genome.fa.s12271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012271.1 Kokia drynarioides strain JFW-HI SEQ_127272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121506

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871--1062	96	2.0	96	83	8	239	38	13	18	29	1.89
1303--1677	30	12.7	30	76	8	272	35	3	26	34	1.74
1311--1677	59	6.2	57	78	9	299	35	3	26	34	1.74
1303--1663	89	4.1	89	80	7	353	35	3	26	34	1.73
2647--2699	21	2.5	20	82	8	61	37	5	9	47	1.60
2670--2725	15	3.5	15	75	18	51	41	5	3	50	1.43
3383--3453	11	6.2	11	76	12	63	54	2	0	42	1.14
3382--3486	17	6.0	17	82	7	122	54	5	0	40	1.24
3382--3453	6	12.3	6	75	11	69	54	2	0	43	1.15
17451--17477	2	13.5	2	100	0	54	51	0	0	48	1.00
18165--18190	12	2.2	12	100	0	52	19	15	50	15	1.79
23367--23406	18	2.2	18	100	0	80	35	27	30	7	1.84
29703--29739	16	2.3	16	95	0	65	43	0	0	56	0.99
44142--44167	6	4.3	6	100	0	52	69	15	15	0	1.20
56322--56368	24	1.9	25	86	4	69	70	2	4	23	1.16
56313--56368	23	2.3	24	85	11	71	69	3	3	23	1.20
56672--56938	41	6.5	41	76	5	150	34	18	26	20	1.96
57653--57684	15	2.1	15	94	0	55	46	9	0	43	1.35
60617--60657	21	2.0	21	85	0	55	34	12	48	4	1.62
61017--61120	54	1.9	54	82	0	127	24	12	27	35	1.91
60973--61158	97	1.9	97	83	2	239	26	13	25	34	1.93
61071--61255	43	4.3	43	79	6	142	25	14	27	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61067--61256	86	2.2	85	79	3	211	25	13	27	33	1.93
62328--62383	29	1.9	30	82	7	71	39	17	0	42	1.50
70433--70488	18	2.8	20	78	13	62	51	1	1	44	1.22
71544--71716	30	5.8	29	80	9	188	31	30	5	32	1.80
71527--71729	59	3.4	59	83	8	241	32	28	5	33	1.80
71527--71729	30	6.7	29	76	15	148	32	28	5	33	1.80
79866--79926	17	3.7	16	72	14	52	45	3	1	49	1.28
80030--80081	25	2.0	26	85	3	70	42	3	9	44	1.55
83090--83127	18	2.1	18	85	9	51	50	13	10	26	1.73
83292--83370	41	1.9	41	82	12	99	50	17	1	30	1.54
86705--86732	6	4.7	6	100	0	56	32	0	67	0	0.91
106488--106536	26	1.9	25	87	4	71	22	32	8	36	1.84
118434--118473	20	2.0	20	100	0	80	15	10	10	65	1.48

Tables:   1

The End!