genome.fa.s12247.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012247.1 Kokia drynarioides strain JFW-HI SEQ_127248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110606

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351--833	29	17.0	29	75	12	373	34	30	2	32	1.70
351--738	139	2.8	139	77	9	348	35	29	2	32	1.70
350--806	168	2.7	169	89	3	699	35	29	2	32	1.71
357--738	59	6.8	53	79	13	357	35	29	2	32	1.71
525--738	109	2.0	110	86	8	303	34	28	2	34	1.72
634--832	30	6.8	28	78	10	143	34	30	2	33	1.69
2274--2316	17	2.6	16	89	10	68	62	0	0	37	0.95
3834--3858	5	5.0	5	100	0	50	0	20	0	80	0.72
5313--5485	49	3.5	49	87	0	193	28	27	19	24	1.98
5356--5501	49	3.0	49	87	0	193	31	27	17	23	1.97
18075--18099	13	1.9	13	100	0	50	36	0	0	64	0.94
19006--19048	21	2.0	21	82	8	52	23	2	4	69	1.18
23091--23133	4	11.0	4	80	14	54	79	0	20	0	0.74
23091--23151	25	2.4	25	86	5	79	73	0	26	0	0.83
23091--23169	7	12.0	7	68	12	51	69	0	30	0	0.89
23093--23176	13	6.5	13	74	6	73	71	0	28	0	0.86
23815--23864	16	3.2	16	71	21	52	60	6	0	34	1.21
25151--25233	43	1.9	43	85	4	114	30	13	10	45	1.77
29025--29090	4	16.2	4	76	14	64	0	31	0	68	0.90
29025--29090	17	3.5	18	80	15	80	0	31	0	68	0.90
32310--32370	14	4.5	13	76	8	59	73	3	1	21	1.06
34336--34369	18	1.9	17	94	5	59	52	14	5	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39000--39033	17	1.9	18	94	5	61	67	2	0	29	1.05
39636--39688	27	2.0	27	88	0	79	64	3	13	18	1.43
39859--39911	21	2.5	20	85	14	63	41	1	3	52	1.30
43545--43605	32	2.0	31	83	6	79	45	0	1	52	1.10
47603--47676	20	3.5	20	71	16	58	6	4	21	67	1.31
48253--48586	165	2.0	163	97	1	632	59	9	4	26	1.47
48545--48588	21	2.2	19	84	8	52	68	6	6	18	1.35
48596--48620	12	2.1	12	100	0	50	68	16	0	16	1.22
48603--48698	12	8.3	12	79	9	85	69	18	5	6	1.29
48614--48701	21	3.9	22	80	7	88	69	20	5	4	1.27
48582--48701	44	2.7	44	83	6	127	68	19	4	8	1.32
48643--48701	9	6.6	9	72	14	50	72	20	3	3	1.13
48596--48691	33	2.8	32	82	7	102	68	19	4	7	1.30
48615--48701	23	3.9	21	76	11	75	70	19	5	4	1.26
48625--48750	56	2.3	55	81	6	132	69	19	3	7	1.29
48707--48782	21	3.6	21	83	3	91	68	14	6	10	1.38
49976--50053	30	2.7	29	79	2	93	28	8	28	34	1.87
49976--50049	29	2.5	28	72	8	67	28	9	27	35	1.88
50037--50196	30	5.5	30	70	17	122	35	3	23	38	1.70
50177--50419	30	8.4	28	68	17	122	38	0	27	33	1.63
50036--50401	59	6.2	58	79	11	286	37	1	24	36	1.67
50183--50421	29	8.2	29	71	16	165	39	0	25	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50178--50433	58	4.4	58	82	11	285	39	0	26	33	1.62
50062--50405	116	2.9	113	80	10	354	37	1	25	35	1.67
57903--59048	87	13.1	87	87	3	1525	29	15	14	40	1.87
57886--59047	350	3.3	351	95	1	2033	29	15	14	40	1.87
60028--60092	24	2.8	22	72	25	53	49	1	1	47	1.20
60075--60116	13	2.9	14	86	13	59	45	0	0	54	0.99
66926--67035	58	1.9	58	84	3	150	31	0	19	48	1.55
67197--67241	23	2.0	23	86	0	63	35	20	13	31	1.91
75929--76057	5	25.8	5	73	12	61	47	17	3	31	1.65
75922--76013	15	6.1	15	73	20	77	44	17	3	34	1.65
75929--76011	30	2.8	30	92	3	132	44	15	3	36	1.64
75954--76045	40	2.3	40	83	9	116	50	17	3	29	1.62
75955--76057	25	4.3	25	67	20	76	49	17	2	30	1.61
85413--85480	33	2.1	33	86	10	97	39	0	57	2	1.14
103034--103065	1	32.0	1	100	0	64	0	0	0	100	0.00
103076--103104	1	29.0	1	100	0	58	0	0	0	100	0.00
107439--107972	264	2.0	264	98	0	1023	42	9	15	32	1.79
109441--109483	19	2.3	18	84	7	59	53	2	4	39	1.34

Tables:   1

The End!