Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012268.1 Kokia drynarioides strain JFW-HI SEQ_127269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64501
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Found at i:3216 original size:23 final size:24
Alignment explanation
Indices: 3163--3216 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
3153 AAATTGAGCA
* *
3163 TGTTTTG-TTCTTGGATGTTGATG
1 TGTTTTGATTCTTGGATATGGATG
* *
3186 TATCTTGATT-TTGGATATGGATG
1 TGTTTTGATTCTTGGATATGGATG
3209 TGTTTTGA
1 TGTTTTGA
3217 CTGTTAAAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.15, C:0.04, G:0.28, T:0.54
Consensus pattern (24 bp):
TGTTTTGATTCTTGGATATGGATG
Found at i:8854 original size:10 final size:10
Alignment explanation
Indices: 8841--8874 Score: 52
Period size: 11 Copynumber: 3.4 Consensus size: 10
8831 ATAACAACTT
8841 ATAAAAAAAA
1 ATAAAAAAAA
8851 AT-AAAAAAA
1 ATAAAAAAAA
8860 ATAAGAAAAAA
1 ATAA-AAAAAA
8871 ATAA
1 ATAA
8875 TTTTTAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 3 0.14
11 10 0.45
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (10 bp):
ATAAAAAAAA
Found at i:11619 original size:20 final size:20
Alignment explanation
Indices: 11596--11635 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
11586 TATTCAAACT
* * *
11596 ATATTACTTTAATAGTTATA
1 ATATTAATTGAATAATTATA
11616 ATATTAATTGAATAATTATA
1 ATATTAATTGAATAATTATA
11636 TGTCTTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (20 bp):
ATATTAATTGAATAATTATA
Found at i:12280 original size:179 final size:179
Alignment explanation
Indices: 11975--12333 Score: 619
Period size: 179 Copynumber: 2.0 Consensus size: 179
11965 TAGGTGGGGC
* *
11975 GAATGTAAACTAAAATATAATGAATTGATACACGCCTTGGAGCCTTGTCCTATTTCTTCATTTTT
1 GAATATAAACTAAAATATAATGAATTGATACACCCCTTGGAGCCTTGTCCTATTTCTTCATTTTT
* *
12040 TGTTCGAGTTTCATTCGTGTGTTCAACATTTTACTCATCGAAAATTTGTATAAACACTAAGCTCC
66 TATTCGAGTTTCATTCGTGTGTTCAACATTTTACTCATCGAAAATTTGTACAAACACTAAGCTCC
12105 CACTATCATTATTTGGTTCATCAATTCCTGCATAAGATACATGTTCGAT
131 CACTATCATTATTTGGTTCATCAATTCCTGCATAAGATACATGTTCGAT
* * *
12154 GAATATAAACTAAAATATAGTGAATTGATACACCCCTTGGAGTCTTGTCCTATTTCTTTATTTTT
1 GAATATAAACTAAAATATAATGAATTGATACACCCCTTGGAGCCTTGTCCTATTTCTTCATTTTT
* *
12219 TATTCGAGTTTTATTCGTGTGTTCAACATTTTCCTCATCGAAAATTTGTACAAACACTAAGCTCC
66 TATTCGAGTTTCATTCGTGTGTTCAACATTTTACTCATCGAAAATTTGTACAAACACTAAGCTCC
* *
12284 CACTATCATTATTTGGTTCATCAATTCTTGCATAGGATACATGTTCGAT
131 CACTATCATTATTTGGTTCATCAATTCCTGCATAAGATACATGTTCGAT
12333 G
1 G
12334 GGGAGCCCCT
Statistics
Matches: 169, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
179 169 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (179 bp):
GAATATAAACTAAAATATAATGAATTGATACACCCCTTGGAGCCTTGTCCTATTTCTTCATTTTT
TATTCGAGTTTCATTCGTGTGTTCAACATTTTACTCATCGAAAATTTGTACAAACACTAAGCTCC
CACTATCATTATTTGGTTCATCAATTCCTGCATAAGATACATGTTCGAT
Found at i:13185 original size:33 final size:33
Alignment explanation
Indices: 13140--13225 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 33
13130 AAGTTCTCTA
**
13140 CATAAGTT-ATTGGAACATCTATCAGCGCTGCTT
1 CATAA-TTGATTGGAACATCTATCAGCGCAACTT
*
13173 CATCAA-TGATTGGAACATCTATCAGTGCAACTT
1 CAT-AATTGATTGGAACATCTATCAGCGCAACTT
*
13206 CATAATTGATTCGAACATCT
1 CATAATTGATTGGAACATCT
13226 CTCGAGACAG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
32 3 0.07
33 41 0.89
34 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (33 bp):
CATAATTGATTGGAACATCTATCAGCGCAACTT
Found at i:14418 original size:17 final size:17
Alignment explanation
Indices: 14398--14430 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14388 TTTGGAAATC
14398 TTACCTATTTTATCATT
1 TTACCTATTTTATCATT
14415 TTACCTATTTTATCAT
1 TTACCTATTTTATCAT
14431 CCTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (17 bp):
TTACCTATTTTATCATT
Found at i:15535 original size:33 final size:33
Alignment explanation
Indices: 15498--15577 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
15488 TCATCACAAG
* *
15498 TGATTGGAACATCTATCAGCT-CCACTTCATTAA
1 TGATTGGAACATCTATCAG-TGCAACTTCATCAA
*
15531 TGATTGGAACATCTATCAGTGCAACTTCATCAT
1 TGATTGGAACATCTATCAGTGCAACTTCATCAA
*
15564 TGATTCGAACATCT
1 TGATTGGAACATCT
15578 CTCAAGGCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.02
33 41 0.98
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.34
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGTGCAACTTCATCAA
Found at i:20687 original size:24 final size:24
Alignment explanation
Indices: 20660--20710 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
20650 AATTTGACTC
* *
20660 AAACAACTAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAACTG
20684 AAACAAATAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAACTG
20708 AAA
1 AAA
20711 GATTATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAACTG
Found at i:23776 original size:24 final size:24
Alignment explanation
Indices: 23708--23782 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
23698 AGAAATAATC
* * *
23708 TTTCAGTTAAACTCTGTTTAATTA
1 TTTCAATTAAACTCTGTTTATTTG
*
23732 CTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
*
23756 TTTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
23780 TTT
1 TTT
23783 GAGTAAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:23791 original size:24 final size:24
Alignment explanation
Indices: 23733--23794 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
23723 GTTTAATTAC
* *
23733 TTCAATTAAACTCTGTTTATTTGT
1 TTCAATAAAACTCTATTTATTTGT
*
23757 TTCAATTAAACTCTATTTATTTGT
1 TTCAATAAAACTCTATTTATTTGT
* *
23781 TTGAGTAAAACTCT
1 TTCAATAAAACTCT
23795 TATTAGTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (24 bp):
TTCAATAAAACTCTATTTATTTGT
Found at i:25810 original size:24 final size:24
Alignment explanation
Indices: 25724--25798 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
25714 AGAAATAATC
* *
25724 TTTCAGTTAAACTCTGTTTAATTG
1 TTTCAATTAAACTCTGTTTATTTG
* * *
25748 TTTCAATTAAACTTTATTTATTTA
1 TTTCAATTAAACTCTGTTTATTTG
25772 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
25796 TTT
1 TTT
25799 GAGTCAAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.27, C:0.11, G:0.07, T:0.56
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:28654 original size:29 final size:29
Alignment explanation
Indices: 28621--28685 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
28611 CGAATGACTA
28621 CTAGGGAGGATAGAAAGGGTGAATGGCGG
1 CTAGGGAGGATAGAAAGGGTGAATGGCGG
*
28650 CTAGGGAGGATAGAAAGGGTGAGTGGCGG
1 CTAGGGAGGATAGAAAGGGTGAATGGCGG
28679 CTAGGGA
1 CTAGGGA
28686 AGAAAAGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.49, T:0.14
Consensus pattern (29 bp):
CTAGGGAGGATAGAAAGGGTGAATGGCGG
Found at i:28942 original size:6 final size:6
Alignment explanation
Indices: 28931--28983 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
28921 ATATAATAAA
*
28931 AAAAAT AAAAAT --AAAT AGGAAAT AAAAAT AAAAGA- AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAA-AT AAAAAT AAAAAT
28978 AAAAAT
1 AAAAAT
28984 TGGGATAGGG
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
4 4 0.10
5 1 0.02
6 30 0.73
7 6 0.15
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:28958 original size:18 final size:16
Alignment explanation
Indices: 28925--28981 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 16
28915 CTGGACATAT
28925 AATAAAA-AAAATAAA
1 AATAAAAGAAAATAAA
*
28940 AATAAATAGGAAATAAA
1 AATAAA-AGAAAATAAA
28957 AATAAAAGAAAAAATAAA
1 AATAAAAG--AAAATAAA
28975 AATAAAA
1 AATAAAA
28982 ATTGGGATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
15 6 0.17
16 3 0.08
17 13 0.36
18 14 0.39
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (16 bp):
AATAAAAGAAAATAAA
Found at i:30257 original size:200 final size:200
Alignment explanation
Indices: 29900--30260 Score: 533
Period size: 200 Copynumber: 1.8 Consensus size: 200
29890 CTATTTACTA
* * * * * *
29900 TTAAATTTGTCCTGTTTTGGTACTGATGTCGTTGCATAACTAATTTCAGATTGCGTCTAGGATTG
1 TTAAATTTGTCATGTTTTGGTACTAATGTCGCTACATAACTAATTTCAGATTGCATCTAGGATTA
** *
29965 TCGCCGCATCTGACAATTGTCCGAATAAGAATAGAAATGTGTGAGCTGTTCAGTTTGGTATAACC
66 TCGCCGCATCTGACAACCGTCCGAATAAGAATAGAAATGTGTGAGCTGTCCAGTTTGGTATAACC
* * * *
30030 AACTTGTATGACCAGCGATAGCTTGATTCTGATTAACGGACACCTGTACAAAGACAACTTGTACT
131 AACTTGTACGACCAGAGACAACTTGATTCTGATTAACGGACACCTGTACAAAGACAACTTGTACT
30095 TACCC
196 TACCC
* *
30100 TTAATTTTGTCATGTTTTGGTACTAATGTCGCTACATAAGTAATTTCAGATTGCATCTAGGATTA
1 TTAAATTTGTCATGTTTTGGTACTAATGTCGCTACATAACTAATTTCAGATTGCATCTAGGATTA
* * * * * *
30165 TCGTCGCATCTGATAGCCGTCTGGATAAGAATATAAATGTGTGAGCTGTCCAGTTTGGTATAACC
66 TCGCCGCATCTGACAACCGTCCGAATAAGAATAGAAATGTGTGAGCTGTCCAGTTTGGTATAACC
30230 AACTTGTACGACCAGAGACAACTTGATTCTG
131 AACTTGTACGACCAGAGACAACTTGATTCTG
30261 CAAAAAAGAC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
200 140 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (200 bp):
TTAAATTTGTCATGTTTTGGTACTAATGTCGCTACATAACTAATTTCAGATTGCATCTAGGATTA
TCGCCGCATCTGACAACCGTCCGAATAAGAATAGAAATGTGTGAGCTGTCCAGTTTGGTATAACC
AACTTGTACGACCAGAGACAACTTGATTCTGATTAACGGACACCTGTACAAAGACAACTTGTACT
TACCC
Found at i:38018 original size:17 final size:17
Alignment explanation
Indices: 37998--38030 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37988 TTATTTGGAA
37998 ATCTTACCTATTTTATC
1 ATCTTACCTATTTTATC
38015 ATCTTACCTATTTTAT
1 ATCTTACCTATTTTAT
38031 TATCCTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (17 bp):
ATCTTACCTATTTTATC
Found at i:39165 original size:33 final size:33
Alignment explanation
Indices: 39103--39182 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
39093 TCTACATAAG
* ***
39103 TGATTGGAACATCTATCAGCGCCGCTTCATCAA
1 TGATTGGAACATCTATCAACGCAAATTCATCAA
* *
39136 TGATTGGAACATCTATCAATGCAAATTCATCAT
1 TGATTGGAACATCTATCAACGCAAATTCATCAA
*
39169 TGATTCGAACATCT
1 TGATTGGAACATCT
39183 CTCGGGGCAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (33 bp):
TGATTGGAACATCTATCAACGCAAATTCATCAA
Found at i:42703 original size:38 final size:38
Alignment explanation
Indices: 42647--42723 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
42637 AGTTTATATA
* *
42647 CTAGAAAACCTTCGAAATATTTTATATATATACAAAGG
1 CTAGAAAACCTTCAAAATACTTTATATATATACAAAGG
42685 CTAGAAAACCTTCAAAATACTTTATATATATACAAAGG
1 CTAGAAAACCTTCAAAATACTTTATATATATACAAAGG
42723 C
1 C
42724 ATGGGAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (38 bp):
CTAGAAAACCTTCAAAATACTTTATATATATACAAAGG
Found at i:43170 original size:33 final size:33
Alignment explanation
Indices: 43127--43205 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
43117 AATGTGTAAG
*
43127 TGATTAGAACATCTATCAGCGCTACTTCATCAA
1 TGATTAGAACATCTATCAGCGCAACTTCATCAA
* * *
43160 TGATTGGAACATCTATCAGTGCAACTTCATCAT
1 TGATTAGAACATCTATCAGCGCAACTTCATCAA
*
43193 TGATTTGAACATC
1 TGATTAGAACATC
43206 CCTCGGGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.33
Consensus pattern (33 bp):
TGATTAGAACATCTATCAGCGCAACTTCATCAA
Found at i:46434 original size:23 final size:23
Alignment explanation
Indices: 46399--46444 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
46389 TGTTTTCTTC
* *
46399 TTGGATGTTGATGTATCTTGATT
1 TTGGATATGGATGTATCTTGATT
* *
46422 TTGGATATGGATGTGTTTTGATT
1 TTGGATATGGATGTATCTTGATT
46445 GTTAAAGACT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (23 bp):
TTGGATATGGATGTATCTTGATT
Found at i:50775 original size:33 final size:33
Alignment explanation
Indices: 50714--50793 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
50704 TCTACATAAG
* **
50714 TGATTGGAAAATCTATCAGCGCCGCTTCATCAA
1 TGATTGGAACATCTATCAGCGCAACTTCATCAA
* * *
50747 TGATAGGAACATCTATCAGTGCAACTTCATCAT
1 TGATTGGAACATCTATCAGCGCAACTTCATCAA
*
50780 TGATTCGAACATCT
1 TGATTGGAACATCT
50794 CTCGGGATAG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGCGCAACTTCATCAA
Found at i:52030 original size:42 final size:42
Alignment explanation
Indices: 51983--52068 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
51973 GCACATTGGT
51983 ATATATTTAAAATAGGAAAAAATCAAAAAAATTACCTAAAAA
1 ATATATTTAAAATAGGAAAAAATCAAAAAAATTACCTAAAAA
** * *
52025 ATATATTTAAAATAGGAATGAATCAAAAAATTTAGCTAAAAA
1 ATATATTTAAAATAGGAAAAAATCAAAAAAATTACCTAAAAA
52067 AT
1 AT
52069 CCTTAAAGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.60, C:0.06, G:0.07, T:0.27
Consensus pattern (42 bp):
ATATATTTAAAATAGGAAAAAATCAAAAAAATTACCTAAAAA
Found at i:54508 original size:2 final size:2
Alignment explanation
Indices: 54501--54534 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
54491 TATCTTTGGA
*
54501 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54535 TAAATTTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:57137 original size:24 final size:24
Alignment explanation
Indices: 57104--57154 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
57094 AGAAATAATC
* *
57104 TTTCAGTTAAACTTTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
57128 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
57152 TTT
1 TTT
57155 GAGTCAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.59
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:57163 original size:24 final size:24
Alignment explanation
Indices: 57112--57164 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
57102 TCTTTCAGTT
* *
57112 AAACTTTGTTTATTTGTTTCAATT
1 AAACTCTGTTTATTTGTTTCAATC
* *
57136 AAACTCTGTTTATTTGTTTGAGTC
1 AAACTCTGTTTATTTGTTTCAATC
57160 AAACT
1 AAACT
57165 ATTATTAGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.51
Consensus pattern (24 bp):
AAACTCTGTTTATTTGTTTCAATC
Done.