Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012254.1 Kokia drynarioides strain JFW-HI SEQ_127255, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4060
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.33

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3534 original size:16 final size:16

Alignment explanation


    Indices: 3513--3548  Score: 63
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       3503 AAATAATCCC

                   *        
       3513 AAAATTACAAGTCTCA
          1 AAAATTAAAAGTCTCA

                            
       3529 AAAATTAAAAGTCTCA
          1 AAAATTAAAAGTCTCA

                
       3545 AAAA
          1 AAAA

       3549 CACTTTATTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.58, C:0.14, G:0.06, T:0.22


Consensus pattern (16 bp):   
AAAATTAAAAGTCTCA

Done.