Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012262.1 Kokia drynarioides strain JFW-HI SEQ_127263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5115
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.37

Warning! 174 characters in sequence are not A, C, G, or T


Found at i:676 original size:22 final size:21

Alignment explanation


    Indices: 646--688  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        636 AAATAAAAAC

                *           *     
        646 ATTATAATAATTTGAAGATTTA
          1 ATTAGAATAATTT-AAAATTTA

                                 
        668 ATTAGAATAATTTAAAATTTA
          1 ATTAGAATAATTTAAAATTTA

        689 GATACTAATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    7  0.37
  22   12  0.63

ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44


Consensus pattern (21 bp):   
ATTAGAATAATTTAAAATTTA
Done.