Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012248.1 Kokia drynarioides strain JFW-HI SEQ_127249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1192
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30

Warning! 7 characters in sequence are not A, C, G, or T


Found at i:566 original size:45 final size:45

Alignment explanation


    Indices: 323--565  Score: 432
    Period size: 45  Copynumber: 5.4  Consensus size: 45

        313 CAAACTCAAC

                       **                                
        323 CTGATATCCTTCCCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG
          1 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG

                                                         
        368 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG
          1 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG

                                                         
        413 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG
          1 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG

                                    *                    
        458 CTGATATCCTTGGCTTGAGCATTGTGGTGGCTCGTCAAATTGAGG
          1 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG

                              *           *        *     
        503 CTGATATCCTTGGCTTGATCATTGCGGTGGGTCGTCAAACTGAGG
          1 CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG

                              
        548 CTGATATCCTTGGCTTGA
          1 CTGATATCCTTGGCTTGA

        566 TGAGCTATGC


Statistics
Matches: 191,  Mismatches: 7, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  45  191  1.00

ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32


Consensus pattern (45 bp):   
CTGATATCCTTGGCTTGAGCATTGCGGTGGCTCGTCAAATTGAGG
Done.