Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012260.1 Kokia drynarioides strain JFW-HI SEQ_127261, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3705
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:3433 original size:6 final size:6

Alignment explanation


    Indices: 3422--3462  Score: 73
    Period size: 6  Copynumber: 6.8  Consensus size: 6

       3412 GGCAACCAAA

                                         *                 
       3422 TTTTAT TTTTAT TTTTAT TTTTAT TCTTAT TTTTAT TTTTA
          1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA

       3463 GTTCTAGTTT


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80


Consensus pattern (6 bp):   
TTTTAT

Found at i:3445 original size:18 final size:18

Alignment explanation


    Indices: 3422--3467  Score: 74
    Period size: 18  Copynumber: 2.5  Consensus size: 18

       3412 GGCAACCAAA

                   *          
       3422 TTTTATTTTTATTTTTAT
          1 TTTTATTCTTATTTTTAT

                              
       3440 TTTTATTCTTATTTTTAT
          1 TTTTATTCTTATTTTTAT

                      
       3458 TTTTAGTTCT
          1 TTTTA-TTCT

       3468 AGTTTTTTTC


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  18   22  0.85
  19    4  0.15

ACGTcount: A:0.15, C:0.04, G:0.02, T:0.78


Consensus pattern (18 bp):   
TTTTATTCTTATTTTTAT

Found at i:3473 original size:18 final size:18

Alignment explanation


    Indices: 3422--3473  Score: 61
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       3412 GGCAACCAAA

                   *   *      
       3422 TTTTATTTTTATTTTTAT
          1 TTTTATTCTTAGTTTTAT

                       *      
       3440 TTTTATTCTTATTTTTAT
          1 TTTTATTCTTAGTTTTAT

                             
       3458 TTTTAGTTC-TAGTTTT
          1 TTTTA-TTCTTAGTTTT

       3474 TTTCTTGCAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   28  0.90
  19    3  0.10

ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77


Consensus pattern (18 bp):   
TTTTATTCTTAGTTTTAT
Done.