genome.fa.s12272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012272.1 Kokia drynarioides strain JFW-HI SEQ_127273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91749

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11--38	2	14.0	2	100	0	56	50	0	0	50	1.00
5237--5296	30	2.0	31	90	9	97	40	0	8	51	1.32
5803--5851	10	4.9	10	75	9	55	38	4	2	55	1.31
5794--5856	20	3.1	19	80	15	65	38	4	3	53	1.38
15189--15230	19	2.3	19	87	4	59	38	2	2	57	1.25
15262--15297	6	6.5	6	87	12	51	72	11	0	16	1.12
20525--20710	90	2.1	90	86	2	257	26	25	13	34	1.93
21875--21934	29	2.1	29	96	0	111	31	5	16	46	1.69
21888--21949	29	2.1	28	82	11	72	33	11	12	41	1.79
23564--23600	3	12.3	3	88	0	56	37	0	62	0	0.96
23566--23604	6	6.5	6	96	0	51	41	0	58	0	0.98
23566--23604	12	3.2	12	92	0	60	41	0	58	0	0.98
23651--23721	13	5.0	13	76	17	70	60	2	28	8	1.40
23645--23721	29	2.6	29	85	2	109	59	3	27	9	1.45
23955--24018	27	2.2	28	83	16	85	65	0	6	28	1.16
23955--24021	29	2.3	29	80	15	84	65	0	5	28	1.16
23993--24057	18	3.7	18	74	24	59	63	0	6	30	1.19
23956--24060	34	3.3	30	77	18	90	64	0	5	29	1.16
24067--24121	9	6.4	9	74	17	55	67	3	1	27	1.17
24076--24131	25	2.2	25	87	0	76	67	1	5	25	1.21
24137--24174	18	2.0	20	90	10	62	57	0	0	42	0.98
24159--24229	18	3.7	19	78	12	74	67	4	4	23	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24141--24229	40	2.4	36	81	12	99	65	3	3	28	1.25
24160--24201	21	2.0	22	85	4	59	66	7	2	23	1.28
24141--24229	18	4.7	18	72	22	67	65	3	3	28	1.25
26440--26466	6	4.5	6	100	0	54	33	48	18	0	1.49
29772--29830	30	2.0	30	86	3	84	28	1	28	40	1.66
30141--30190	25	2.0	25	92	0	82	30	30	0	40	1.57
31085--31109	13	1.9	13	100	0	50	32	0	4	64	1.12
31333--31365	15	2.1	16	88	5	50	51	0	0	48	1.00
31607--31639	17	1.9	17	88	11	50	69	0	3	27	1.03
32054--32084	14	2.2	14	94	0	53	74	0	3	22	0.96
31537--32388	439	1.9	436	94	1	1517	39	15	16	28	1.89
33221--33259	18	2.2	18	85	0	51	10	5	5	79	1.04
34463--34544	31	2.6	33	86	9	118	23	10	10	54	1.66
36072--36112	20	2.0	20	85	9	55	58	7	0	34	1.26
36057--36162	51	2.0	53	94	3	189	57	9	3	29	1.48
36365--36428	27	2.4	27	89	0	101	23	29	25	21	1.99
36750--36783	17	2.0	17	94	0	59	44	0	2	52	1.16
37211--37282	33	2.2	32	78	11	76	51	0	2	45	1.15
42654--42704	26	2.0	26	88	3	77	17	27	3	50	1.63
43270--43331	27	2.3	27	86	5	81	14	27	33	24	1.94
46787--46832	23	2.0	23	83	8	58	32	0	8	58	1.28
47320--47345	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54682--54717	16	2.2	16	90	0	54	38	2	11	47	1.54
56345--56401	23	2.5	23	76	0	60	66	3	0	29	1.08
61840--61895	21	2.7	21	75	22	64	46	5	5	42	1.49
63422--63529	40	2.7	40	78	4	137	33	20	20	25	1.97
70243--70550	29	10.8	28	76	15	215	35	3	27	33	1.75
70269--70370	49	2.1	49	98	0	195	34	1	27	36	1.68
70299--70341	20	2.2	20	91	8	70	32	2	27	37	1.70
70328--70547	59	3.7	59	80	7	241	35	4	26	33	1.76
70313--70546	88	2.7	88	83	4	301	34	4	27	33	1.76
71122--71191	3	24.0	3	86	5	90	35	1	1	61	1.14
71886--71936	6	8.8	6	75	16	54	52	1	3	41	1.31
71888--71936	17	2.8	18	87	9	75	55	2	4	38	1.31

Tables:   1

The End!