Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012264.1 Kokia drynarioides strain JFW-HI SEQ_127265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37146
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Warning! 18 characters in sequence are not A, C, G, or T
Found at i:3442 original size:43 final size:43
Alignment explanation
Indices: 3381--3538 Score: 192
Period size: 43 Copynumber: 3.7 Consensus size: 43
3371 TTATGTGGAA
* *
3381 AAACGCCGCTATAGAACATGATCTTTAGCGGCGCCTTTCCAAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGACGCTTTTCCAAC
* * * *
3424 AAACGCCGCTATAGAACATGATCTTTAACGACACTTTTCAAAT
1 AAACGCCGCTATAGAACATGATCTTTAGCGACGCTTTTCCAAC
* * * *
3467 AAACGCCGTTATAGAACATGATCTTTAGCGATGTTTTTCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGACGCTTTTCCAAC
* *
3510 AAATGCCGCTATAAAACAT-ATTCTTTAGC
1 AAACGCCGCTATAGAACATGA-TCTTTAGC
3539 AGCATTTTTC
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
42 1 0.01
43 96 0.99
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGATCTTTAGCGACGCTTTTCCAAC
Found at i:7612 original size:22 final size:24
Alignment explanation
Indices: 7587--7639 Score: 76
Period size: 22 Copynumber: 2.3 Consensus size: 24
7577 AGCACAGGGG
7587 TGCTAAAT-GGAGAGCACAA-ACA
1 TGCTAAATCGGAGAGCACAATACA
*
7609 TGCT-AATCGGAGAGCACAATACG
1 TGCTAAATCGGAGAGCACAATACA
7632 TGCTAAAT
1 TGCTAAAT
7640 AAACAGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 3 0.11
22 15 0.56
23 6 0.22
24 3 0.11
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (24 bp):
TGCTAAATCGGAGAGCACAATACA
Found at i:11574 original size:21 final size:20
Alignment explanation
Indices: 11546--11586 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
11536 CAGATGGGAA
11546 AATAAATTATTACTAGATAT
1 AATAAATTATTACTAGATAT
*
11566 AATATAATTATTACTATATAT
1 AATA-AATTATTACTAGATAT
11587 TTTAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (20 bp):
AATAAATTATTACTAGATAT
Found at i:11851 original size:15 final size:16
Alignment explanation
Indices: 11831--11860 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11821 GGGTTTTTTA
11831 ATTTGG-GATTTGGGG
1 ATTTGGAGATTTGGGG
11846 ATTTGGAGATTTGGG
1 ATTTGGAGATTTGGG
11861 AGTTCATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (16 bp):
ATTTGGAGATTTGGGG
Found at i:13308 original size:42 final size:42
Alignment explanation
Indices: 13248--13581 Score: 313
Period size: 42 Copynumber: 8.1 Consensus size: 42
13238 AAAAGCATTA
* *
13248 GCGGCGTTTTTCCCATAAACGCCTCTAATGCTCTTTACCTTTT
1 GCGGCG-TTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
** * *
13291 GCGGCGTTTTCCCATAAACGCTACTATT--ACTTTGCCTTTT
1 GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
**** ** *
13331 GTTATGTTTTCTTATAAACGCCGCTATTTCTCTTTACCTTTT
1 GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
* ** * * * *
13373 GCGGCGATTAT-GGAAAAAAGCCGTTATTG--CTTTACTTTTT
1 GCGGCG-TTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
* * *
13413 GTGACGTTTTACCATAAACGCCGCTATTG--CTTTACCTTTT
1 GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
* * * *
13453 ACAGCATTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTT
1 GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
* *
13495 GTGGCGTTTTCCTATAAACGCCGCTATTGCTCTTTACCTTTT
1 GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
* * *
13537 GCGGTGTTTTCCTATAAACACCGCTATTGCTCTTTACCTTTT
1 GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
13579 GCG
1 GCG
13582 AAGTTTTTCC
Statistics
Matches: 233, Mismatches: 52, Indels: 13
0.78 0.17 0.04
Matches are distributed among these distances:
39 3 0.01
40 90 0.39
42 131 0.56
43 9 0.04
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (42 bp):
GCGGCGTTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTT
Found at i:13413 original size:82 final size:82
Alignment explanation
Indices: 13262--13540 Score: 244
Period size: 82 Copynumber: 3.4 Consensus size: 82
13252 CGTTTTTCCC
* * * * * * * ** * *
13262 ATAAACGCCTCTAATGCTCTTTACCTTTTGCGGCGTTTTCCCATAAACGCTACTATT-ACTTTGC
1 ATAAACGCCGCTATTTCTCTTTACCTTTTGCGGCATTATCCCAAAAAAGCCGCTATTGCCTTTAC
* * *
13326 CTTTTGTTATGTTTTCTT
66 TTTTTGTGACGTTTTC-T
** *
13344 ATAAACGCCGCTATTTCTCTTTACCTTTTGCGGCGATTAT-GGAAAAAAGCCGTTATTG-CTTTA
1 ATAAACGCCGCTATTTCTCTTTACCTTTTGCGGC-ATTATCCCAAAAAAGCCGCTATTGCCTTTA
*
13407 CTTTTTGTGACGTTTTACC
65 CTTTTTGTGACGTTTT-CT
* * * * * *
13426 ATAAACGCCGCTA-TT-GCTTTACCTTTTACAGCATTTTCCCATAAACGCCGCTATTGCTCTTTA
1 ATAAACGCCGCTATTTCTCTTTACCTTTTGCGGCATTATCCCAAAAAAGCCGCTATTGC-CTTTA
*
13489 CTTTTTGTGGCGTTTTCCT
65 CTTTTTGTGACGTTTT-CT
*
13508 ATAAACGCCGCTATTGCTCTTTACCTTTTGCGG
1 ATAAACGCCGCTATTTCTCTTTACCTTTTGCGG
13541 TGTTTTCCTA
Statistics
Matches: 156, Mismatches: 33, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
79 4 0.03
80 27 0.17
81 2 0.01
82 105 0.67
83 5 0.03
84 13 0.08
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (82 bp):
ATAAACGCCGCTATTTCTCTTTACCTTTTGCGGCATTATCCCAAAAAAGCCGCTATTGCCTTTAC
TTTTTGTGACGTTTTCT
Found at i:13441 original size:40 final size:40
Alignment explanation
Indices: 13255--13619 Score: 229
Period size: 42 Copynumber: 8.9 Consensus size: 40
13245 TTAGCGGCGT
* * * * *
13255 TTTTCCCATAAACGCCTCTAATGCTCTTTACCTTTTGCGGCG
1 TTTTCCTATAAACGCCGCTATTG--CTTTACCTTTTGTGACG
* ** * * * *
13297 TTTTCCCATAAACGCTACTATTACTTTGCCTTTTGTTATG
1 TTTTCCTATAAACGCCGCTATTGCTTTACCTTTTGTGACG
* * * *
13337 TTTTCTTATAAACGCCGCTATTTCTCTTTACCTTTTGCGGCG
1 TTTTCCTATAAACGCCGCTA-TT-GCTTTACCTTTTGTGACG
* ** * * * *
13379 ATTAT-GGAAAAAAGCCGTTATTGCTTTACTTTTTGTGACG
1 -TTTTCCTATAAACGCCGCTATTGCTTTACCTTTTGTGACG
** *
13419 TTTTACC-ATAAACGCCGCTATTGCTTTACCTTTT-ACAGCA
1 TTTT-CCTATAAACGCCGCTATTGCTTTACCTTTTGTGA-CG
* * *
13459 TTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTTGTGGCG
1 TTTTCCTATAAACGCCGCTATTG--CTTTACCTTTTGTGACG
* **
13501 TTTTCCTATAAACGCCGCTATTGCTCTTTACCTTTTGCGGTG
1 TTTTCCTATAAACGCCGCTATTG--CTTTACCTTTTGTGACG
* * *
13543 TTTTCCTATAAACACCGCTATTGCTCTTTACCTTTTGCGAAG
1 TTTTCCTATAAACGCCGCTATTG--CTTTACCTTTTGTGACG
* *
13585 TTTTTCCTATAAATG-C-C-ATTGCTTTACCTATTGTG
1 -TTTTCCTATAAACGCCGCTATTGCTTTACCTTTTGTG
13620 GTGTTTCTGG
Statistics
Matches: 258, Mismatches: 54, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
38 12 0.05
39 6 0.02
40 90 0.35
41 5 0.02
42 130 0.50
43 15 0.06
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.42
Consensus pattern (40 bp):
TTTTCCTATAAACGCCGCTATTGCTTTACCTTTTGTGACG
Found at i:13653 original size:204 final size:202
Alignment explanation
Indices: 13255--13705 Score: 453
Period size: 204 Copynumber: 2.2 Consensus size: 202
13245 TTAGCGGCGT
* * * * *
13255 TTTTCCCATAAACGCCTCTAATGCTCTTTACCTTTTGCGGCGTTTTCCCATAAACGCTACTATTA
1 TTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTTGTGGCGTTTTCCCATAAACGCCACTATTA
* ** * * * ** *
13320 CTTTGCCTTTTGTTATGTTTTCTTATAAACGCCGCTATTTCTCTTTACCTTTTGCGGCGATTATG
66 CTTTACCTTTTGCGATGTTTTCCTATAAACACCGCTATTGCTCTTTACCTTTTGCGAAGATTATC
* * *
13385 GAAAAAAGCCGTTATTGCTTTACTTTTTGTGACGTTTTACCATAAACGCCGCTATTGCTTTACCT
131 GAAAAAAGCC--TATTGCTTTACCTATTGTGACGTTTTACCATAAACGCCACTATTGCTTTACCT
13450 TTTACAGCA
194 TTTACAGCA
* *
13459 TTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTTGTGGCGTTTTCCTATAAACGCCGCTATTG
1 TTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTTGTGGCGTTTTCCCATAAACGCCACTATT-
* * * *
13524 CTCTTTACCTTTTGCGGTGTTTTCCTATAAACACCGCTATTGCTCTTTACCTTTTGCGAAGTTTT
65 -ACTTTACCTTTTGCGATGTTTTCCTATAAACACCGCTATTGCTCTTTACCTTTTGCGAAGATTA
* * * ** *** * * *
13589 TCCTATAAATGCC-ATTGCTTTACCTATTGTGGTGTTTCTGGGA-AAATGTCACTATTGTTTTAC
129 T-CGAAAAAAGCCTATTGCTTTACCTATTGTGACGTTT-TACCATAAACGCCACTATTGCTTTAC
* *
13652 CTTTTGCAGCG
192 CTTTTACAGCA
** *
13663 TTTAT-TGAAAAACGCCGCTATTG--CTTTACTTTTTGTGGCGTTT
1 TTT-TCCCATAAACGCCGCTATTGCTCTTTACTTTTTGTGGCGTTT
13706 CGGTCCAAAC
Statistics
Matches: 203, Mismatches: 39, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
202 20 0.10
204 120 0.59
205 3 0.01
206 53 0.26
207 7 0.03
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (202 bp):
TTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTTGTGGCGTTTTCCCATAAACGCCACTATTA
CTTTACCTTTTGCGATGTTTTCCTATAAACACCGCTATTGCTCTTTACCTTTTGCGAAGATTATC
GAAAAAAGCCTATTGCTTTACCTATTGTGACGTTTTACCATAAACGCCACTATTGCTTTACCTTT
TACAGCA
Found at i:13704 original size:40 final size:40
Alignment explanation
Indices: 13248--13705 Score: 227
Period size: 40 Copynumber: 11.2 Consensus size: 40
13238 AAAAGCATTA
** * *
13248 GCGGCGTTTTTCCCATAAACGCCTCTAATGCTCTTTACCTTTT
1 GCGGCG-TTTTCTGATAAACGCCGCTATTG--CTTTACCTTTT
** ** * *
13291 GCGGCGTTTTCCCATAAACGCTACTATTACTTTGCCTTTT
1 GCGGCGTTTTCTGATAAACGCCGCTATTGCTTTACCTTTT
**** * *
13331 GTTATGTTTTCTTATAAACGCCGCTATTTCTCTTTACCTTTT
1 GCGGCGTTTTCTGATAAACGCCGCTA-TT-GCTTTACCTTTT
* * * * * *
13373 GCGGCGATTAT-GGAAAAAAGCCGTTATTGCTTTACTTTTT
1 GCGGCG-TTTTCTGATAAACGCCGCTATTGCTTTACCTTTT
* * *
13413 GTGACGTTTTAC-CATAAACGCCGCTATTGCTTTACCTTTT
1 GCGGCGTTTT-CTGATAAACGCCGCTATTGCTTTACCTTTT
* * * ** *
13453 ACAGCATTTTCCCATAAACGCCGCTATTGCTCTTTACTTTTT
1 GCGGCGTTTTCTGATAAACGCCGCTATTG--CTTTACCTTTT
*
13495 GTGGCGTTTTCCT-ATAAACGCCGCTATTGCTCTTTACCTTTT
1 GCGGCGTTTT-CTGATAAACGCCGCTATTG--CTTTACCTTTT
* *
13537 GCGGTGTTTTCCT-ATAAACACCGCTATTGCTCTTTACCTTTT
1 GCGGCGTTTT-CTGATAAACGCCGCTATTG--CTTTACCTTTT
** * *
13579 GCGAAGTTTTTCCT-ATAAATG-C-C-ATTGCTTTACCTATT
1 GCGGCG-TTTT-CTGATAAACGCCGCTATTGCTTTACCTTTT
* * * * * *
13617 GTGGTG-TTTCTGGGA-AAATGTCACTATTGTTTTACCTTTT
1 GCGGCGTTTTCT--GATAAACGCCGCTATTGCTTTACCTTTT
* * *
13657 GCAGCGTTTAT-TGAAAAACGCCGCTATTGCTTTACTTTTT
1 GCGGCGTTT-TCTGATAAACGCCGCTATTGCTTTACCTTTT
*
13697 GTGGCGTTT
1 GCGGCGTTT
13706 CGGTCCAAAC
Statistics
Matches: 326, Mismatches: 70, Indels: 41
0.75 0.16 0.09
Matches are distributed among these distances:
35 2 0.01
36 3 0.01
37 5 0.02
38 15 0.05
39 7 0.02
40 134 0.41
41 8 0.02
42 130 0.40
43 22 0.07
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (40 bp):
GCGGCGTTTTCTGATAAACGCCGCTATTGCTTTACCTTTT
Found at i:15820 original size:59 final size:58
Alignment explanation
Indices: 15753--16008 Score: 256
Period size: 59 Copynumber: 4.4 Consensus size: 58
15743 GACACTCTGA
* * * *
15753 GTAAAATGGTAATTTTGGAAAAGTCGAGGGTCAAAAATGAAATTTTTAGACA-TCCGTGA
1 GTAAAATGGTAATTTTGGAAAAAT-GAGGGTCAAAAATGAAATTTTTAGA-AGTTCGGGG
* * * ** *
15812 GTATAATGGTCATTTTTGGAAAAAT-ATGGGACAAAAAATG-AATTTTGGGAAGTTTGGGG
1 GTAAAATGGT-AATTTTGGAAAAATGA-GGGTC-AAAAATGAAATTTTTAGAAGTTCGGGG
* *
15871 GTAAAATGGTAATTTTGGAAAAAATCGA-GGTCAAAAATGGAATTTTTGGAAGTTCGGGG
1 GTAAAATGGTAATTTTGG-AAAAAT-GAGGGTCAAAAATGAAATTTTTAGAAGTTCGGGG
* *
15930 GTAAAATGGTAA-TTTGGAAAAAATTAGGGTCAAAAATGAAATTTCTTA-AAGTTCGAGG
1 GTAAAATGGTAATTTTGG-AAAAATGAGGGTCAAAAATGAAATTT-TTAGAAGTTCGGGG
15988 GTAAAATGGTAATTTT-GAAAA
1 GTAAAATGGTAATTTTGGAAAA
16009 GTTTAAGGGT
Statistics
Matches: 167, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
57 5 0.03
58 66 0.40
59 76 0.46
60 19 0.11
61 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (58 bp):
GTAAAATGGTAATTTTGGAAAAATGAGGGTCAAAAATGAAATTTTTAGAAGTTCGGGG
Found at i:15938 original size:118 final size:118
Alignment explanation
Indices: 15753--16008 Score: 285
Period size: 118 Copynumber: 2.2 Consensus size: 118
15743 GACACTCTGA
* * *
15753 GTAAAATGGTAATTTTGG-AAAAGTCGAGGGTCAAAAATGAAATTTTTAGACATCCGTGAGTATA
1 GTAAAATGGTAATTTTGGAAAAAATCGAGGGTCAAAAATGAAATTTTTAGACATCCGGGAGTAAA
* * * *
15817 ATGGTCATTTTTGG-AAAAA-TATGGGACAAAAAATG-AATTT-TGGGAAGTTTGGGG
66 ATGGT-A-ATTTGGAAAAAATTA-GGGAC-AAAAATGAAATTTCT-GAAAGTTCGAGG
* * * *
15871 GTAAAATGGTAATTTTGGAAAAAATCGA-GGTCAAAAATGGAATTTTTGGA-AGTTCGGGGGTAA
1 GTAAAATGGTAATTTTGGAAAAAATCGAGGGTCAAAAATGAAATTTTTAGACA-TCCGGGAGTAA
* *
15934 AATGGTAATTTGGAAAAAATTAGGGTCAAAAATGAAATTTCTTAAAGTTCGAGG
65 AATGGTAATTTGGAAAAAATTAGGGACAAAAATGAAATTTCTGAAAGTTCGAGG
15988 GTAAAATGGTAATTTT-GAAAA
1 GTAAAATGGTAATTTTGGAAAA
16009 GTTTAAGGGT
Statistics
Matches: 119, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
116 17 0.14
117 40 0.34
118 54 0.45
119 8 0.07
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (118 bp):
GTAAAATGGTAATTTTGGAAAAAATCGAGGGTCAAAAATGAAATTTTTAGACATCCGGGAGTAAA
ATGGTAATTTGGAAAAAATTAGGGACAAAAATGAAATTTCTGAAAGTTCGAGG
Found at i:15946 original size:58 final size:58
Alignment explanation
Indices: 15753--16037 Score: 244
Period size: 58 Copynumber: 4.9 Consensus size: 58
15743 GACACTCTGA
* * * * *
15753 GTAAAATGGTAATTTTGG-AAAAGTCGAGGGTCAAAAATGAAATTTTTAGACA-TCCGTGA
1 GTAAAATGGTAA-TTTGGAAAAAAT-GAGGGTCAAAAATGAAATTTTTGGA-AGTTCGGGG
* * * * *
15812 GTATAATGGTCATTTTTGG-AAAAAT-ATGGGACAAAAAATG-AATTTTGGGAAGTTTGGGG
1 GTAAAATGGT-A-ATTTGGAAAAAATGA-GGGTC-AAAAATGAAATTTTTGGAAGTTCGGGG
*
15871 GTAAAATGGTAATTTTGGAAAAAATCGA-GGTCAAAAATGGAATTTTTGGAAGTTCGGGG
1 GTAAAATGGTAA-TTTGGAAAAAAT-GAGGGTCAAAAATGAAATTTTTGGAAGTTCGGGG
* * *
15930 GTAAAATGGTAATTTGGAAAAAATTAGGGTCAAAAATGAAATTTCTT-AAAGTTCGAGG
1 GTAAAATGGTAATTTGGAAAAAATGAGGGTCAAAAATGAAATTT-TTGGAAGTTCGGGG
* ** * *
15988 GTAAAATGGTAATTTTGAAAAGTTTAAGGGT-AAAAATGTAATTTTTGGAA
1 GTAAAATGGTAATTTGGAAAA-AATGAGGGTCAAAAATGAAATTTTTGGAA
16038 AAATCAGGGT
Statistics
Matches: 187, Mismatches: 25, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
57 3 0.02
58 86 0.46
59 79 0.42
60 18 0.10
61 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (58 bp):
GTAAAATGGTAATTTGGAAAAAATGAGGGTCAAAAATGAAATTTTTGGAAGTTCGGGG
Found at i:15993 original size:29 final size:27
Alignment explanation
Indices: 15955--16062 Score: 74
Period size: 30 Copynumber: 3.7 Consensus size: 27
15945 GGAAAAAATT
15955 AGGGTCAAAAATGAAATTTCTTAAAGTTC
1 AGGGT-AAAAATGAAATTT-TTAAAGTTC
* * *
15984 GAGGGT-AAAATGGTAATTTTGAAAAGTTTA
1 -AGGGTAAAAAT-GAAATTTT-TAAAG-TTC
* **
16014 AGGGTAAAAATGTAATTTTTGGAAAAATC
1 AGGGTAAAAATGAAATTTTT--AAAGTTC
16043 AGGGTTAAAAATGAAATTTT
1 AGGG-TAAAAATGAAATTTT
16063 AGAAAGTTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
28 6 0.10
29 28 0.44
30 29 0.46
ACGTcount: A:0.43, C:0.04, G:0.21, T:0.32
Consensus pattern (27 bp):
AGGGTAAAAATGAAATTTTTAAAGTTC
Found at i:16047 original size:58 final size:59
Alignment explanation
Indices: 15869--16153 Score: 230
Period size: 58 Copynumber: 4.9 Consensus size: 59
15859 GGAAGTTTGG
** * * ** *
15869 GGGTAAAATGGTAATTTTGGAAAAAATCGA-GGTCAAAAATGGAATTTTTGG-AAGTTCGG
1 GGGTAAAATGGTAATTTT-GAAAAGTTTGAGGGT-AAAAATGTAATTTTTGGAAAAATCGA
* ** * **
15928 GGGTAAAATGGTAATTTGGAAAAAATT-AGGGTCAAAAATGAAATTTCTT--AAAGTTCGA
1 GGGTAAAATGGTAATTTTGAAAAGTTTGAGGGT-AAAAATGTAATTT-TTGGAAAAATCGA
*
15986 GGGTAAAATGGTAATTTTGAAAAGTTTAAGGGTAAAAATGTAATTTTTGGAAAAATC-A
1 GGGTAAAATGGTAATTTTGAAAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAAATCGA
* * * * *
16044 GGGTTAAAAAT-GAAATTTT-AGAAAGTTTGGGGGTAAAATTTTAATTTTTGGAAAAATTG-
1 GGG-T-AAAATGGTAATTTTGA-AAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAAATCGA
* * *
16103 GGGTTAAAATGG-AATTTTGGAAAGTTCGAGGGTAAAAATATAATTTTTGGA
1 GGG-TAAAATGGTAATTTTGAAAAGTTTGAGGGTAAAAATGTAATTTTTGGA
16154 TAGTTTAGGG
Statistics
Matches: 193, Mismatches: 21, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
57 3 0.02
58 110 0.57
59 75 0.39
60 5 0.03
ACGTcount: A:0.40, C:0.03, G:0.25, T:0.32
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTGAAAAGTTTGAGGGTAAAAATGTAATTTTTGGAAAAATCGA
Found at i:16069 original size:59 final size:57
Alignment explanation
Indices: 15985--16153 Score: 196
Period size: 59 Copynumber: 2.9 Consensus size: 57
15975 TTAAAGTTCG
* * *
15985 AGGG-TAAAATGGTAATTTTGAAAAGTTTAAGGGTAAAAATGTAATTTTTGGAAAAATC
1 AGGGTTAAAAT-GAAATTTTG-AAAGTTTGAGGGTAAAAATATAATTTTTGGAAAAATC
* * * *
16043 AGGGTTAAAAATGAAATTTTAGAAAGTTTGGGGGTAAAATTTTAATTTTTGGAAAAATT
1 AGGGTT-AAAATGAAATTTT-GAAAGTTTGAGGGTAAAAATATAATTTTTGGAAAAATC
* * *
16102 GGGGTTAAAATGGAATTTTGGAAAGTTCGAGGGTAAAAATATAATTTTTGGA
1 AGGGTTAAAATGAAATTTT-GAAAGTTTGAGGGTAAAAATATAATTTTTGGA
16154 TAGTTTAGGG
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
58 44 0.46
59 45 0.47
60 6 0.06
ACGTcount: A:0.40, C:0.01, G:0.24, T:0.34
Consensus pattern (57 bp):
AGGGTTAAAATGAAATTTTGAAAGTTTGAGGGTAAAAATATAATTTTTGGAAAAATC
Found at i:16080 original size:29 final size:29
Alignment explanation
Indices: 15845--16158 Score: 134
Period size: 29 Copynumber: 10.8 Consensus size: 29
15835 ATATGGGACA
* * *
15845 AAAAATG-AATTTTGGGAAGTTTGGGGGT
1 AAAAATGAAATTTTGGAAAGTTCGAGGGT
* **
15873 -AAAATGGTAATTTTGGAAAAAATCGA-GGT
1 AAAAAT-GAAATTTTGG-AAAGTTCGAGGGT
* *
15902 CAAAAATGGAATTTTTGG-AAGTTCGGGGGT
1 -AAAAAT-GAAATTTTGGAAAGTTCGAGGGT
* *
15932 -AAAATGGTAA-TTTGGAAAAAATT--AGGGT
1 AAAAAT-GAAATTTTGG--AAAGTTCGAGGGT
*
15960 CAAAAATGAAATTTCT-TAAAGTTCGAGGGT
1 -AAAAATGAAATTT-TGGAAAGTTCGAGGGT
* * **
15990 -AAAATGGTAATTTTGAAAAGTTTAAGGGT
1 AAAAAT-GAAATTTTGGAAAGTTCGAGGGT
* **
16019 AAAAATGTAATTTTTGGAAAAATC-AGGGTT
1 AAAAATG-AAATTTTGGAAAGTTCGAGGG-T
* * *
16049 AAAAATGAAATTTTAGAAAGTTTGGGGGT
1 AAAAATGAAATTTTGGAAAGTTCGAGGGT
* * * *
16078 AAAATTTTAATTTTTGGAAAAATT-G-GGGT
1 AAAA-ATGAAATTTTGG-AAAGTTCGAGGGT
* *
16107 TAAAATGGAATTTTGGAAAGTTCGAGGGT
1 AAAAATGAAATTTTGGAAAGTTCGAGGGT
*
16136 AAAAAT-ATAATTTTTGGATAGTT
1 AAAAATGA-AA-TTTTGGAAAGTT
16159 TAGGGACCTG
Statistics
Matches: 212, Mismatches: 47, Indels: 52
0.68 0.15 0.17
Matches are distributed among these distances:
27 15 0.07
28 33 0.16
29 75 0.35
30 69 0.33
31 20 0.09
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.33
Consensus pattern (29 bp):
AAAAATGAAATTTTGGAAAGTTCGAGGGT
Found at i:17224 original size:3 final size:3
Alignment explanation
Indices: 17210--17401 Score: 219
Period size: 3 Copynumber: 64.0 Consensus size: 3
17200 TTCAATTTAT
* *
17210 TTA TTT TTA TTA TTA GTA TTA TTA TTA TTAA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* * * * * *
17255 TTA TTTA ATG TTA TTA TTA TTG TTA TTA -TG TTA TTA ATA TCAA TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
* * * * *
17301 ATG TCA TCA GTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17348 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17396 TTA TTA
1 TTA TTA
17402 ATTCGTTTAA
Statistics
Matches: 159, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
2 5 0.03
3 146 0.92
4 8 0.05
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:18108 original size:6 final size:6
Alignment explanation
Indices: 18089--18147 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
18079 AAATTGTCTC
** **
18089 AAATTT -AA-TT AAATTT AAATTT AAA-GC AAATTT AAATTT AAAGAAT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAA-TTT
18135 AAATTT AAATTT A
1 AAATTT AAATTT A
18148 TGATAACTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
4 2 0.05
5 7 0.17
6 28 0.68
7 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (6 bp):
AAATTT
Found at i:18121 original size:17 final size:18
Alignment explanation
Indices: 18099--18178 Score: 76
Period size: 17 Copynumber: 4.5 Consensus size: 18
18089 AAATTTAATT
18099 AAATTTAAATTTAAAG-C
1 AAATTTAAATTTAAAGAC
*
18116 AAATTTAAATTTAAAGAAT
1 AAATTTAAATTTAAAG-AC
* *
18135 AAATTTAAATTT-ATGAT
1 AAATTTAAATTTAAAGAC
* *
18152 AACTTTCAATTTAAA-AC
1 AAATTTAAATTTAAAGAC
18169 TAAATTTAAA
1 -AAATTTAAA
18179 ATCAATTTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
17 29 0.57
18 10 0.20
19 12 0.24
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.39
Consensus pattern (18 bp):
AAATTTAAATTTAAAGAC
Found at i:18163 original size:36 final size:35
Alignment explanation
Indices: 18098--18178 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 35
18088 CAAATTTAAT
18098 TAAATTTAAATTTAAAGCAAATTTAAATTTAAAGAA
1 TAAATTTAAATTTAAAGCAAATTTAAATTTAAA-AA
* * *
18134 TAAATTTAAATTT-ATG-ATAACTTTCAATTTAAAAC
1 TAAATTTAAATTTAAAGCA-AA-TTTAAATTTAAAAA
18169 TAAATTTAAA
1 TAAATTTAAA
18179 ATCAATTTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
34 1 0.03
35 15 0.38
36 24 0.60
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.40
Consensus pattern (35 bp):
TAAATTTAAATTTAAAGCAAATTTAAATTTAAAAA
Found at i:18763 original size:49 final size:49
Alignment explanation
Indices: 18616--19057 Score: 350
Period size: 49 Copynumber: 9.0 Consensus size: 49
18606 TTTCTACTTT
* * *
18616 TGAGGTA-TAAGGTTTGCCATTACGACTTAAACCTTTTCCCCTTGTGTCTTC
1 TGAGGTACT-AGGTTCGCCATTGCGACTTAAACC-TTT-CCCTTATGTCTTC
* * * * * * *
18667 -GCGGTACT-GGATCTGTCGTTGCGGCTTACATCTTTCCCTTCATGTCTTC
1 TGAGGTACTAGGTTC-GCCATTGCGACTTAAACCTTTCCCTT-ATGTCTTC
*
18716 TGAGGTACTAGGTTCGCCTTTGCGACTTAAACCTTTCCCTTATGTCTTC
1 TGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCTTATGTCTTC
* * * * * * * *
18765 GTTACGGTACT-GGATCCACCATTGTGGCCTAGATCTTTCCCTTCATGTCTT-
1 -TGA-GGTACTAGG-TTCGCCATTGCGACTTAAACCTTTCCCTT-ATGTCTTC
*
18816 TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTC
1 TGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCTTATGTCTTC
* * * * * * *
18865 -GTGGTACT-GGATCCGCCGTTGCGGCTCAGATCTTTCCCTTCATGTC-TC
1 TGAGGTACTAGG-TTCGCCATTGCGACTTAAACCTTTCCCTT-ATGTCTTC
* *
18913 TGAGGTACTAGGTTTGCCATTACGACTTAAACCTTTCCCTTATGTCTTC
1 TGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCTTATGTCTTC
* * * * * *
18962 -GTGGTACT-GGATC-CAAAATTGCGGCTTAGATCTTTCCCTTAATGTC-TC
1 TGAGGTACTAGGTTCGC--CATTGCGACTTAAACCTTTCCCTT-ATGTCTTC
*
19010 TGAGGTACTAGGTTCGCCATTGCGACGTAAACCTTTCCCTTATGTCTT
1 TGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCTTATGTCTT
19058 TGCAGTACTG
Statistics
Matches: 301, Mismatches: 67, Indels: 48
0.72 0.16 0.12
Matches are distributed among these distances:
46 1 0.00
47 5 0.02
48 81 0.27
49 115 0.38
50 59 0.20
51 33 0.11
52 7 0.02
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.37
Consensus pattern (49 bp):
TGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCTTATGTCTTC
Found at i:18926 original size:97 final size:97
Alignment explanation
Indices: 18616--19102 Score: 670
Period size: 97 Copynumber: 5.0 Consensus size: 97
18606 TTTCTACTTT
* * *
18616 TGAGGTA-TAAGGTTTGCCATTACGACTTAAACCTTTTCCCCTTGTGTCTTCGCGGTACTGGATC
1 TGAGGTACT-AGGTTTGCCATTGCGACTTAAACC-TTT-CCCTTATGTCTTCGTGGTACTGGATC
* * *
18680 TGTCGTTGCGGCTTACATCTTTCCCTTCATGTCTTC
63 CGCCGTTGCGGCTTAGATCTTTCCCTTCATGTC-TC
* *
18716 TGAGGTACTAGGTTCGCCTTTGCGACTTAAACCTTTCCCTTATGTCTTCGTTACGGTACTGGATC
1 TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTCG-T--GGTACTGGATC
* * * * *
18781 CACCATTGTGGCCTAGATCTTTCCCTTCATGTCTT
63 CGCCGTTGCGGCTTAGATCTTTCCCTTCATGTCTC
18816 TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTCGTGGTACTGGATCCGC
1 TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTCGTGGTACTGGATCCGC
*
18881 CGTTGCGGCTCAGATCTTTCCCTTCATGTCTC
66 CGTTGCGGCTTAGATCTTTCCCTTCATGTCTC
* **
18913 TGAGGTACTAGGTTTGCCATTACGACTTAAACCTTTCCCTTATGTCTTCGTGGTACTGGATCCAA
1 TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTCGTGGTACTGGATCCGC
** *
18978 AATTGCGGCTTAGATCTTTCCCTTAATGTCTC
66 CGTTGCGGCTTAGATCTTTCCCTTCATGTCTC
* * * **
19010 TGAGGTACTAGGTTCGCCATTGCGACGTAAACCTTTCCCTTATGTCTTTGCAGTACTGGATCCGC
1 TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTCGTGGTACTGGATCCGC
*
19075 CGTTGCGGCTTAGATCTTTCCCGTCATG
66 CGTTGCGGCTTAGATCTTTCCCTTCATG
19103 ATTCATGGTG
Statistics
Matches: 343, Mismatches: 40, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
97 211 0.62
98 13 0.04
99 4 0.01
100 77 0.22
101 38 0.11
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (97 bp):
TGAGGTACTAGGTTTGCCATTGCGACTTAAACCTTTCCCTTATGTCTTCGTGGTACTGGATCCGC
CGTTGCGGCTTAGATCTTTCCCTTCATGTCTC
Found at i:23558 original size:18 final size:19
Alignment explanation
Indices: 23516--23558 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
23506 ACAAGTCGTG
23516 CTTTTCTCATCTCTCGCTT
1 CTTTTCTCATCTCTCGCTT
* **
23535 CCTTTCT-ATCTCTTTCTT
1 CTTTTCTCATCTCTCGCTT
23553 CTTTTC
1 CTTTTC
23559 CTTCACGTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.05, C:0.35, G:0.02, T:0.58
Consensus pattern (19 bp):
CTTTTCTCATCTCTCGCTT
Found at i:27344 original size:16 final size:16
Alignment explanation
Indices: 27323--27363 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
27313 GTATCTTGAA
27323 ACTTGTTTTTCCAGTG
1 ACTTGTTTTTCCAGTG
27339 ACTTGTTTTTCCAGTG
1 ACTTGTTTTTCCAGTG
27355 ACTTGTTTT
1 ACTTGTTTT
27364 ATTCTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.17, G:0.17, T:0.54
Consensus pattern (16 bp):
ACTTGTTTTTCCAGTG
Found at i:30659 original size:57 final size:57
Alignment explanation
Indices: 30491--30780 Score: 244
Period size: 59 Copynumber: 5.0 Consensus size: 57
30481 TTTTGGACAC
* * * * *
30491 TCGGGAGTAAAATGGTAATTTTAGGAAAGTCGAGGGGTCAAAAACGGAATTTTTAGACA-T
1 TCGGGGGTAAAATGGTAATTTT-GGAAAAT-TA-GGGTCAAAAATGGAATTTTTGGA-AGT
* * * * * *
30551 CCGGGGGTATAATGGTACTTTTTGAAAGAATCGAGGTCAAAAATGGAATTTTTGGAAGT
1 TCGGGGGTAAAATGGTAATTTTGGAAA-ATTAG-GGTCAAAAATGGAATTTTTGGAAGT
* * * *
30610 TCGGGGGTAAAATGATCATTTTGGAAAATTAGGGTCAGAAATGGAATTTTGGGAAGT
1 TCGGGGGTAAAATGGTAATTTTGGAAAATTAGGGTCAAAAATGGAATTTTTGGAAGT
* * * * * *
30667 TTGGGGGT-AAATGGTAATTTTGGAAAAAATCAAGGTTAAAAAAGGAACTTTTGGAAGT
1 TCGGGGGTAAAATGGTAATTTTGG--AAAATTAGGGTCAAAAATGGAATTTTTGGAAGT
* * * *
30725 TCGAGGGTAAAATGGTAATTTTAGAAAGCTTAGGGGT-AAAAATGTAATTTTTGGAA
1 TCGGGGGTAAAATGGTAATTTTGGAAA-ATTA-GGGTCAAAAATGGAATTTTTGGAA
30781 AAATTAGGGT
Statistics
Matches: 182, Mismatches: 40, Indels: 18
0.76 0.17 0.08
Matches are distributed among these distances:
56 13 0.07
57 33 0.18
58 55 0.30
59 63 0.35
60 18 0.10
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.30
Consensus pattern (57 bp):
TCGGGGGTAAAATGGTAATTTTGGAAAATTAGGGTCAAAAATGGAATTTTTGGAAGT
Found at i:30788 original size:30 final size:29
Alignment explanation
Indices: 30613--30848 Score: 132
Period size: 29 Copynumber: 8.1 Consensus size: 29
30603 TGGAAGTTCG
*
30613 GGGGT-AAAATGATCATTTTGGAAA-ATTA
1 GGGGTAAAAATG-TAATTTTGGAAAGATTA
* * * * *
30641 -GGGTCAGAAATGGAATTTTGGGAAGTTTG
1 GGGGT-AAAAATGTAATTTTGGAAAGATTA
* *
30670 GGGGT--AAATGGTAATTTTGGAAAAAATCA
1 GGGGTAAAAAT-GTAATTTTGG-AAAGATTA
* * * * *
30699 AGGTTAAAAAAGGAACTTTTGG-AAG-TTC
1 GGGGTAAAAATGTAA-TTTTGGAAAGATTA
* *
30727 GAGGGT-AAAATGGTAATTTTAGAAAGCTTA
1 G-GGGTAAAAAT-GTAATTTTGGAAAGATTA
*
30757 GGGGTAAAAATGTAATTTTTGGAAAAATTA
1 GGGGTAAAAATGTAA-TTTTGGAAAGATTA
*
30787 -GGGTCAAAAAT-TGAATTTTGGAAAGTTTA
1 GGGGT-AAAAATGT-AATTTTGGAAAGATTA
* *
30816 GGGGTAAAAATGTAATTTTTGGATAGTTTA
1 GGGGTAAAAATGTAA-TTTTGGAAAGATTA
30846 GGG
1 GGG
30849 ACGTGTAGGT
Statistics
Matches: 157, Mismatches: 31, Indels: 38
0.69 0.14 0.17
Matches are distributed among these distances:
27 8 0.05
28 28 0.18
29 57 0.36
30 55 0.35
31 9 0.06
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (29 bp):
GGGGTAAAAATGTAATTTTGGAAAGATTA
Found at i:31915 original size:3 final size:3
Alignment explanation
Indices: 31893--31998 Score: 99
Period size: 3 Copynumber: 35.0 Consensus size: 3
31883 TTTAATTTCT
*
31893 TTA TTT TTA TTA TT- TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
31938 TTA TTA TTA TCAA TTA ATG TCA TCA GTA TTA -TA TTTA TTA TTA ATA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
31984 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
31999 ATTCGTTTAA
Statistics
Matches: 84, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
2 3 0.04
3 76 0.90
4 5 0.06
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:32655 original size:14 final size:14
Alignment explanation
Indices: 32626--32668 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
32616 ATTGTACTTG
32626 TAATTGGACATTTTA
1 TAATTGGAC-TTTTA
32641 TAATTGGACTTTTA
1 TAATTGGACTTTTA
*
32655 T-TTTGGACCTTTTA
1 TAATTGGA-CTTTTA
32669 ATTAAGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 9 0.35
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.51
Consensus pattern (14 bp):
TAATTGGACTTTTA
Found at i:34502 original size:25 final size:28
Alignment explanation
Indices: 34466--34522 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
34456 ATTACTTTAA
34466 TATTAAATTAA-TATT-AA-TAAACTAT
1 TATTAAATTAATTATTAAATTAAACTAT
*
34491 TATTAAGA-TAATTATTAAATTAAATTAT
1 TATTAA-ATTAATTATTAAATTAAACTAT
34519 TATT
1 TATT
34523 TTTTAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 9 0.33
26 5 0.19
27 2 0.07
28 11 0.41
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (28 bp):
TATTAAATTAATTATTAAATTAAACTAT
Done.