTCAAAATGAAATTTTGGAAAAGTTTAGAGGGT-AAAATGTAATTTTAGGAAAACTCGA
1 GGTCAAAATGTAATTTTGGAAAAGTTTAG-GGGTCAAAATGTGATTTTTGGAAAGTTTAA
* * * * *
19327 GGTTAAAATGCAATTTTAGATAAA-TTT-GGAGTCAAAACGTGA-TTTTGGAAAAGTTTAAA
1 GGTCAAAATGTAATTTTGGA-AAAGTTTAGGGGTCAAAATGTGATTTTTGG-AAAGTTT-AA
* *
19386 GGTCAAAATGTAATTTGGGAAAAGTTTAGGGGTTAAAATGTGATTTTTGGAAAGTTT-A
1 GGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTCAAAATGTGATTTTTGGAAAGTTTAA
* * * *
19444 GGCATTAAAATGTAATTTTGGAAAAATTTAGGGGTCAAAATGT-AATTTTGGAAAAGTTTGAG
1 GG--TCAAAATGTAATTTTGGAAAAGTTTAGGGGTCAAAATGTGATTTTTGG-AAAGTTT-AA
* * * * * * *
19506 GGTTAAAATGTGATTTTGGAAAAGTTTAAGGGTTAAAATATGATTTTTAGAAAGTTTAG
1 GGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTCAAAATGTGATTTTTGGAAAGTTTAA
* * *
19565 GGTTC-AAATGTGATTTTTGATAAA-TTTAAGGGTCAAAATGTGATTTTT
1 GG-TCAAAATGTAATTTTGGA-AAAGTTTAGGGGTCAAAATGTGATTTTT
19613 TACATAGCTC
Statistics
Matches: 236, Mismatches: 35, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
57 8 0.03
58 18 0.08
59 87 0.37
60 109 0.46
61 12 0.05
62 2 0.01
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.36
Consensus pattern (59 bp):
GGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTCAAAATGTGATTTTTGGAAAGTTTAA
Found at i:19480 original size:90 final size:91
Alignment explanation
Indices: 19279--19612 Score: 291
Period size: 90 Copynumber: 3.7 Consensus size: 91
19269 GTCAAAATGA
* * * * *
19279 AATTTTGGAAAAGTTTAGAGGGT-AAAATGTAATTTTAGGAAAA--CTCGAGGTTAAAATG-CAA
1 AATTTTGGAAAAGTTTAG-GGGTCAAAATGTAATTTT-GGAAAAGTTTAGGGGTTAAAATGTGAT
* * **
19340 TTTTAGATAAA-TTT--GGAGTCAAAACGT
64 TTTTGGA-AAAGTTTAAGGA-TTAAAATAT
* ** *
19367 GATTTTGGAAAAGTTTAAAGGTCAAAATGTAATTTGGGAAAAGTTTAGGGGTTAAAATGTGATTT
1 AATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTT
*
19432 TTGG-AAAGTTT-AGGCATTAAAATGT
66 TTGGAAAAGTTTAAGG-ATTAAAATAT
*
19457 AATTTTGGAAAAATTTAGGGGTCAAAATGTAATTTTGGAAAAGTTT-GAGGGTTAAAATGTGA-T
1 AATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTAG-GGGTTAAAATGTGATT
*
19520 TTTGGAAAAGTTTAAGGGTTAAAATAT
65 TTTGGAAAAGTTTAAGGATTAAAATAT
* * * * * * *
19547 GATTTT-TAGAAAGTTTAGGGTTC-AAATGTGATTTTTGATAAA-TTTAAGGGTCAAAATGTGAT
1 AATTTTGGA-AAAGTTTAGGGGTCAAAATGTAATTTTGGA-AAAGTTTAGGGGTTAAAATGTGAT
19609 TTTT
64 TTTT
19613 TACATAGCTC
Statistics
Matches: 205, Mismatches: 27, Indels: 26
0.79 0.10 0.10
Matches are distributed among these distances:
87 9 0.04
88 31 0.15
89 52 0.25
90 109 0.53
91 4 0.02
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.36
Consensus pattern (91 bp):
AATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTT
TTGGAAAAGTTTAAGGATTAAAATAT
Found at i:19612 original size:30 final size:29
Alignment explanation
Indices: 19267--19611 Score: 245
Period size: 30 Copynumber: 11.6 Consensus size: 29
19257 GGGGAATATG
**
19267 GGGTCAAAATGAAATTTTGGAAAAGTTTAGA
1 GGGTCAAAATGTGATTTTGGAAAA-TTTA-A
* * **
19298 GGGT-AAAATGTAATTTTAGGAAAACTCGA
1 GGGTCAAAATGTGATTTT-GGAAAATTTAA
* ** *
19327 -GGTTAAAATGCAATTTTAGATAAATTT--
1 GGGTCAAAATGTGATTTTGGA-AAATTTAA
*
19354 GGAGTCAAAACGTGATTTTGGAAAAGTTTAA
1 GG-GTCAAAATGTGATTTTGGAAAA-TTTAA
* * * *
19385 AGGTCAAAATGTAATTTGGGAAAAGTTTAG
1 GGGTCAAAATGTGATTTTGGAAAA-TTTAA
* *
19415 GGGTTAAAATGTGATTTTTGGAAAGTTT-A
1 GGGTCAAAATGTGA-TTTTGGAAAATTTAA
* * * *
19444 GGCATTAAAATGTAATTTTGGAAAAATTTAG
1 GG-GTCAAAATGTGATTTTGG-AAAATTTAA
* *
19475 GGGTCAAAATGTAATTTTGGAAAAGTTTGA
1 GGGTCAAAATGTGATTTTGGAAAA-TTTAA
*
19505 GGGTTAAAATGTGATTTTGGAAAAGTTTAA
1 GGGTCAAAATGTGATTTTGGAAAA-TTTAA
* * * *
19535 GGGTTAAAATATGATTTTTAGAAAGTTT-A
1 GGGTCAAAATGTGA-TTTTGGAAAATTTAA
*
19564 GGGTTC-AAATGTGATTTTTGATAAATTTAA
1 GGG-TCAAAATGTGATTTTGGA-AAATTTAA
19594 GGGTCAAAATGTGATTTT
1 GGGTCAAAATGTGATTTT
19612 TTACATAGCT
Statistics
Matches: 254, Mismatches: 42, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
28 15 0.06
29 64 0.25
30 146 0.57
31 29 0.11
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.35
Consensus pattern (29 bp):
GGGTCAAAATGTGATTTTGGAAAATTTAA
Found at i:20514 original size:3 final size:3
Alignment explanation
Indices: 20506--20544 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
20496 AATCTCTCTT
20506 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
20545 ATTGTTTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:21236 original size:7 final size:6
Alignment explanation
Indices: 21211--21251 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
21201 CATTATTTAT
* *
21211 TTTAAA TTTAAA TTTAAA TTTAAA -ATAAA TTTAAA CTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
21252 ATAAATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:21239 original size:11 final size:12
Alignment explanation
Indices: 21213--21245 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
21203 TTATTTATTT
*
21213 TAAATTTAAATT
1 TAAATTTAAATA
21225 TAAATTTAAA-A
1 TAAATTTAAATA
21236 TAAATTTAAA
1 TAAATTTAAA
21246 CTTAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:21239 original size:17 final size:17
Alignment explanation
Indices: 21219--21259 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
21209 ATTTTAAATT
*
21219 TAAATTTAAATTTAAAA
1 TAAATTTAAACTTAAAA
21236 TAAATTTAAACTTAAAA
1 TAAATTTAAACTTAAAA
21253 TAAATTT
1 TAAATTT
21260 TAAAATGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTTAAACTTAAAA
Found at i:22411 original size:14 final size:14
Alignment explanation
Indices: 22388--22419 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
22378 AAAAGAAAAT
*
22388 AAAAATAAAAATTA
1 AAAAACAAAAATTA
22402 AAAAACAAAAATTA
1 AAAAACAAAAATTA
22416 AAAA
1 AAAA
22420 TCGTATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAACAAAAATTA
Found at i:22794 original size:13 final size:13
Alignment explanation
Indices: 22776--22800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22766 TAAATGAGAT
22776 AAAAATAAATAAC
1 AAAAATAAATAAC
22789 AAAAATAAATAA
1 AAAAATAAATAA
22801 ATAGGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAATAAATAAC
Found at i:31814 original size:27 final size:26
Alignment explanation
Indices: 31784--31834 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
31774 TTTATTTTCT
* *
31784 AATTTTTAATTTTTTATATTTTTATTA
1 AATTTTAAATTTTATAT-TTTTTATTA
31811 AATTTTAAATTTTATATTTTTTAT
1 AATTTTAAATTTTATATTTTTTAT
31835 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
AATTTTAAATTTTATATTTTTTATTA
Found at i:32528 original size:63 final size:63
Alignment explanation
Indices: 32455--32578 Score: 239
Period size: 63 Copynumber: 2.0 Consensus size: 63
32445 TTGGGGGTTA
*
32455 CCTCCACTGATTCTCTGGTCGATGTATGTTGAGATTGGTTACAAGAAACAACACATGAACACC
1 CCTCCACTGATTCTCCGGTCGATGTATGTTGAGATTGGTTACAAGAAACAACACATGAACACC
32518 CCTCCACTGATTCTCCGGTCGATGTATGTTGAGATTGGTTACAAGAAACAACACATGAACA
1 CCTCCACTGATTCTCCGGTCGATGTATGTTGAGATTGGTTACAAGAAACAACACATGAACA
32579 ACTTTGATGG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (63 bp):
CCTCCACTGATTCTCCGGTCGATGTATGTTGAGATTGGTTACAAGAAACAACACATGAACACC
Found at i:35399 original size:15 final size:14
Alignment explanation
Indices: 35379--35430 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
35369 ACAAAACGAT
35379 AACGTAAGTAATTAA
1 AACGTAA-TAATTAA
* *
35394 AACGTAATATTTTA
1 AACGTAATAATTAA
*
35408 AACATAAATAATTAA
1 AACGT-AATAATTAA
*
35423 AATGTAAT
1 AACGTAAT
35431 CTAAAACAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.33
Consensus pattern (14 bp):
AACGTAATAATTAA
Found at i:51030 original size:36 final size:36
Alignment explanation
Indices: 50981--51116 Score: 202
Period size: 36 Copynumber: 3.8 Consensus size: 36
50971 TATTCATAAT
* *
50981 ATTACACTTTAACCGAGACGTAAGCAATCACATAGC
1 ATTACACTCTAACCGAGACATAAGCAATCACATAGC
* *
51017 ATTACACTCTAACCGAGACATAAACAATTACATAGC
1 ATTACACTCTAACCGAGACATAAGCAATCACATAGC
* *
51053 ATTACGCTCTAACCGAGACATAA-AAATCACATAGC
1 ATTACACTCTAACCGAGACATAAGCAATCACATAGC
*
51088 ATTACGCTCTAACCGAGACATAAGCAATC
1 ATTACACTCTAACCGAGACATAAGCAATC
51117 CATCGAAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
35 33 0.36
36 58 0.64
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (36 bp):
ATTACACTCTAACCGAGACATAAGCAATCACATAGC
Found at i:51098 original size:71 final size:72
Alignment explanation
Indices: 50981--51115 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 72
50971 TATTCATAAT
* * *
50981 ATTACACTTTAACCGAGACGTAAGCAATCACATAGCATTACACTCTAACCGAGACATAAACAATT
1 ATTACACTCTAACCGAGACATAAGAAATCACATAGCATTACACTCTAACCGAGACATAAACAATT
51046 ACATAGC
66 ACATAGC
* * *
51053 ATTACGCTCTAACCGAGACATAA-AAATCACATAGCATTACGCTCTAACCGAGACATAAGCAAT
1 ATTACACTCTAACCGAGACATAAGAAATCACATAGCATTACACTCTAACCGAGACATAAACAAT
51116 CCATCGAAGT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
71 37 0.65
72 20 0.35
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.21
Consensus pattern (72 bp):
ATTACACTCTAACCGAGACATAAGAAATCACATAGCATTACACTCTAACCGAGACATAAACAATT
ACATAGC
Found at i:52414 original size:17 final size:17
Alignment explanation
Indices: 52392--52424 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
52382 TTTATTTGTT
52392 TTTAAACTTAAATTACC
1 TTTAAACTTAAATTACC
52409 TTTAAACTTAAATTAC
1 TTTAAACTTAAATTAC
52425 ATTTTTACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAACTTAAATTACC
Found at i:55053 original size:22 final size:23
Alignment explanation
Indices: 55023--55065 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
55013 TCACAAGTCC
**
55023 AAACTACAACAATTAACCAAAAG
1 AAACTACAACAAACAACCAAAAG
55046 AAAC-ACAACAAACAACCAAA
1 AAACTACAACAAACAACCAAA
55066 CCCTAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.65, C:0.26, G:0.02, T:0.07
Consensus pattern (23 bp):
AAACTACAACAAACAACCAAAAG
Found at i:60071 original size:3 final size:3
Alignment explanation
Indices: 60065--60213 Score: 289
Period size: 3 Copynumber: 49.7 Consensus size: 3
60055 ATTATTATTA
*
60065 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTT TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
60113 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
60161 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
60209 TTG TT
1 TTG TT
60214 ATTATTATTA
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
3 144 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:60218 original size:3 final size:3
Alignment explanation
Indices: 60212--60240 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
60202 GTTGTTGTTG
60212 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
60241 CTTTTCCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:61608 original size:89 final size:87
Alignment explanation
Indices: 61515--61837 Score: 262
Period size: 89 Copynumber: 3.7 Consensus size: 87
61505 GAGAATTTAG
* *
61515 GGTTAAAATATAAATTTGGAAAAGTTTG-GTGGTAAAAATGTAATTTTGGAAAAGTTTAGGGGTC
1 GGTTAAAATATAATTTTGGAAAAGTTTGAG-GGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTC
61579 AAAATGTGATTTTGAGAAAGTTCAA
65 AAAATGTGATTTTG-GAAAGTT-AA
* * ** * * *
61604 GGTT-AATTGTGGTTTTGGGAACA-TTTGAGGGTCAAAATGTAATTTAAGG-AAAGTTTAGGGAT
1 GGTTAAAATATAATTTT-GGAAAAGTTTGAGGGTCAAAATGTAATTT-TGGAAAAGTTTAGGGGT
* * * *
61666 CGAAATATGATTTTGGGAAGTTTGAG
64 CAAAATGTGATTTTGGAAAG-TT-AA
* * * * * *
61692 GGTCAAAA-ATTAATTTTAGAAAAGTTTGAGGGTTAAAATGTAACTTTGAAAAAGTTTAGGGGTT
1 GGTTAAAATA-TAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTC
** * *
61756 AAAATGAAATTTTGGAAAAATTTA
65 AAAATGTGATTTTGG-AAAGTTAA
* * * *
61780 GTATTTAAATACAATTTTGGGAAAGTTT-AGGGGTCAAAATGTAATTTTGGAAAAGTTT
1 G-GTTAAAATATAATTTTGGAAAAGTTTGA-GGGTCAAAATGTAATTTTGGAAAAGTTT
61838 GAAGATTAAA
Statistics
Matches: 178, Mismatches: 44, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
87 4 0.02
88 64 0.36
89 107 0.60
90 3 0.02
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (87 bp):
GGTTAAAATATAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTCA
AAATGTGATTTTGGAAAGTTAA
Found at i:61760 original size:59 final size:60
Alignment explanation
Indices: 61683--61849 Score: 178
Period size: 59 Copynumber: 2.8 Consensus size: 60
61673 TGATTTTGGG
* * **
61683 AAGTTT-GAGGGTCAAAAAT-TAATTTTAGAAAAGTTTGAGGGTTAAAATGTAACTTTGAAA
1 AAGTTTAG-GGGTC-AAAATGTAATTTTGGAAAAGTTTGAGGATTAAAATACAACTTTGAAA
* * * * * * **
61743 AAGTTTAGGGGTTAAAATGAAATTTTGGAAAAATTT-AGTATTTAAATACAATTTTGGGA
1 AAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTGAGGATTAAAATACAACTTTGAAA
*
61802 AAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTGAAGATTAAAAT
1 AAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTGAGGATTAAAAT
61850 TGAATTTTTG
Statistics
Matches: 86, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
59 53 0.62
60 32 0.37
61 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (60 bp):
AAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTGAGGATTAAAATACAACTTTGAAA
Found at i:61849 original size:30 final size:29
Alignment explanation
Indices: 61510--61868 Score: 221
Period size: 30 Copynumber: 12.1 Consensus size: 29
61500 TTTTAGAGAA
* *
61510 TTTAGGGTTAAAATATAAATTTGGAAAAG
1 TTTAGGGTTAAAATGTAATTTTGGAAAAG
* *
61539 TTTGGTGGTAAAAATGTAATTTTGGAAAAG
1 TTTAG-GGTTAAAATGTAATTTTGGAAAAG
* *
61569 TTTAGGGGTCAAAATGTGATTTT-GAGAAAG
1 TTTA-GGGTTAAAATGTAATTTTGGA-AAAG
* * * ** *
61599 TTCAAGGTT-AATTGTGGTTTTGGGAACA-
1 TTTAGGGTTAAAATGTAATTTT-GGAAAAG
* *
61627 TTTGAGGGTCAAAATGTAATTTAAGG-AAAG
1 TTT-AGGGTTAAAATGTAATTT-TGGAAAAG
** * * *
61657 TTTAGGGATCGAAATATGATTTTGG-GAAG
1 TTTAGGG-TTAAAATGTAATTTTGGAAAAG
* *
61686 TTTGAGGGTCAAAAAT-TAATTTTAGAAAAG
1 TTT-AGGGT-TAAAATGTAATTTTGGAAAAG
* *
61716 TTTGAGGGTTAAAATGTAACTTTGAAAAAG
1 TTT-AGGGTTAAAATGTAATTTTGGAAAAG
* *
61746 TTTAGGGGTTAAAATGAAATTTTGGAAAAA
1 TTTA-GGGTTAAAATGTAATTTTGGAAAAG
** * ** *
61776 TTTAGTATTTAAATACAATTTTGGGAAAG
1 TTTAGGGTTAAAATGTAATTTTGGAAAAG
*
61805 TTTAGGGGTCAAAATGTAATTTTGGAAAAG
1 TTTA-GGGTTAAAATGTAATTTTGGAAAAG
* *
61835 TTTGAAGATTAAAAT-TGAATTTTTGG-AAAG
1 TTT-AGGGTTAAAATGT-AA-TTTTGGAAAAG
61865 TTTA
1 TTTA
61869 AGGATCTTTT
Statistics
Matches: 255, Mismatches: 56, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
28 12 0.05
29 67 0.26
30 168 0.66
31 8 0.03
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.36
Consensus pattern (29 bp):
TTTAGGGTTAAAATGTAATTTTGGAAAAG
Found at i:62127 original size:36 final size:36
Alignment explanation
Indices: 62087--62175 Score: 160
Period size: 36 Copynumber: 2.5 Consensus size: 36
62077 GCCATAAACT
*
62087 AAAATACGTCGTTTTGGGGTGTTTAAGTCAGTCCCA
1 AAAATACGTCGTTTTGGGGTGTTTAAGTCAATCCCA
62123 AAAATACGTCGTTTTGGGGTGTTTAAGTCAATCCCA
1 AAAATACGTCGTTTTGGGGTGTTTAAGTCAATCCCA
*
62159 AAACTACGTCGTTTTGG
1 AAAATACGTCGTTTTGG
62176 AGTTTAATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (36 bp):
AAAATACGTCGTTTTGGGGTGTTTAAGTCAATCCCA
Found at i:62330 original size:18 final size:18
Alignment explanation
Indices: 62307--62361 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
62297 GACTGCTGGT
* *
62307 CACTCGCCGTTCGTTGAC
1 CACTCGCCGTCCGTCGAC
*
62325 CACTCGTCGTCCGTCGAC
1 CACTCGCCGTCCGTCGAC
*
62343 CAC-CGCCGTCTGTCG-C
1 CACTCGCCGTCCGTCGAC
62359 CAC
1 CAC
62362 CCATAGCGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
16 4 0.12
17 10 0.31
18 18 0.56
ACGTcount: A:0.11, C:0.45, G:0.22, T:0.22
Consensus pattern (18 bp):
CACTCGCCGTCCGTCGAC
Found at i:62517 original size:24 final size:24
Alignment explanation
Indices: 62472--62517 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
62462 TTTTTGAAAC
*
62472 CCCTTTTATTTTTTAGTGTTTTAA
1 CCCTTTTATTTTTTAGTATTTTAA
*
62496 CCCTTTTGTTTTGTTA-TATTTT
1 CCCTTTTATTTT-TTAGTATTTT
62518 TTTTTGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.13, C:0.13, G:0.09, T:0.65
Consensus pattern (24 bp):
CCCTTTTATTTTTTAGTATTTTAA
Found at i:62604 original size:16 final size:17
Alignment explanation
Indices: 62583--62617 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
62573 TTCAAATGGA
62583 TATGTATATATAT-ATG
1 TATGTATATATATAATG
62599 TATGTATATATATAATG
1 TATGTATATATATAATG
62616 TA
1 TA
62618 AAAATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (17 bp):
TATGTATATATATAATG
Found at i:63718 original size:48 final size:48
Alignment explanation
Indices: 63641--63759 Score: 193
Period size: 48 Copynumber: 2.5 Consensus size: 48
63631 TGGTATACTA
*
63641 CTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTT
1 CTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTT
* *
63689 CTCTATATCTCATCAGGAAGATGAGCTCTTTATTACTTTGACCCACTT
1 CTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTT
* *
63737 TTTTGTATCTCATCAGGAAGATG
1 CTCTGTATCTCATCAGGAAGATG
63760 GGGTTTGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (48 bp):
CTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTT
Found at i:63819 original size:171 final size:172
Alignment explanation
Indices: 63511--63837 Score: 440
Period size: 171 Copynumber: 1.9 Consensus size: 172
63501 ATCTCTTGGT
* * * * *
63511 CCACTTCTCTGTATCTCATCAGAAAGATAATCACTTTATTGCTTCGACCCAGTTCTCTATATTTC
1 CCACTTCTCTATATCTCATCAGAAAGATAAGCACTTTATTACTTCGACCCACTTCTCTATATCTC
* * *
63576 ATCAGGCAGATAGAGGTTTCAAGTTTCACTCGCATTGAACTTCGCTTCATTGATTTGGTATACTA
66 ATCAGGAAGATAGAGGTTTCAAGTTTCACTCACACTGAACTTCGCTTCATTGATTTGGTATACTA
63641 CTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGAC
131 CTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGAC
* * * * * * *
63683 CCACTTCTCTATATCTCATCAGGAAGATGAGCTCTTTATTACTTTGACCCACTTTTTTGTATCTC
1 CCACTTCTCTATATCTCATCAGAAAGATAAGCACTTTATTACTTCGACCCACTTCTCTATATCTC
* * * * * *
63748 ATCAGGAAGAT-GGGGTTTGAAGTTTCACTCACACTGAGCTTCGCTTCATTGATTTGGTCTATTT
66 ATCAGGAAGATAGAGGTTTCAAGTTTCACTCACACTGAACTTCGCTTCATTGATTTGGTATACTA
* *
63812 TTCTGTATCTTATCAGGAAGATGACC
131 CTCTGTATCTCATCAGGAAGATGACC
63838 ACCTCATTGT
Statistics
Matches: 132, Mismatches: 23, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
171 69 0.52
172 63 0.48
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (172 bp):
CCACTTCTCTATATCTCATCAGAAAGATAAGCACTTTATTACTTCGACCCACTTCTCTATATCTC
ATCAGGAAGATAGAGGTTTCAAGTTTCACTCACACTGAACTTCGCTTCATTGATTTGGTATACTA
CTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGAC
Found at i:63957 original size:85 final size:85
Alignment explanation
Indices: 63802--63966 Score: 197
Period size: 85 Copynumber: 1.9 Consensus size: 85
63792 TTCATTGATT
* * * ** * *
63802 TGGTCTATTTTTCTGTATCTTATCAGGAAGATGACCACCTCATTGTTTTAATCCACTTTTGTATA
1 TGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTACTTTAATCCACTTCTCTATA
63867 CCTCATCAAAAAGATGGATA
66 CCTCATCAAAAAGATGGATA
* * * *
63887 TGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGA-CCTACTTCTCTAT
1 TGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTACTTTAATCC-ACTTCTCTAT
* *
63951 ATCTCATCAAGAAGAT
65 ACCTCATCAAAAAGAT
63967 AGGGTTTGAA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
84 2 0.03
85 64 0.97
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (85 bp):
TGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTACTTTAATCCACTTCTCTATA
CCTCATCAAAAAGATGGATA
Found at i:64043 original size:208 final size:208
Alignment explanation
Indices: 63683--64322 Score: 756
Period size: 208 Copynumber: 3.1 Consensus size: 208
63673 TTGCTTTGAC
* * * * * *
63683 CCACTTCTCTATATCTCATCAGGAAGATGAGCTCTTTATTACTTTGACCCACTTTTTTGTATCTC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCTACTTCTCTATATCTC
* * * *
63748 ATCAGGAAGATGGGGTTTGAAGTTTCACTCACACTGAGCTTCGCTTCATTGATTTGGTCTATTTT
66 ATCAAGAAGATGGGGTTTGAAGTTTCACTCACACTGAGCTTCGCTTCATCGATTTGGTCTACTTC
* * *
63813 TCTGTATCTTATCAGGAAGATGACCACCTCATTGTTTTAATCCACTTTTGTATACCTCATCAA-A
131 TCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTAATCCACTTCTCTATACCTCAT-AAGA
* *
63877 AAGATGGATATGGT
195 AAGACGAATATGGT
*
63891 CTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCTACTTCTCTATATCTC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCTACTTCTCTATATCTC
* *
63956 ATCAAGAAGATAGGGTTTGAAATTTCACTCACACTGAGCTTCGCTTCATCGATTTGGTCTACTTC
66 ATCAAGAAGATGGGGTTTGAAGTTTCACTCACACTGAGCTTCGCTTCATCGATTTGGTCTACTTC
* *
64021 TCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTAATCCACTTCTCTATATCTCATAAGGA
131 TCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTAATCCACTTCTCTATACCTCATAAGAA
*
64086 AGACGAATTTGGT
196 AGACGAATATGGT
*
64099 CCACTTCTCTGTATCTCATCAGGAAGATGACCGC--T-TTA---T----TA---CTCTATATCTC
1 CCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCTACTTCTCTATATCTC
* * * *
64151 ATCAAGAAGATGGGGGCTCGAAGTTTCACTCTCATTGAGCTTCGCTTCATCGATTTGGTCTACTT
66 ATCAAGAAGAT-GGGGTTTGAAGTTTCACTCACACTGAGCTTCGCTTCATCGATTTGGTCTACTT
* * * * ** * * *
64216 CTCTGTATATCATAAAGAAGATGA-CAGCATCACTTGTTTTAATCTGCTTCACTGTATCTCATCA
130 CTCTGTATCTCATCAGGAAGATGACCA-CCTCA-TTGTTTTAATCCACTTCTCTATACCTCAT-A
* *
64280 AG-AAGAC-AGATTTGAT
192 AGAAAGACGA-ATATGGT
* *
64296 CCACTTCTTTGTATCTCATCAGAAAGA
1 CCACTTCTCTGTATCTCATCAGGAAGA
64323 CGATTGCTTT
Statistics
Matches: 386, Mismatches: 40, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
195 24 0.06
196 73 0.19
197 61 0.16
198 5 0.01
202 1 0.00
205 3 0.01
206 1 0.00
207 2 0.01
208 216 0.56
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (208 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCTACTTCTCTATATCTC
ATCAAGAAGATGGGGTTTGAAGTTTCACTCACACTGAGCTTCGCTTCATCGATTTGGTCTACTTC
TCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTAATCCACTTCTCTATACCTCATAAGAA
AGACGAATATGGT
Found at i:64526 original size:49 final size:49
Alignment explanation
Indices: 64473--65091 Score: 442
Period size: 49 Copynumber: 12.6 Consensus size: 49
64463 TCACCGTTAT
* * * * * *
64473 GGCCTCAACCTTTCCCTTCATATCTTCATGGTGTCAGATTCGTCGTTGC
1 GGCCTCAACCTTTCCCATCACATCTTCAAGGTATCGGGTTCGTCGTTGC
* * * *
64522 GGCCTCAATCC-TTCCCATCACATCTTCTAAAGTATCGAGTTCGTCATTAC
1 GGCCTCAA-CCTTTCCCATCACATCTTC-AAGGTATCGGGTTCGTCGTTGC
* ** *** * * * *
64572 GACCTCAACCTTTCCTTTC-CTAT-TTTGTGGTA-CTGAGTTCGCCATTAC
1 GGCCTCAACCTTTCCCATCAC-ATCTTCAAGGTATC-GGGTTCGTCGTTGC
* * * * *
64620 GACCTCAACCTTTCCCATCACATCTTCTAAGGTACCGAGTTCATCGTTAC
1 GGCCTCAACCTTTCCCATCACATCTTC-AAGGTATCGGGTTCGTCGTTGC
* * * *
64670 GGCCTCAACCTTTCCCATCACATCTTTAAGATATCGGGTTCATCGTTCC
1 GGCCTCAACCTTTCCCATCACATCTTCAAGGTATCGGGTTCGTCGTTGC
* * * * * *
64719 GGCCTCAACCTTTCCCTTCAAATATTCATGGTA-CTGGGTTCGCCGTTAC
1 GGCCTCAACCTTTCCCATCACATCTTCAAGGTATC-GGGTTCGTCGTTGC
* * * * * *
64768 GGACTCAACCTTTCCCATCACATATTCTAAAGTACCAGGTTCGTCTTTGC
1 GGCCTCAACCTTTCCCATCACATCTTC-AAGGTATCGGGTTCGTCGTTGC
* ** * * * *
64818 AGCCTCAACCTTTCCTTTCATATATTTATA-GTATTGGGTTCGTCGTTGC
1 GGCCTCAACCTTTCCCATCACATCTTCA-AGGTATCGGGTTCGTCGTTGC
* * * ** *
64867 GGGCTCAACCTTTTCCATCACATCTTTTAAGGTATCGGGTTCACCGTTGT
1 GGCCTCAACCTTTCCCATCACATC-TTCAAGGTATCGGGTTCGTCGTTGC
* * * * *
64917 GGTCTTAACCTTTCCCATCAAATCTTTTAAGGTATCGGGTTTGTCGTTGC
1 GGCCTCAACCTTTCCCATCACATC-TTCAAGGTATCGGGTTCGTCGTTGC
* * * * * * **
64967 GGCCTCAACCTTTCCCTTCAAATATTCACGGTACCAGGTTCACCGTTGC
1 GGCCTCAACCTTTCCCATCACATCTTCAAGGTATCGGGTTCGTCGTTGC
* * * * *
65016 GGCCTTAACCTTTCCCTTCAAATATTCATGGTATCGGGTTCGTCGTTGC
1 GGCCTCAACCTTTCCCATCACATCTTCAAGGTATCGGGTTCGTCGTTGC
*
65065 GGCCTCAACCTTTCCTATCACA-CTTCA
1 GGCCTCAACCTTTCCCATCACATCTTCA
65092 TAATGCTGAA
Statistics
Matches: 454, Mismatches: 101, Indels: 31
0.77 0.17 0.05
Matches are distributed among these distances:
47 1 0.00
48 40 0.09
49 223 0.49
50 188 0.41
51 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.35
Consensus pattern (49 bp):
GGCCTCAACCTTTCCCATCACATCTTCAAGGTATCGGGTTCGTCGTTGC
Found at i:64760 original size:148 final size:147
Alignment explanation
Indices: 64466--65090 Score: 503
Period size: 148 Copynumber: 4.2 Consensus size: 147
64456 ACTGGATTCA
* * * * * **
64466 CCGTTATGGCCTCAACCTTTCCCTTCATATCTTC-ATGGTGTCAGATTCGTCGTTGCGGCCTCAA
1 CCGTTACGACCTCAACCTTTCCCATCACATCTTCTAAGGTACCAG-TTCGTCGTTGCGGCCTCAA
* * * * * * * **
64530 TCC-TTCCCATCACATCTTCTAA-AGTATCGAGTTCGTCATTACGACCTCAACCTTTCCTTTCCT
65 -CCTTTCCCATCACATATT-TAAGA-TATCGGGTTCATCGTTGCGGCCTCAACCTTTCCCTTCAA
** *
64593 AT-TTTGTGGTA-CTGAGTTCG
127 ATATTCATGGTATC-GGGTTCG
* * *
64613 CCATTACGACCTCAACCTTTCCCATCACATCTTCTAAGGTACCGAGTTCATCGTTACGGCCTCAA
1 CCGTTACGACCTCAACCTTTCCCATCACATCTTCTAAGGTACC-AGTTCGTCGTTGCGGCCTCAA
* *
64678 CCTTTCCCATCACATCTTTAAGATATCGGGTTCATCGTTCCGGCCTCAACCTTTCCCTTCAAATA
65 CCTTTCCCATCACATATTTAAGATATCGGGTTCATCGTTGCGGCCTCAACCTTTCCCTTCAAATA
64743 TTCATGGTA-CTGGGTTCG
130 TTCATGGTATC-GGGTTCG
* * * *
64761 CCGTTACGGA-CTCAACCTTTCCCATCACATATTCTAAAGTACCAGGTTCGTCTTTGCAGCCTCA
1 CCGTTAC-GACCTCAACCTTTCCCATCACATCTTCTAAGGTACCA-GTTCGTCGTTGCGGCCTCA
** * * * * * * *
64825 ACCTTTCCTTTCATATATTTATAG-TATTGGGTTCGTCGTTGCGGGCTCAACCTTTTCCATCACA
64 ACCTTTCCCATCACATATTTA-AGATATCGGGTTCATCGTTGCGGCCTCAACCTTTCCCTTCAAA
* * * *
64889 TCTTTTAAGGTATCGGGTTCA
128 T-ATTCATGGTATCGGGTTCG
** ** * * * ** *
64910 CCGTTGTGGTCTTAACCTTTCCCATCAAATCTTTTAAGGTATCGGGTTTGTCGTTGCGGCCTCAA
1 CCGTTACGACCTCAACCTTTCCCATCACATCTTCTAAGGTA-CCAGTTCGTCGTTGCGGCCTCAA
* * * * * * * * *
64975 CCTTTCCCTTCAAATATTCACGGTACCAGGTTCACCGTTGCGGCCTTAACCTTTCCCTTCAAATA
65 CCTTTCCCATCACATATTTAAGATATCGGGTTCATCGTTGCGGCCTCAACCTTTCCCTTCAAATA
65040 TTCATGGTATCGGGTTCG
130 TTCATGGTATCGGGTTCG
* * * *
65058 TCGTTGCGGCCTCAACCTTTCCTATCACA-CTTC
1 CCGTTACGACCTCAACCTTTCCCATCACATCTTC
65091 ATAATGCTGA
Statistics
Matches: 384, Mismatches: 81, Indels: 26
0.78 0.16 0.05
Matches are distributed among these distances:
147 71 0.18
148 196 0.51
149 115 0.30
150 2 0.01
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (147 bp):
CCGTTACGACCTCAACCTTTCCCATCACATCTTCTAAGGTACCAGTTCGTCGTTGCGGCCTCAAC
CTTTCCCATCACATATTTAAGATATCGGGTTCATCGTTGCGGCCTCAACCTTTCCCTTCAAATAT
TCATGGTATCGGGTTCG
Found at i:64832 original size:99 final size:98
Alignment explanation
Indices: 64622--65086 Score: 432
Period size: 99 Copynumber: 4.7 Consensus size: 98
64612 GCCATTACGA
* * * * * * * *
64622 CCTCAACCTTTCCCATCACATCTTCTAAGGTACCGAGTTCATCGTTACGGCCTCAACCTTTCCCA
1 CCTCAACCTTTCCCTTCAAATATTC-ATGGTA-TGGGTTCGTCGTTGCGGCCTCAACCTTTCCCA
* * * * *
64687 TCACATCTT-T-AAGATATCGGGTTCATCGTTCCGG
64 TCACATATTCTAAAG-TACCAGGTTCACCGTTGCGG
* * *
64721 CCTCAACCTTTCCCTTCAAATATTCATGGTACTGGGTTCGCCGTTACGGACTCAACCTTTCCCAT
1 CCTCAACCTTTCCCTTCAAATATTCATGGTA-TGGGTTCGTCGTTGCGGCCTCAACCTTTCCCAT
** * *
64786 CACATATTCTAAAGTACCAGGTTCGTCTTTGCAG
65 CACATATTCTAAAGTACCAGGTTCACCGTTGCGG
* * * * * *
64820 CCTCAACCTTTCCTTTCATATATTTATAGTATTGGGTTCGTCGTTGCGGGCTCAACCTTTTCCAT
1 CCTCAACCTTTCCCTTCAAATATTCATGGTA-TGGGTTCGTCGTTGCGGCCTCAACCTTTCCCAT
* * * * * *
64885 CACATCTTTTAAGGTATCGGGTTCACCGTTGTGG
65 CACATATTCTAAAGTACCAGGTTCACCGTTGCGG
* * * * * * * *
64919 TCTTAACCTTTCCCATCAAATCTTTTAAGGTATCGGGTTTGTCGTTGCGGCCTCAACCTTTCCCT
1 CCTCAACCTTTCCCTTCAAAT-ATTCATGGTAT-GGGTTCGTCGTTGCGGCCTCAACCTTTCCCA
* **
64984 TCAAATATTC-ACGGTACCAGGTTCACCGTTGCGG
64 TCACATATTCTAAAGTACCAGGTTCACCGTTGCGG
* *
65018 CCTTAACCTTTCCCTTCAAATATTCATGGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTCCTAT
1 CCTCAACCTTTCCCTTCAAATATTCATGGTAT-GGGTTCGTCGTTGCGGCCTCAACCTTTCCCAT
65083 CACA
65 CACA
65087 CTTCATAATG
Statistics
Matches: 299, Mismatches: 63, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
98 82 0.27
99 173 0.58
100 44 0.15
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.34
Consensus pattern (98 bp):
CCTCAACCTTTCCCTTCAAATATTCATGGTATGGGTTCGTCGTTGCGGCCTCAACCTTTCCCATC
ACATATTCTAAAGTACCAGGTTCACCGTTGCGG
Found at i:64929 original size:198 final size:197
Alignment explanation
Indices: 64622--65086 Score: 515
Period size: 198 Copynumber: 2.4 Consensus size: 197
64612 GCCATTACGA
* * * * * * * *
64622 CCTCAACCTTTCCCATCACATCTTC-TAAGGTACCGAGTTCATCGTTACGGCCTCAACCTTTCCC
1 CCTCAACCTTTCCCTTCAAATATTCAT-A-GTATCGGGTTCGTCGTTGCGGCCTCAACCTTTTCC
* * *
64686 ATCACATCTTTAAGATATCGGGTTCATCGTTCCGGCCTCAACCTTTCCCTTCAAAT-ATTCATGG
64 ATCACATCTTTAAGATATCGGGTTCACCGTTCCGGCCTCAACCTTTCCCATCAAATCATTCAAGG
* ** *
64750 TA-CTGGGTTCGCCGTTACGGACTCAACCTTTCCCATCACATATTCTAAAGTACCAGGTTCGTCT
129 TATC-GGGTTCGCCGTTACGGACTCAACCTTTCCCATCAAATATTC-AAAGTACCAGGTTCACCG
64814 TTGCAG
192 TTGCAG
* * * * *
64820 CCTCAACCTTTCCTTTCATATATTTATAGTATTGGGTTCGTCGTTGCGGGCTCAACCTTTTCCAT
1 CCTCAACCTTTCCCTTCAAATATTCATAGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTTCCAT
* ** * * * *
64885 CACATCTTTTAAGGTATCGGGTTCACCGTTGTGGTCTTAACCTTTCCCATCAAATCTTTTAAGGT
66 CACATC-TTTAAGATATCGGGTTCACCGTTCCGGCCTCAACCTTTCCCATCAAATCATTCAAGGT
* * * * * **
64950 ATCGGGTTTGTCGTTGCGGCCTCAACCTTTCCCTTCAAATATTCACGGTACCAGGTTCACCGTTG
130 ATCGGGTTCGCCGTTACGGACTCAACCTTTCCCATCAAATATTCAAAGTACCAGGTTCACCGTTG
*
65015 CGG
195 CAG
* *
65018 CCTTAACCTTTCCCTTCAAATATTCATGGTATCGGGTTCGTCGTTGCGGCCTCAACC-TTTCCTA
1 CCTCAACCTTTCCCTTCAAATATTCATAGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTTCC-A
65082 TCACA
65 TCACA
65087 CTTCATAATG
Statistics
Matches: 221, Mismatches: 41, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
197 41 0.19
198 136 0.62
199 43 0.19
200 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.34
Consensus pattern (197 bp):
CCTCAACCTTTCCCTTCAAATATTCATAGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTTCCAT
CACATCTTTAAGATATCGGGTTCACCGTTCCGGCCTCAACCTTTCCCATCAAATCATTCAAGGTA
TCGGGTTCGCCGTTACGGACTCAACCTTTCCCATCAAATATTCAAAGTACCAGGTTCACCGTTGC
AG
Found at i:66167 original size:33 final size:32
Alignment explanation
Indices: 66130--66202 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
66120 CGACCTCTCC
* *
66130 TTTTATTTTTCCCTTTT-TTTCCTTTTTTCTCTT
1 TTTTATTTTT-ACTTTTATTTCCTTCTTT-TCTT
* *
66163 TTTTATTTTTATTTTTATTTTCTTCTTTTCTT
1 TTTTATTTTTACTTTTATTTCCTTCTTTTCTT
66195 TTTTATTT
1 TTTTATTT
66203 ATTTTTCTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 16 0.46
33 19 0.54
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (32 bp):
TTTTATTTTTACTTTTATTTCCTTCTTTTCTT
Found at i:66183 original size:26 final size:24
Alignment explanation
Indices: 66153--66210 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 24
66143 TTTTTTTCCT
* *
66153 TTTTTCTCTTTTTTATTTTTATTTT
1 TTTTTCTCTTTTCT-TTTTTATTTA
66178 TATTTTCTTCTTTTCTTTTTTATTTA
1 T-TTTTC-TCTTTTCTTTTTTATTTA
66204 TTTTTCT
1 TTTTTCT
66211 TCATTGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 1 0.03
25 6 0.21
26 15 0.52
27 7 0.24
ACGTcount: A:0.09, C:0.10, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTTTCTCTTTTCTTTTTTATTTA
Found at i:66186 original size:24 final size:24
Alignment explanation
Indices: 66159--66212 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
66149 TCCTTTTTTC
*
66159 TCTT-TTTTATTTTTATTTTTATTT
1 TCTTCTTTTATTTTT-TATTTATTT
*
66183 TCTTCTTTTCTTTTTTATTTATTTT
1 TCTTCTTTTATTTTTTATTTA-TTT
66208 TCTTC
1 TCTTC
66213 ATTGAATCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (24 bp):
TCTTCTTTTATTTTTTATTTATTT
Done.